Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01311 ATGTCGGTTTCGCAAACCCTAGGTGGCACGTCCAGATGCGGCCGTGCGATCGGCCCTTCTCTCGATAAGATTGTCAAAAACGCAGCCTGGCGTAAGCATTCTCACCTTGTTTCCTCTTGTAAATCCGTTCTCGATAAACTTGATTCTATTGCGGAGGCTGCTCTTGATCCTGCCTCCCCGGTCGCCGGCCTTTCACCGGCTGATGCGGAGTTTGTGCTCCAACCTCTTCTTTTGGCTCTTGATGCCGCATATGTCAAGGTTGCTGAGCCCGCGCTTGAGTGCGTTTTCAAATTGTTCTCCCGTGGTCTTTTCCGTGGCGAGATCGAGCGGCCGGATGGCGAGGGGAATCCCAGTGCCAGTTCCATTGTGTATAAGATTGTTGAGTCGGTTTGTAAGTCGGGAGGTCTAGGTGATGAAGGAATTGAGCTTACTGTTCTAAGAGTGTTGCTCTCTGCGGTTCGATGCCCTTGTGTATTGATCCGCGGGGATTGTCTGGTTAATGTTGTTCGGACTTGCTATAATGTGTATCTCGGTGGCTTAAGTGGTACGAATCAGATCTGTGCAAAATCCGTTCTAGGTCAAGTAATGGTCATTGTTTTCAGTAGGGTGGAGGAGGACTCCATGGATGTTCCGACGAGGATAATTTCTGTGAGTGAATTATTGGAATTTACCGATAAGAACTTGAATGAAGGAAATTCTATATATTTTTGCCAGAACTTTATTAATGAGGTAATGGATGCCAGCGAAGGGATTGCGGAGAAGAAACTATATGCGTTTTCGGCACAATTGCAGAATGGCCATGCTTCGCCGCTGAAAGCTGACAATAAAGGTGAATCTGATATAGGAGAAACGGAAGATGCTTCTAGTAAGATTAGGGAGGATGGATTCCATTTGTTTAAGAATTTGTGTAAATTGTCAATGAAATTCTCATCACCGGAGCACCCAGATGATCAGATCCTTTTAAGAGGAAAAATATTGTCTCTGGAACTGTTAAAGGTGGTTATGGATAATGCAGATTCTGTCACTGTTGGTTTCAGGTTTCTCAATGCTATCAAGCAATTTCTCTGCTTATCATTATTAAAAAACAGTGCCCTCTCGGCGATGGCCATCTTCCAGCTTCAATGTTCTATTTTTACGAGCTTGTTGACCAAATTTAGATCAGGATTGAAAGCAGAAATTGGCATCTTTTTTCCCATGCTTATCCTCCGAGTGCTTGAGAATGTGCTTCAGCCTAGTTTCTTGCAGAAGATGACCGTGCTCAATTTGTTAGATAAGATATCTCAAGATTCACAGATTATGGTTGACATTTTTGTCAACTATGATTGTGATGTTGATTCTCCAAATATTTTCGAGAGTGCCCTCTCGGCGATGGCCATCTTCCAGCTTCAATGTTCTATTTTTACGAGCTTGTTGACCAAATTTAGATCAGGATTGAAAGCAGAAATTGGCATCTTTTTTCCCATGCTTATCCTCCGAGTGCTTGAGAATGTGCTTCAGCCTAGTTTCTTGCAGAAGATGACCGTGCTCAATTTGTTAGATAAGATATCTCAAGATTCACAGATTATGGTTGACATTTTTGTCAACTATGATTGTGATGTTGATTCTCCAAATATTTTCGAGAGGATTGTGAATGGCCTTTTGAAAACTGCTCTTGGACCGCCTCCTGGTTCAACCACAACTTTGTCTCCAGCACAGGATATTACATTTAGGCTTGAATCTGTTAAGTGTTTGGTAAGCATCATTAAATCAATGGGAACTTGGATGGACCAACAAATGAAGCTAGATGATACAAATTTTCTCAAGACTTCTGAGAGTGACGCTTCAGCTGAGAATCATTTAAGTGGGGAAGAAACAGCTGCTGTTGACTCTGAGCTCCAGCCGGATGGAAATTCTGAGTTCTCAGATGCTGCTACACTTGAGCAACGAAGAGCTTACAAAATCGAACTCCAGAAAGGTATTTCGCTGTTCAATAGGAAACCTTCCAGGGGTATTGAGTTTCTGATCAACACAAAAAAAGTTGGTGGTTCTCCTGAAGAGGTGGCTTCTTTTCTCAAGAATACTAACGGCCTGAATGAAACAGTCATTGGGGATTATCTGGGTGAAAGGGAGGAATTCCCTTTGAAAGTTATGCATGCTTATGTTGATTCATTTAATTTTAAAGTGATGAACTTTGGCGAAGCCATAAGGTTTTTCCTGCGGGGCTTCAGGTTACCAGGAGAGGCACAAAAGATTGATCGCATCATGGAGAAGTTTGCCGAGCGGTACTGTAAATGTAACCCTGGTTCATTCACAAGTGCAGATACTGCTTATGTTCTTGCTTATTCTGTAATTATGCTGAACACAGATGCTCATAATAACATGGTGAAAGAAAAGATGACAAAAGCTGATTTTATTCGGAATAATCGAGGAATTGATGACGGCAAGGACTTACCCGATGAGTATCTTGGTGCTCTTTATGATCAGATTGTTAGGAATGAAATTAAGATGAATTCTGATTCTTCAGCTTCACAAAGTAAGCAGGCGACTAGCATCAACAAACTTTTGGGCTTGGATGGGATACTCAATTTAGTTTCTTGGAAGCAAACAGAAGAAAAAGCTGTTGGTGCAAACGGGCTTCTTATAAGGCACATACAGGAGCAATTTAAGGCGAAGTCTGGGAAATCTGAATCTGTTTATCACGCTGTGACAGATGTAACAATATTGAGGTTTATGGTGGAAGTGTGCTGGGGTCCTATGTTGGCGGCATTCAGTGTGACTCTTGACCAAAGCGATGATAAGCTTGCTACTTCTCAATGCTTACTAGGCTTTCGGCATGCTGTGCATGTCACAGCTGTCATGGGCTTGCAGACTCAACGGGATGCTTTTGTGACATCCATGGCTAAGTTTACCTATCTTCATTGTGCTGCAGATATGAAACAAAAAAACGTTGAAGCTGTGAAGGCTATAATATCAATTGCCATAGAGGATGGTAATTTTCTTCAAGAGGCATGGGAGCACATATTTACATGTCTCTCTAGAATTGAGAATTTACAATTATTGGGAGAGGGTGCACCATCTGATGCATCGTTTTTGACCACATCAAATATTGAAACTGAAGAGAAAGCACTGAAGTCGGTGGGTTTATCATCTCTGAAGAGAAAAGGAAGTCTCCAAAATCCAGCTGTTATGGCTGTTGTTCGTGGAGGTTCATACGACAGCACCTCTCTTGGAGTGAATTCTTCTCCAGGACCAGTAACTCCTGAACAGATTAAGCACCTAATTTCAAACTTGCATTTGCTCGATCAAATAGGGAATTTTGAGTTGAACCACGTATTTGCTCATAGTCAAAGCTTGAACAGTGAAGCAATAGTAGCATTCGTGAAGGCCCTTTGCAAGGTTGCTATTGCAGAGTTGCAGTCTCCTACAGACCCACGTGTGTTCAGCCTCACTAAATTAGTTGAAGTGGCGCACTACAACATGAACCGTATCAGATTGGTGTGGTCTCGCATGTGGAATGTTCTCTCTGATTTCTTTGTGTCAGTTGGCTTATCAGAAAACCTGTCAGTTGCAATATTTGTGATGGACTCACTGAGGCAGCTCGCAATGAAATTTTTGGAGCGTGAGGAGCTTGCGAATTATAACTTTCAGAATGAATTTCTGAGACCCTTCGTAATAGTTATGCAGAAAAGCAGCTCCACAGAAATCAGGGAATTAATAGTTCGGTGCATCTCGCAGATGGTTCTCAGTCGGGTCAATAATGTGAAATCTGGATGGAAAAGTGTTTTTATGGTTTTCACTGCTGCTGCTGCTGATGAGCGGAAGAATATTGTCTTATTGGCTTTTGAAACCATGGAAAAAATAGTCCGAGAATATTTTCCTTACATAACTGAGACTGAAACTACAACATTTACCGATTGCGTTCGATGTCTGATTACTTTTACAAATAGCAGATTTAATAGTGATGTCAGTCTCAATGCCATTGCGTTCCTTCGGTTTTGTGCTGTAAAACTTGCAGAAGGGGGACTCGTTTGCTATGAGATGGCGGGACACAATGTTTCATCCAATTCTCCAGATACACCCACACCCACACCCATGCCCACAGATAAGGATGATTATGCTTCCTACTGGGTTCCTTTGCTTGCAGGGCTATCAAAGTTAACATCTGATCCTAGATCACCAATCAGAAAAAGTTCCTTGGAAGTACTTTTTAATATCCTGAAGGATCATGGCCATCTTTTCTCGCGTCAATTTTGGGTTGGTGTTATAAATTCCGTAGTTTTCCCCATATTCAGTTCTTTACATGACAAGAAAGAAGTGGACATTAATGAAAATGATGCTTACTCAGAAGGAAGTACATGGGATTTTGATACCTGTGCAGTGGCAGCAGATTGTTTAGTAGATCTATTTGTTAGTTTTTTTAATGTAATAAGGTCTCAACTACCTGGCGTGGTGACGATTCTGACGGGATTCATTAGGAGTCCAATCCACGGTCCTGCCAGCACTGGCGTTGCTGCATTAATGCGTTTGGCAGGCGACTTGTCTAACAGGCTTACCGAAAACGAGTGGAGAGAGATTTTTCTTGCTTTGAAGGAAGCGGCCACGATAACCGTGCCTGGATTTCTCAAGGTCCTGAGGAGCATGGATGACATCAATGTTCCCGGGATGTCTCAATCTTATTATGACTTGGATGTGGCTTCAGATCAAGGTTTGTCAACCGATGGTCTCGATGACGATGAGCTGCAAACGGCCTCCTATATAGTTACGAGAATGAAGAGTCATATCTCAATGCAACTCCTCATCATACAGGTCATTACTGATCTGTACAAAAACCATACCCAACCTTTCTCAGAAGGCAACATTTCCATCATTCTTGAGATCTTTTCTTCCATTTCCACACATGCCCAGAAATTGAATTCTGACACAATCCTTCAGAAGAAGCTACAGAAAGCTTGCTCCATTCTGGAGATATCCGACCCACCTGTGGTTCACTTCGAAAACGAGTCTTATCAGAGCTACCTCAACTTTCTCCAGAATATGCTTGCAAATAATCCGTTGCTTACTAATTCAACTCTTATTGAATCCGAACTTGTCACAGTATGTGAACAAATTTTGCATATTTACTTGAAGTGCACCGGGATGCCGGGTGAGCAGAAAGAAACCAACCAGCCTGTACTACATTGGATTCTTCCTTTGGGTTCAGCAAGGAAGGAGGAACTGGCTGCTCGAACGTCTCTAGTTGTCTCGGCATTGCGGGTTCTATGCGGGTTCGAAAGGGACCTATTTAAAAGGTATGTTCCACAGCTTTTTCCATTGTTGGTAGAGCTTGTAAGGAGTGAACATAGCTCTGGAGAAGTTCAGGTTGTTTTGAGCATCATATTTCAATCATGTATAGGCCCAATAATTATGCAATAA 5391 42.35 MSVSQTLGGTSRCGRAIGPSLDKIVKNAAWRKHSHLVSSCKSVLDKLDSIAEAALDPASPVAGLSPADAEFVLQPLLLALDAAYVKVAEPALECVFKLFSRGLFRGEIERPDGEGNPSASSIVYKIVESVCKSGGLGDEGIELTVLRVLLSAVRCPCVLIRGDCLVNVVRTCYNVYLGGLSGTNQICAKSVLGQVMVIVFSRVEEDSMDVPTRIISVSELLEFTDKNLNEGNSIYFCQNFINEVMDASEGIAEKKLYAFSAQLQNGHASPLKADNKGESDIGETEDASSKIREDGFHLFKNLCKLSMKFSSPEHPDDQILLRGKILSLELLKVVMDNADSVTVGFRFLNAIKQFLCLSLLKNSALSAMAIFQLQCSIFTSLLTKFRSGLKAEIGIFFPMLILRVLENVLQPSFLQKMTVLNLLDKISQDSQIMVDIFVNYDCDVDSPNIFESALSAMAIFQLQCSIFTSLLTKFRSGLKAEIGIFFPMLILRVLENVLQPSFLQKMTVLNLLDKISQDSQIMVDIFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTTLSPAQDITFRLESVKCLVSIIKSMGTWMDQQMKLDDTNFLKTSESDASAENHLSGEETAAVDSELQPDGNSEFSDAATLEQRRAYKIELQKGISLFNRKPSRGIEFLINTKKVGGSPEEVASFLKNTNGLNETVIGDYLGEREEFPLKVMHAYVDSFNFKVMNFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPGSFTSADTAYVLAYSVIMLNTDAHNNMVKEKMTKADFIRNNRGIDDGKDLPDEYLGALYDQIVRNEIKMNSDSSASQSKQATSINKLLGLDGILNLVSWKQTEEKAVGANGLLIRHIQEQFKAKSGKSESVYHAVTDVTILRFMVEVCWGPMLAAFSVTLDQSDDKLATSQCLLGFRHAVHVTAVMGLQTQRDAFVTSMAKFTYLHCAADMKQKNVEAVKAIISIAIEDGNFLQEAWEHIFTCLSRIENLQLLGEGAPSDASFLTTSNIETEEKALKSVGLSSLKRKGSLQNPAVMAVVRGGSYDSTSLGVNSSPGPVTPEQIKHLISNLHLLDQIGNFELNHVFAHSQSLNSEAIVAFVKALCKVAIAELQSPTDPRVFSLTKLVEVAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSSSTEIRELIVRCISQMVLSRVNNVKSGWKSVFMVFTAAAADERKNIVLLAFETMEKIVREYFPYITETETTTFTDCVRCLITFTNSRFNSDVSLNAIAFLRFCAVKLAEGGLVCYEMAGHNVSSNSPDTPTPTPMPTDKDDYASYWVPLLAGLSKLTSDPRSPIRKSSLEVLFNILKDHGHLFSRQFWVGVINSVVFPIFSSLHDKKEVDINENDAYSEGSTWDFDTCAVAADCLVDLFVSFFNVIRSQLPGVVTILTGFIRSPIHGPASTGVAALMRLAGDLSNRLTENEWREIFLALKEAATITVPGFLKVLRSMDDINVPGMSQSYYDLDVASDQGLSTDGLDDDELQTASYIVTRMKSHISMQLLIIQVITDLYKNHTQPFSEGNISIILEIFSSISTHAQKLNSDTILQKKLQKACSILEISDPPVVHFENESYQSYLNFLQNMLANNPLLTNSTLIESELVTVCEQILHIYLKCTGMPGEQKETNQPVLHWILPLGSARKEELAARTSLVVSALRVLCGFERDLFKRYVPQLFPLLVELVRSEHSSGEVQVVLSIIFQSCIGPIIMQ 1796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21702086 21713027 + Lsi11G013110.1 Lsi11g01311 674478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01311 1796 Gene3D - 630 719 - -
Lsi11g01311 1796 Pfam Domain of unknown function (DUF1981) 1196 1278 IPR015403 -
Lsi11g01311 1796 Gene3D - 1186 1410 IPR011989 -
Lsi11g01311 1796 Pfam BIG2 C-terminal domain 1589 1787 IPR046455 -
Lsi11g01311 1796 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 9 451 - -
Lsi11g01311 1796 Pfam C-terminal region of Mon2 protein 1363 1428 IPR032817 -
Lsi11g01311 1796 SUPERFAMILY ARM repeat 1166 1789 IPR016024 -
Lsi11g01311 1796 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 451 1789 - -
Lsi11g01311 1796 MobiDBLite consensus disorder prediction 605 632 - -
Lsi11g01311 1796 CDD Sec7 645 827 IPR000904 GO:0005085|GO:0032012
Lsi11g01311 1796 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 455 538 IPR032691 -
Lsi11g01311 1796 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 293 449 IPR032691 -
Lsi11g01311 1796 PANTHER BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 4 9 451 - -
Lsi11g01311 1796 Gene3D - 720 840 IPR023394 -
Lsi11g01311 1796 PANTHER BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 4 451 1789 - -
Lsi11g01311 1796 SMART sec7_5 642 827 IPR000904 GO:0005085|GO:0032012
Lsi11g01311 1796 MobiDBLite consensus disorder prediction 273 288 - -
Lsi11g01311 1796 SUPERFAMILY Sec7 domain 642 833 IPR035999 GO:0005085|GO:0032012
Lsi11g01311 1796 Pfam Dimerisation and cyclophilin-binding domain of Mon2 16 206 IPR032629 -
Lsi11g01311 1796 ProSiteProfiles SEC7 domain profile. 638 825 IPR000904 GO:0005085|GO:0032012
Lsi11g01311 1796 Pfam Sec7 domain 646 827 IPR000904 GO:0005085|GO:0032012
Lsi11g01311 1796 MobiDBLite consensus disorder prediction 269 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01311 K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein - csv:101212521 2463.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01926 Lsi-Chr5:26445720 Lsi11g01311 Lsi-Chr11:21702086 1.08E-47 dispersed
Lsi05g01966 Lsi-Chr5:26793432 Lsi11g01311 Lsi-Chr11:21702086 5.92E-64 dispersed
Lsi05g01967 Lsi-Chr5:26796592 Lsi11g01311 Lsi-Chr11:21702086 4.19E-31 dispersed
Lsi11g00268 Lsi-Chr11:2703081 Lsi11g01311 Lsi-Chr11:21702086 8.11E-54 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010065 0 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01311 Lsi_Chr11 FPKM 3.987364 3.790228 4.475131 4.953825 3.625303 3.720752 4.374954 11.305053 12.071687 14.105231