Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01320 | ATGTTAGACAACGATAGGCCATCTGAAGCTTCATGGAGTCTCGAATTTGCCATTGCCATATCACAATTCTACGGCCCTGTTTCACTTTCATGCCGTCTTCTTTGGAGCAGATATTTCTCTTCAAAAAAGACGAACCGGACAAATTTCATACTTACATTTCGTACACATGCAAGAGAGAAAGATCAGAAAATGGATGAGAAGAGAGAAACCGAAGAGCCATCAAGCTGTAATCTCTCATCTTCTGCTTATCAAATCAGCTCTATAGAAAAGAAGACACCAATTGAAGTCTTTCAAGTGCCTGCAAGTTCTGGAGATAGCCATTCCAAGGGGGAGAGTGATGCCACTCATGAGCAGAATGAGGCAAAATCATCCTTCTGTTCCTTTCGTCCTGCTGCCAGCATGGAAGCATCCAGAAAGTGGATGGCATTTGAAAGTGAAAACTTTGATATAACAAAGACATACATAAAGAACTTCAGTGGTAGCTTTGGGTCATATTCTGCTGAACTCTTGGAAACAAACATGACAAAAAGAACTGTAGAGGAGAACAAGATTGATGGTTTATCATCGCTGCAACTGACGTATGTTATCTCAGATGCAACAAAACCAGATTACCCTATCATGTTTGCCAGCAATAGGTTCTTGGTTATGACTGGATATACATGGGAGGAGGTCATTGGAAGGAACTGCCGGTTTCTTCAAGGACCAGAGACGGATAAGAATGAAGTAGCCAAAATACGAGATGCAATTAGAAAGGGGAATAGCTACTGTGGCAAGCTCTTGAACTACAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGACCTGTCAAAGACTCCCATGGCAACATCATCAAATCCATTGGAATGCAGGTTGAGATTGCCAAAAACACAGAAGAAAAAGAGAAAACCATGAGGTCCATGTCCATTACAGAGGTCCAAGCTGAGAGGGCAATTAGGTCCATTGTGGAGGTCCAAGCTGTGAAAAGTCTAAGATCTTACATTCAGTCAAAAAGTCATGATGCCGATACAAAGCACAAAGAGCCAGAAACGACTGATGTTGATTGTGCTCTGTCCAAGGCTCTGGATAATGAGCATAGAACAGCTGATAACCAAAAGGCTCGGTTCAAAGAAAGGACTCAAGGTTCTGCAGTAGAATGTGAAGAAACGACAGTTGTTGAGACATCTGTTTTCAAGCCTAGGGATGGTGATCGTGTTGCTAAAAGAGAAAGTAACATACGTCAAGGAATTGAGTTGGCTACCACATTGGAACGGATAGAGAAGATATTTTTTATCACTAACCCAAGACTTCCAGATAATCCTATTATATTTGCATCTCATAGGTTTCTTGACTCCACAGAATACACGCGTGAAGAAGTTCTGGGGAGAAACTTTTGGTTTCTTCAGGGACCTGAAACAGATCAAGCAACAGTCTCAAAGATAAATAATGCAATTGAAGAGCAGAGAGAAATCACTCTTCAGATAATCAACTATACAAAGAGTGGAAAAAAGTTCTTGAATTTGTTCCACTTGCAACCCGTGTGTGATCAAAAGAAGGGCGAGCTTCAATATTTCATTGGTGTGCAACTTCATCAAAAACCTTCGAGAGACCGACTTTTAAATCAGACAGAGCATGAAAGTGCTAAGCTGGCTAAAGTTGTAGCTGAAAATGTTGACAAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAAAGAACATCTGGGCAATCTATTGTCAGCCAGTCTTGCCAAGGCCTCACAAGAAGTACAGTCCTTCCTGGATAGCCATACTGAAGGTTCACCGAGCATGCATGGAAAGGGAAATCATATCACTTTTGGATCATCCTTTCATGCCAACACTATACTCTTCATTTCAGACGCTGACGCACATTTTTCTGATTATGGACTTCTGCCCCGGTGGAGAGTTATTAACCTTTCTTGACAAGCAGCCAATGAAAATGTTTAAAGAGGAAGCTGCTGGGTTCTATGCTGCAGAAGTTGTCATTGCTTTGGAGTACCTTCACTGTTTAGGTATTATCTACAGGGACCTAAAACCCGAAAACATTCTACTCCAGACAGACGGACATATCATCCTCACTGATTTCGATTTGTCGTTTAAGACATCTAACATACAAACCATAGAATCTTCACCTCCGAGAAAGAAGACATGTAGGCATAAATCACTGCCGACGTTCGTCATCGAACCTATGGTAGAACTGAATTCATTCATTGGAACTGAAGAGTATATTGCCCCAGAGATCATTATGGGTGCAGGCCATAGTAGTTCTATTGACTGGTGGACTCTAGGCTTAGATCTTGTTTTGAGTTCGTTCAATGGCAACAACTGCTCATGCTTAATATTGCAGGCAAGCCTTGCAGCAAAACAGCTGATTGATGCACTACTACAGAGAGACCCTACACGTCGGCTAGGATCAAGTACCGGTGCCGATGAAATCAAACGACATCCATTTTTCCGTCATATAGATTGGCCTAAAATTCGAACCATGACACCACCATCACCAGAAGTAGCCCTTCAAATAACTGAGAGAGAACCAAAGGCTAATGATTTGAAGTGGGAAGATGGAGTGCTCAGTCATTCAATGGTTGCTGATATTTTCTGA | 2628 | 41.89 | MLDNDRPSEASWSLEFAIAISQFYGPVSLSCRLLWSRYFSSKKTNRTNFILTFRTHAREKDQKMDEKRETEEPSSCNLSSSAYQISSIEKKTPIEVFQVPASSGDSHSKGESDATHEQNEAKSSFCSFRPAASMEASRKWMAFESENFDITKTYIKNFSGSFGSYSAELLETNMTKRTVEENKIDGLSSLQLTYVISDATKPDYPIMFASNRFLVMTGYTWEEVIGRNCRFLQGPETDKNEVAKIRDAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGNIIKSIGMQVEIAKNTEEKEKTMRSMSITEVQAERAIRSIVEVQAVKSLRSYIQSKSHDADTKHKEPETTDVDCALSKALDNEHRTADNQKARFKERTQGSAVECEETTVVETSVFKPRDGDRVAKRESNIRQGIELATTLERIEKIFFITNPRLPDNPIIFASHRFLDSTEYTREEVLGRNFWFLQGPETDQATVSKINNAIEEQREITLQIINYTKSGKKFLNLFHLQPVCDQKKGELQYFIGVQLHQKPSRDRLLNQTEHESAKLAKVVAENVDKAVRELPDANLKPKNIWAIYCQPVLPRPHKKYSPSWIAILKVHRACMEREIISLLDHPFMPTLYSSFQTLTHIFLIMDFCPGGELLTFLDKQPMKMFKEEAAGFYAAEVVIALEYLHCLGIIYRDLKPENILLQTDGHIILTDFDLSFKTSNIQTIESSPPRKKTCRHKSLPTFVIEPMVELNSFIGTEEYIAPEIIMGAGHSSSIDWWTLGLDLVLSSFNGNNCSCLILQASLAAKQLIDALLQRDPTRRLGSSTGADEIKRHPFFRHIDWPKIRTMTPPSPEVALQITEREPKANDLKWEDGVLSHSMVADIF | 875 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 21818657 | 21831985 | - | Lsi11G013200.1 | Lsi11g01320 | 674487 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01320 | 875 | SMART | pac_2 | 493 | 536 | IPR001610 | - | |
Lsi11g01320 | 875 | SMART | pac_2 | 256 | 298 | IPR001610 | - | |
Lsi11g01320 | 875 | ProSiteProfiles | Protein kinase domain profile. | 535 | 827 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01320 | 875 | CDD | PAS | 430 | 532 | IPR000014 | - | |
Lsi11g01320 | 875 | MobiDBLite | consensus disorder prediction | 60 | 80 | - | - | |
Lsi11g01320 | 875 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 31 | - | - | |
Lsi11g01320 | 875 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 431 | 530 | IPR035965 | - | |
Lsi11g01320 | 875 | Pfam | PAS domain | 438 | 529 | IPR000014 | - | |
Lsi11g01320 | 875 | Pfam | PAS domain | 200 | 293 | IPR000014 | - | |
Lsi11g01320 | 875 | ProSiteProfiles | PAS repeat profile. | 416 | 489 | IPR000014 | - | |
Lsi11g01320 | 875 | PANTHER | BNAA02G07840D PROTEIN | 601 | 874 | - | - | |
Lsi11g01320 | 875 | Gene3D | Transferase(Phosphotransferase) domain 1 | 640 | 841 | - | - | |
Lsi11g01320 | 875 | SMART | pas_2 | 418 | 487 | IPR000014 | - | |
Lsi11g01320 | 875 | SMART | pas_2 | 181 | 250 | IPR000014 | - | |
Lsi11g01320 | 875 | Pfam | Protein kinase domain | 603 | 827 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01320 | 875 | ProSiteProfiles | PAS repeat profile. | 206 | 252 | IPR000014 | - | |
Lsi11g01320 | 875 | PANTHER | FLIPPASE KINASE 1-RELATED | 601 | 874 | - | - | |
Lsi11g01320 | 875 | PANTHER | BNAA02G07840D PROTEIN | 176 | 601 | - | - | |
Lsi11g01320 | 875 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 200 | 293 | IPR035965 | - | |
Lsi11g01320 | 875 | ProSiteProfiles | PAC domain profile. | 253 | 307 | IPR000700 | - | |
Lsi11g01320 | 875 | Gene3D | PAS domain | 405 | 566 | - | - | |
Lsi11g01320 | 875 | SMART | serkin_6 | 542 | 827 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01320 | 875 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 681 | 693 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi11g01320 | 875 | SUPERFAMILY | Protein kinase-like (PK-like) | 601 | 854 | IPR011009 | - | |
Lsi11g01320 | 875 | TIGRFAM | sensory_box: PAS domain S-box protein | 206 | 303 | IPR000014 | - | |
Lsi11g01320 | 875 | TIGRFAM | sensory_box: PAS domain S-box protein | 442 | 527 | IPR000014 | - | |
Lsi11g01320 | 875 | PANTHER | FLIPPASE KINASE 1-RELATED | 176 | 601 | - | - | |
Lsi11g01320 | 875 | Gene3D | PAS domain | 194 | 355 | - | - | |
Lsi11g01320 | 875 | CDD | PAS | 206 | 295 | IPR000014 | - | |
Lsi11g01320 | 875 | MobiDBLite | consensus disorder prediction | 100 | 123 | - | - | |
Lsi11g01320 | 875 | Gene3D | Phosphorylase Kinase; domain 1 | 602 | 639 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi11g01320 | Lsi-Chr11:21818657 | Lsi05g02229 | Lsi-Chr5:28852635 | 9.63E-63 | dispersed | |
Lsi04g00459 | Lsi-Chr4:4356328 | Lsi11g01320 | Lsi-Chr11:21818657 | 9.18E-21 | transposed | |
Lsi10g01321 | Lsi-Chr10:17417465 | Lsi11g01320 | Lsi-Chr11:21818657 | 8.11E-17 | transposed | |
Lsi11g00764 | Lsi-Chr11:8612074 | Lsi11g01320 | Lsi-Chr11:21818657 | 2.27E-06 | transposed | |
Lsi10g00018 | Lsi-Chr10:296026 | Lsi11g01320 | Lsi-Chr11:21818657 | 8.84E-106 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84049 | PF00069 | Pkinase | 2.10E-38 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01320 | K20715 | - | csv:101213364 | 910.212 |