Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01315 ATGGATAATGAGGTGATTGAATTTGATATTGGATTGGGAGGAGGGAGTGGGAGGGAGGGAGATGACTATTCTATGGGTATTGTGCATCATTCTATTGAGGATGAGGAAATGGTTGATAGCCCTCCTTTCAGCAGTCTTGGTGGCGGCGCTGGCAGTGGTGAGATATATCTTCCTGAAGGTGATCTTTTGGATCTTGAACCTTATGAAGGAATGGAATTTGAGTCTGAAGAAGCTGCCAAGGCTTTCTATAATTCGTATGCTCGACGTGTTGGGTTTAGTACTCGTGTCAGCTCCTCCCGACGGTCTAGGCGTGATGGAGCGATTATACAAAGGCAATTTGTTTGTGCCAAAGAGGGTTTTAGGAATATGAATGAGAAGCGAACTAAAGACAGAGAAATTAAGCGTCCTCGAACTATCACAAGAGTGGGTTGCAAAGCATCCTTGTCTGTAAAGATGCATGATTCTGGGAAATGGGTTGTATCTGGATTTGTAAGAGAGCATAATCATGAGTTAGTTCCTCCTGACCAGGTGCACTGCTTGCGGTCTCATAGGCAAATATCAGGTCCAGCAAAGACCTTAATTGATACTTTACAGGCTGCTGGGATGGGTCCTCGTAGGATTATGTCGGCACTGATAAAGGAGTATGGAGGAATCAGTAAAGTTGGATTTACAGAGGTGGATTGTCGAAATTATATGAGGAATAATCGCCAAAGGAGCTTAGAAGGAGACATTCAACTGCTTTTGGATTACTTGAGGCAAATGCATTCTGAAAATCCTAACTTCTTCTATGCTGTTCAGGGTGAGGAGGATCAGTGTGTGGGAAATGTCTTTTGGGCCGATCCAAAAGCTCGGATGAACTATACTTACTTTGGTGATACTGTTACATTTGACACTACCTATAGGTCAAACAGATATCGTCTGCCCTTTGCTCCGTTCACTGGGGTGAATCACCATGGACAGCCTGTGTTGTTTGGTTGTGCTTTTCTAATAAATGAATCCGAAGCGTCATTTAATTGGCTATTTAGAACGTGGCTTTTGGCAATGTCTGGTCGCCCACCTGTGTCAATTACTACTGATCACGATGCAGTAATACAGTCAGCCATTACACAAGTTTTCCCTGAGACCCGTCACCGTTTCTGCAAATGGCATATCTTCAAGAAATGCCAGGAGATGCTGTCTCATGTGTTTCTTAAACACCCAAGTTTTGAAGCTGACTTCCACAAATGTGTAAACTTGACTGACTCTATCGAGGAATTTGAGTCCTGCTGGCTGTCACTTGTTGACAGATATGATCTCAGGGATCATGAGTGGCTTCAGACAATTTACTCTGCTCGGAGGCAGTGGGTTCCGGTGTATTTACGGGACACTTTTTTTGCTGAAATGTCTATTACACAACGAAGTGATAGCATGAATTCATATTTTGATGGGTATGTGAATGCTTCGACCAATTTGAGTCAGTTCTTTAAACTGTATGAAAAAGCTTTAGAGAGTCGGAATGAGAAAGAAGTGAAAGCAGATTATGATACAATGAACACTTCCCCTGTTCTAAAGACTCCATCTCCAATGGAAAAACAGGTTTCTGAGCTTTACACCAGGAAGCTGTTCTCAAGGTTCCAAGAGGAGTTAGTTGGCACGTTAACTTTTATGGCATCGAAAGCTGATGATGATGGGGAAATTATAACATATCAAGTGGCCAAATTTGGAGAGGATCATAAAGCTCACCATGTGAAATTTAATGTTTTGGAGATGAGAGCAAGTTGTAGTTGCCAGATGTTCGAGTTCTCAGGTCTTTTGTGCAGACATATCTTGGCTGTCTTCAGAGTGACCAATGTTCTTACACTTCCATCTTATTACATATTGAAAAGATGGACAAGAAATGCGAAAAGTAATGTGATTTTGGAGGACCATGTGAATGATATCTATAACAACTATCTTGAATCTCACACTGTGAGATACAATACCCTGCGCCACGAGGCTTTTAAATTTATAGAGGAAGGAGCAAAGACTGTGGATATGTATAATGTGGCTAAAGATGCCCTTCAGGAGGCTACTAAAAGGGTTGCTCATACAACGAGGAATGATGGCAAAATTTCTACAATCAATGGGCGAATTAAAGTGGACCCTGTAAATGTCAGAAGCTATACAAATCACAGTAGTAGCAGGGATCATGGCGAGAGCTTGAGTAAAAACATGTCTGAGGGGGAGAAAATAACTGGTTTGAAGATTGTGGCAATGTTCATTTCATTGATGGCTAACCTTTTCAGATCAGGATCCATGTTCAGATCAGCATCTTATTCTACATCAATTTCTGAGATGTCCATTAATCATCAGACAAGATCTGATGTTTCAATAAATCTTGGAATTGGTACATCCTCGTAA 2379 41.57 MDNEVIEFDIGLGGGSGREGDDYSMGIVHHSIEDEEMVDSPPFSSLGGGAGSGEIYLPEGDLLDLEPYEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMHDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLLLDYLRQMHSENPNFFYAVQGEEDQCVGNVFWADPKARMNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFNWLFRTWLLAMSGRPPVSITTDHDAVIQSAITQVFPETRHRFCKWHIFKKCQEMLSHVFLKHPSFEADFHKCVNLTDSIEEFESCWLSLVDRYDLRDHEWLQTIYSARRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLSQFFKLYEKALESRNEKEVKADYDTMNTSPVLKTPSPMEKQVSELYTRKLFSRFQEELVGTLTFMASKADDDGEIITYQVAKFGEDHKAHHVKFNVLEMRASCSCQMFEFSGLLCRHILAVFRVTNVLTLPSYYILKRWTRNAKSNVILEDHVNDIYNNYLESHTVRYNTLRHEAFKFIEEGAKTVDMYNVAKDALQEATKRVAHTTRNDGKISTINGRIKVDPVNVRSYTNHSSSRDHGESLSKNMSEGEKITGLKIVAMFISLMANLFRSGSMFRSASYSTSISEMSINHQTRSDVSINLGIGTSS 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21784771 21790063 + Lsi11G013150.1 Lsi11g01315 674482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01315 792 Pfam MULE transposase domain 294 387 IPR018289 -
Lsi11g01315 792 SMART 26again6 585 612 IPR006564 GO:0008270
Lsi11g01315 792 ProSiteProfiles Zinc finger SWIM-type profile. 578 610 IPR007527 GO:0008270
Lsi11g01315 792 Pfam SWIM zinc finger 562 608 IPR007527 GO:0008270
Lsi11g01315 792 Pfam FAR1 DNA-binding domain 82 173 IPR004330 -
Lsi11g01315 792 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 40 740 - -
Lsi11g01315 792 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 740 IPR031052 GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01315 - - - csv:101218471 1441.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00791 Lsi-Chr7:8710420 Lsi11g01315 Lsi-Chr11:21784771 1.08E-163 dispersed
Lsi07g00792 Lsi-Chr7:8720429 Lsi11g01315 Lsi-Chr11:21784771 3.04E-154 dispersed
Lsi01g00493 Lsi-Chr1:4059486 Lsi11g01315 Lsi-Chr11:21784771 3.43E-74 transposed
Lsi04g00797 Lsi-Chr4:7524110 Lsi11g01315 Lsi-Chr11:21784771 3.55E-117 transposed
Lsi05g01468 Lsi-Chr5:22529551 Lsi11g01315 Lsi-Chr11:21784771 4.38E-17 transposed
Lsi06g00435 Lsi-Chr6:4758557 Lsi11g01315 Lsi-Chr11:21784771 0 transposed
Lsi11g00063 Lsi-Chr11:716734 Lsi11g01315 Lsi-Chr11:21784771 8.06E-83 transposed
Lsi11g01347 Lsi-Chr11:22095554 Lsi11g01315 Lsi-Chr11:21784771 3.89E-66 transposed
Lsi10g00014 Lsi-Chr10:263700 Lsi11g01315 Lsi-Chr11:21784771 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g320 . . . . . . . . . . . Cma20g00708 . Car20g00607 . . . . . . . . . . Cla02g00322 Cam02g0331 Cec02g0331 Cco02g0335 Clacu02g0321 Cmu02g0320 Cre02g0653 . . Cone3ag1258 . . . . . . . . . . . . . . . Cmo20g00702 . . Car11g01433 . Cpe16g00358 . . . . . . . . Cla02g01052 Cam02g1123 Cec02g1127 Cco02g1163 Clacu02g1110 Cmu02g1074 Cre02g1378 Lsi11g01315 . . Cme11g01021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26200 PF10551 MULE 3.70E-29 CL0219 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01315 Lsi_Chr11 FPKM 5.327434 7.191858 8.994832 10.259634 6.491156 7.604319 6.409715 8.373962 7.524008 9.27307