Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01313 ATGTCCGATTTGAACTCCGCAGTCCACGGCGGCGCCTCTCGCTACGCCAATCAATTTCTCGGTTCAGAGCTCCAACTTCAAAATTTCTCACAAACCCATCTCACCGATCCCAACAACTCGCCGGAAAGTCACCAGAAAAATCTCAATCCGGCCGATTCAACCACCCCGACTAGCGGCGGTTCGTCCACGCGCCGCTGTCGCGGCCGCCCCGCCGGCTCCAAGAACAAGCCAAAACCGCCGGTGATTGTGACACGTGACAGCCCCAATGCTCTGAGATCGCACGTGCTGGAGGTCTCCGCCGGCTCCGATGTGATTGAATCCGTCTCGAGTTACGCCACGCGCCGCCGCCACGGCGTTTGCATTCTCGCCGGCACCGGCGCGGTCACAAACGTTAACTTGCGCCAGCCGGCGGCGCCGTCAGGGACTGTTATGACGCTTCATGGAACGTTTGAGATTGTGTCTCTGACTGGTACGGCGTTGCCACCGCCGGCGCCACCGGGGGCCGGCGGGATAACGATTTATTTGTCCGGCGGGCAAGGGCAGGTCGTCGGAGGAAATGTCGTCGGGCCGTTGACGGCGTCGAGTCCTGTTGTATTGATGGTGGCGTCGTTTACTAATGCGGTGTATGATCGGCTGCCGCTGGACGAGGCGGAGCCGCCGGTGCAAGCTCAGCCATCGGCATCACCATCTTCAGATATTACAGGTGGAGGTGGGCATCTCGGGGGCATCGGAAGCTTCAACCTTCCCGACGACGGTTACGGTTGGAATGGCAATACATCAAGGCCTCCGACGACACTGTGA 801 60.05 MSDLNSAVHGGASRYANQFLGSELQLQNFSQTHLTDPNNSPESHQKNLNPADSTTPTSGGSSTRRCRGRPAGSKNKPKPPVIVTRDSPNALRSHVLEVSAGSDVIESVSSYATRRRHGVCILAGTGAVTNVNLRQPAAPSGTVMTLHGTFEIVSLTGTALPPPAPPGAGGITIYLSGGQGQVVGGNVVGPLTASSPVVLMVASFTNAVYDRLPLDEAEPPVQAQPSASPSSDITGGGGHLGGIGSFNLPDDGYGWNGNTSRPPTTL 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21770634 21773077 + Lsi11G013130.1 Lsi11g01313 674480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01313 266 MobiDBLite consensus disorder prediction 32 64 - -
Lsi11g01313 266 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 25 10 245 - -
Lsi11g01313 266 MobiDBLite consensus disorder prediction 252 266 - -
Lsi11g01313 266 MobiDBLite consensus disorder prediction 217 266 - -
Lsi11g01313 266 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 206 IPR005175 -
Lsi11g01313 266 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 10 245 IPR014476 GO:0003680
Lsi11g01313 266 MobiDBLite consensus disorder prediction 32 88 - -
Lsi11g01313 266 Gene3D - 91 220 - -
Lsi11g01313 266 ProSiteProfiles PPC domain profile profile. 88 226 IPR005175 -
Lsi11g01313 266 CDD DUF296 92 158 IPR005175 -
Lsi11g01313 266 SUPERFAMILY AF0104/ALDC/Ptd012-like 88 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01313 Lsi-Chr11:21770634 Lsi09g01252 Lsi-Chr9:20189174 4.31E-64 dispersed
Lsi11g01313 Lsi-Chr11:21770634 Lsi05g01920 Lsi-Chr5:26394918 1.30E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01313 - - csv:101213839 376.326