Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01320 ATGTTAGACAACGATAGGCCATCTGAAGCTTCATGGAGTCTCGAATTTGCCATTGCCATATCACAATTCTACGGCCCTGTTTCACTTTCATGCCGTCTTCTTTGGAGCAGATATTTCTCTTCAAAAAAGACGAACCGGACAAATTTCATACTTACATTTCGTACACATGCAAGAGAGAAAGATCAGAAAATGGATGAGAAGAGAGAAACCGAAGAGCCATCAAGCTGTAATCTCTCATCTTCTGCTTATCAAATCAGCTCTATAGAAAAGAAGACACCAATTGAAGTCTTTCAAGTGCCTGCAAGTTCTGGAGATAGCCATTCCAAGGGGGAGAGTGATGCCACTCATGAGCAGAATGAGGCAAAATCATCCTTCTGTTCCTTTCGTCCTGCTGCCAGCATGGAAGCATCCAGAAAGTGGATGGCATTTGAAAGTGAAAACTTTGATATAACAAAGACATACATAAAGAACTTCAGTGGTAGCTTTGGGTCATATTCTGCTGAACTCTTGGAAACAAACATGACAAAAAGAACTGTAGAGGAGAACAAGATTGATGGTTTATCATCGCTGCAACTGACGTATGTTATCTCAGATGCAACAAAACCAGATTACCCTATCATGTTTGCCAGCAATAGGTTCTTGGTTATGACTGGATATACATGGGAGGAGGTCATTGGAAGGAACTGCCGGTTTCTTCAAGGACCAGAGACGGATAAGAATGAAGTAGCCAAAATACGAGATGCAATTAGAAAGGGGAATAGCTACTGTGGCAAGCTCTTGAACTACAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGACCTGTCAAAGACTCCCATGGCAACATCATCAAATCCATTGGAATGCAGGTTGAGATTGCCAAAAACACAGAAGAAAAAGAGAAAACCATGAGGTCCATGTCCATTACAGAGGTCCAAGCTGAGAGGGCAATTAGGTCCATTGTGGAGGTCCAAGCTGTGAAAAGTCTAAGATCTTACATTCAGTCAAAAAGTCATGATGCCGATACAAAGCACAAAGAGCCAGAAACGACTGATGTTGATTGTGCTCTGTCCAAGGCTCTGGATAATGAGCATAGAACAGCTGATAACCAAAAGGCTCGGTTCAAAGAAAGGACTCAAGGTTCTGCAGTAGAATGTGAAGAAACGACAGTTGTTGAGACATCTGTTTTCAAGCCTAGGGATGGTGATCGTGTTGCTAAAAGAGAAAGTAACATACGTCAAGGAATTGAGTTGGCTACCACATTGGAACGGATAGAGAAGATATTTTTTATCACTAACCCAAGACTTCCAGATAATCCTATTATATTTGCATCTCATAGGTTTCTTGACTCCACAGAATACACGCGTGAAGAAGTTCTGGGGAGAAACTTTTGGTTTCTTCAGGGACCTGAAACAGATCAAGCAACAGTCTCAAAGATAAATAATGCAATTGAAGAGCAGAGAGAAATCACTCTTCAGATAATCAACTATACAAAGAGTGGAAAAAAGTTCTTGAATTTGTTCCACTTGCAACCCGTGTGTGATCAAAAGAAGGGCGAGCTTCAATATTTCATTGGTGTGCAACTTCATCAAAAACCTTCGAGAGACCGACTTTTAAATCAGACAGAGCATGAAAGTGCTAAGCTGGCTAAAGTTGTAGCTGAAAATGTTGACAAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAAAGAACATCTGGGCAATCTATTGTCAGCCAGTCTTGCCAAGGCCTCACAAGAAGTACAGTCCTTCCTGGATAGCCATACTGAAGGTTCACCGAGCATGCATGGAAAGGGAAATCATATCACTTTTGGATCATCCTTTCATGCCAACACTATACTCTTCATTTCAGACGCTGACGCACATTTTTCTGATTATGGACTTCTGCCCCGGTGGAGAGTTATTAACCTTTCTTGACAAGCAGCCAATGAAAATGTTTAAAGAGGAAGCTGCTGGGTTCTATGCTGCAGAAGTTGTCATTGCTTTGGAGTACCTTCACTGTTTAGGTATTATCTACAGGGACCTAAAACCCGAAAACATTCTACTCCAGACAGACGGACATATCATCCTCACTGATTTCGATTTGTCGTTTAAGACATCTAACATACAAACCATAGAATCTTCACCTCCGAGAAAGAAGACATGTAGGCATAAATCACTGCCGACGTTCGTCATCGAACCTATGGTAGAACTGAATTCATTCATTGGAACTGAAGAGTATATTGCCCCAGAGATCATTATGGGTGCAGGCCATAGTAGTTCTATTGACTGGTGGACTCTAGGCTTAGATCTTGTTTTGAGTTCGTTCAATGGCAACAACTGCTCATGCTTAATATTGCAGGCAAGCCTTGCAGCAAAACAGCTGATTGATGCACTACTACAGAGAGACCCTACACGTCGGCTAGGATCAAGTACCGGTGCCGATGAAATCAAACGACATCCATTTTTCCGTCATATAGATTGGCCTAAAATTCGAACCATGACACCACCATCACCAGAAGTAGCCCTTCAAATAACTGAGAGAGAACCAAAGGCTAATGATTTGAAGTGGGAAGATGGAGTGCTCAGTCATTCAATGGTTGCTGATATTTTCTGA 2628 41.89 MLDNDRPSEASWSLEFAIAISQFYGPVSLSCRLLWSRYFSSKKTNRTNFILTFRTHAREKDQKMDEKRETEEPSSCNLSSSAYQISSIEKKTPIEVFQVPASSGDSHSKGESDATHEQNEAKSSFCSFRPAASMEASRKWMAFESENFDITKTYIKNFSGSFGSYSAELLETNMTKRTVEENKIDGLSSLQLTYVISDATKPDYPIMFASNRFLVMTGYTWEEVIGRNCRFLQGPETDKNEVAKIRDAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGNIIKSIGMQVEIAKNTEEKEKTMRSMSITEVQAERAIRSIVEVQAVKSLRSYIQSKSHDADTKHKEPETTDVDCALSKALDNEHRTADNQKARFKERTQGSAVECEETTVVETSVFKPRDGDRVAKRESNIRQGIELATTLERIEKIFFITNPRLPDNPIIFASHRFLDSTEYTREEVLGRNFWFLQGPETDQATVSKINNAIEEQREITLQIINYTKSGKKFLNLFHLQPVCDQKKGELQYFIGVQLHQKPSRDRLLNQTEHESAKLAKVVAENVDKAVRELPDANLKPKNIWAIYCQPVLPRPHKKYSPSWIAILKVHRACMEREIISLLDHPFMPTLYSSFQTLTHIFLIMDFCPGGELLTFLDKQPMKMFKEEAAGFYAAEVVIALEYLHCLGIIYRDLKPENILLQTDGHIILTDFDLSFKTSNIQTIESSPPRKKTCRHKSLPTFVIEPMVELNSFIGTEEYIAPEIIMGAGHSSSIDWWTLGLDLVLSSFNGNNCSCLILQASLAAKQLIDALLQRDPTRRLGSSTGADEIKRHPFFRHIDWPKIRTMTPPSPEVALQITEREPKANDLKWEDGVLSHSMVADIF 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21818657 21831985 - Lsi11G013200.1 Lsi11g01320 674487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01320 875 SMART pac_2 493 536 IPR001610 -
Lsi11g01320 875 SMART pac_2 256 298 IPR001610 -
Lsi11g01320 875 ProSiteProfiles Protein kinase domain profile. 535 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01320 875 CDD PAS 430 532 IPR000014 -
Lsi11g01320 875 MobiDBLite consensus disorder prediction 60 80 - -
Lsi11g01320 875 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Lsi11g01320 875 SUPERFAMILY PYP-like sensor domain (PAS domain) 431 530 IPR035965 -
Lsi11g01320 875 Pfam PAS domain 438 529 IPR000014 -
Lsi11g01320 875 Pfam PAS domain 200 293 IPR000014 -
Lsi11g01320 875 ProSiteProfiles PAS repeat profile. 416 489 IPR000014 -
Lsi11g01320 875 PANTHER BNAA02G07840D PROTEIN 601 874 - -
Lsi11g01320 875 Gene3D Transferase(Phosphotransferase) domain 1 640 841 - -
Lsi11g01320 875 SMART pas_2 418 487 IPR000014 -
Lsi11g01320 875 SMART pas_2 181 250 IPR000014 -
Lsi11g01320 875 Pfam Protein kinase domain 603 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01320 875 ProSiteProfiles PAS repeat profile. 206 252 IPR000014 -
Lsi11g01320 875 PANTHER FLIPPASE KINASE 1-RELATED 601 874 - -
Lsi11g01320 875 PANTHER BNAA02G07840D PROTEIN 176 601 - -
Lsi11g01320 875 SUPERFAMILY PYP-like sensor domain (PAS domain) 200 293 IPR035965 -
Lsi11g01320 875 ProSiteProfiles PAC domain profile. 253 307 IPR000700 -
Lsi11g01320 875 Gene3D PAS domain 405 566 - -
Lsi11g01320 875 SMART serkin_6 542 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01320 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 681 693 IPR008271 GO:0004672|GO:0006468
Lsi11g01320 875 SUPERFAMILY Protein kinase-like (PK-like) 601 854 IPR011009 -
Lsi11g01320 875 TIGRFAM sensory_box: PAS domain S-box protein 206 303 IPR000014 -
Lsi11g01320 875 TIGRFAM sensory_box: PAS domain S-box protein 442 527 IPR000014 -
Lsi11g01320 875 PANTHER FLIPPASE KINASE 1-RELATED 176 601 - -
Lsi11g01320 875 Gene3D PAS domain 194 355 - -
Lsi11g01320 875 CDD PAS 206 295 IPR000014 -
Lsi11g01320 875 MobiDBLite consensus disorder prediction 100 123 - -
Lsi11g01320 875 Gene3D Phosphorylase Kinase; domain 1 602 639 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01320 Lsi-Chr11:21818657 Lsi05g02229 Lsi-Chr5:28852635 9.63E-63 dispersed
Lsi04g00459 Lsi-Chr4:4356328 Lsi11g01320 Lsi-Chr11:21818657 9.18E-21 transposed
Lsi10g01321 Lsi-Chr10:17417465 Lsi11g01320 Lsi-Chr11:21818657 8.11E-17 transposed
Lsi11g00764 Lsi-Chr11:8612074 Lsi11g01320 Lsi-Chr11:21818657 2.27E-06 transposed
Lsi10g00018 Lsi-Chr10:296026 Lsi11g01320 Lsi-Chr11:21818657 8.84E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84049 PF00069 Pkinase 2.10E-38 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01320 K20715 - csv:101213364 910.212