Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01317 ATGAATTTGATGAGGAAAATGTTTATGTGTAAGACAGATTTGAGTACCTTGGTTGTGGTTGTGGCTTCTTTGGTGTTGCTCTTTGAAGCTGTGAGCAGCCAACCGATCCGTGAGCATCGTTTTACTTATGTTGAATTCAATGAAAGGCAGCACAACCAAGATTTCCTCTTCACCCGAAGTTCTTCCATCGACGGTGGGGCACTGCAGTTAACTCCTGACTCGCAGAACGATGTTGTTAGCCTTCAAAATACATCTGGCCGCATTATGTACCACGAGCCGTTCAAGTTATGGCTAGCTGATATTGATAAAAAGGAGGAAGATGACATTGTTGCTTCATTCAGCTCATACTTTTACATCAATATTTTCAGAAGGGAAGAATGGAATTCTGGTGAGGGACTTACTTTTCTTATAGCTCCGACTGCTGATGTACCTGAACAGAGCTGGGGGCGGTGGATGGGCCTCACCAATGCAACCACCGACGGCGACAGCAGAAACCAAATTGTAGCCATCGAATTCGATACCGAGAAGCAGGATTTTGACCCCGACAACAACCATATCGGTCTGAACATCAACTCCATCAAATCGAGGAAGACTGTTTCCCTGGATGAAGCTGGCATAGTTTTATCCCCAAAGACCGGAACTAATCACAGTATCTGGGTTGATTACGATGGCAAAGCCAAACTTTTGCAGGTTTACATGTCCATAAACAGAGATCCAAAACCTGATAAACCTCTTCTCAATGAAACGATAAACCTGAAAAAATTTGTGAAACAAGAATCATACATTGGATTTTCTGCTTCTACAGGAAGCCCACAAATTCAATTGAACTGTGTCTTGGAATGGACACTAGATTTGGAACGTCTGCCAGAGAAGAAAGATCTAACGTGGTTGAAGATCCTTGCAGGGGTTGGAATTCCGATACTAACAATCGCAATTCTGGTTGGGGTTTGGTTGTTTGTTGGTTATAGGAAGAAGAGGAGAGAGAACAGGGATGAGGAGTCAAATGTTCAGGGCACACTGAAGAGGTTGCCTGGAATGCCCAGAGAGTTCAAGTACAAGGAACTAAAAAGAGCGACTCATAACTTCCATGAAAGCATGGTTCTGGGAAATGGAGGATTTGGGGTTGTGTACAAAGGGGTTCTTCAGGACAAGGATAGGGACGTTACTGCATCTTCAAATTCTGTTTCCAGGCTTGAGATTGCCGTCAAGCAATTCTCCAGGGACAGCATTAAGAGCAAAAGTGATTTTCTGGATGAGCTCACCATTATTCATCGTCTTCGCCACCGGAACCTTGTCCGTTTAGAAGGGTGGTGCTACGAGAAAGGGAAGCTTTTATTAGTATATGACTTCATGCCTAATGGAAGCCTTGAGAATCACCTATATGACGTTGATGACGAAAATGTTCTCAACTGGGGACATCGCTATAAAATTCTTGTAGGAGTTGCATCTGCGTTGCATTACCTGCATAATGAGTACGACCAGAAAGTATTGCACCGAGATATCAAATCAAGCAATATCTTGCTTGATTCTGACTTCAATGCTCGTCTAGGAGATTTCGGCCTTGCTAGAGCCTTGGATCCTGAAAGAAACTCTTATGCAGACCTGCAGTGTGGTGGAGTTGCAGGCACAATGGGTTATGTTGCTCCCGAATGCTTCCATGAAGGAAGGGCTACTCCTGAATCTGATGTATATGGTTTTGGGGCAGTGGTGCTTGAGATCGTTTGTGGCAGAAGACCTGGAGCTATTATTGAAGACGAGAAAAATCAGTATAGCCTAATTGATTGGGTGTGGAAGGTACACCGTGAAGGACACATTGAAAAAGCTGTCGATAACCAGCTGGGTAATGATATTGTGGTTGATGAAGCTAGAAGGCTTCTACTGCTTGGGTTGGCATGTTCACATCCCATGGCAAGTGAAAGGCCACAAACTCAGGCTATAATCCAAATTTTAAATGGAGCTTTGCCTGCGCCTCAAGTACCTCCATTCAAGCCAGTCTTCATGTGGCCTCCCATGAGCAGTTCTTCCACCAGTTCTATTCTCACTTCACTGTCAAACACGAATAACTCTCTTCCGTGA 2076 44.17 MNLMRKMFMCKTDLSTLVVVVASLVLLFEAVSSQPIREHRFTYVEFNERQHNQDFLFTRSSSIDGGALQLTPDSQNDVVSLQNTSGRIMYHEPFKLWLADIDKKEEDDIVASFSSYFYINIFRREEWNSGEGLTFLIAPTADVPEQSWGRWMGLTNATTDGDSRNQIVAIEFDTEKQDFDPDNNHIGLNINSIKSRKTVSLDEAGIVLSPKTGTNHSIWVDYDGKAKLLQVYMSINRDPKPDKPLLNETINLKKFVKQESYIGFSASTGSPQIQLNCVLEWTLDLERLPEKKDLTWLKILAGVGIPILTIAILVGVWLFVGYRKKRRENRDEESNVQGTLKRLPGMPREFKYKELKRATHNFHESMVLGNGGFGVVYKGVLQDKDRDVTASSNSVSRLEIAVKQFSRDSIKSKSDFLDELTIIHRLRHRNLVRLEGWCYEKGKLLLVYDFMPNGSLENHLYDVDDENVLNWGHRYKILVGVASALHYLHNEYDQKVLHRDIKSSNILLDSDFNARLGDFGLARALDPERNSYADLQCGGVAGTMGYVAPECFHEGRATPESDVYGFGAVVLEIVCGRRPGAIIEDEKNQYSLIDWVWKVHREGHIEKAVDNQLGNDIVVDEARRLLLLGLACSHPMASERPQTQAIIQILNGALPAPQVPPFKPVFMWPPMSSSSTSSILTSLSNTNNSLP 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21799520 21803058 + Lsi11G013170.1 Lsi11g01317 674484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01317 691 Gene3D - 37 298 - -
Lsi11g01317 691 Gene3D Transferase(Phosphotransferase) domain 1 451 657 - -
Lsi11g01317 691 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 16 689 - -
Lsi11g01317 691 CDD lectin_legume_LecRK_Arcelin_ConA 41 283 IPR001220 GO:0030246
Lsi11g01317 691 Pfam Protein tyrosine and serine/threonine kinase 366 587 IPR001245 GO:0004672|GO:0006468
Lsi11g01317 691 PANTHER - 16 689 - -
Lsi11g01317 691 SUPERFAMILY Protein kinase-like (PK-like) 345 677 IPR011009 -
Lsi11g01317 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 496 508 IPR008271 GO:0004672|GO:0006468
Lsi11g01317 691 Gene3D Phosphorylase Kinase; domain 1 347 450 - -
Lsi11g01317 691 SMART serkin_6 362 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01317 691 Pfam Legume lectin domain 39 294 IPR001220 GO:0030246
Lsi11g01317 691 SUPERFAMILY Concanavalin A-like lectins/glucanases 40 298 IPR013320 -
Lsi11g01317 691 ProSiteProfiles Protein kinase domain profile. 362 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01317 - - - csv:101218232 1237.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01742 Lsi-Chr3:28787879 Lsi11g01317 Lsi-Chr11:21799520 8.67E-135 dispersed
Lsi03g01748 Lsi-Chr3:28882733 Lsi11g01317 Lsi-Chr11:21799520 9.82E-118 dispersed
Lsi11g01317 Lsi-Chr11:21799520 Lsi05g00796 Lsi-Chr5:11636923 2.13E-132 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g321 . . . . . . . . Cmo19g00842 Cmo11g01827 . . . . . Cpe04g00668 Cpe15g00663 Bhi05g01535 . . . . . . Cla02g00321 . . . . . . Cone12ag1284 Cone8ag1348 . . . Csa07g00223 . . . Blo13g00458 . . Bpe15g00769 . Bma03g00652 Bma08g00704 . . . Cma11g01293 Cma19g00825 Car11g01453 Car19g00640 . . . . . . . . . . . . . . . . Lsi11g01317 . Chy01g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006270 1 1 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84048 PF07714 PK_Tyr_Ser-Thr 5.50E-43 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01317 Lsi_Chr11 FPKM 17.797741 19.426104 15.15989 16.104311 11.479903 10.964718 11.872271 17.074806 15.109117 16.254868