Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01327 ATGTTGTCTACATGGGAGCTCATTCCCACGACGGTCGAAAACCGGCAAATATCGTCACCAATTCTCACCATGAATTCCTCCGACCGTTTCTCGAAAGGGGTGTGGCCAGAATCAAAGAGCTTTAGTGATTATGATGATTTGGGACCAATTCCCCTTAGGAAATTAATCGGAGCAAGATATTTCAACAAAGGATATGAATCCGTCGTCGGCCCTCTCAATTCTTCGTTCAATTCGCCGAGGGACAAAGAAGGGCATGGTTCTCATACCTTGTCCACGGCGGGCGGCAACTTCGTCGTCGGAGCTAGCGTTTTCGGCTTGGGAAATGGCACCGCCAAGGGCGGATCACCAAGGGCTCGCGTGGCCGCTTACAAGGTCTGCTGGCCTCCAGCGGCCGGAAATGAGTGCTTCGATGCCGATATATTGGCGGCGTTTGATTTGGCGATCCACGACGGCGTCGACGTGTTGTCGGTGTCGCTTGGAGGAGATTCGAATCCGTTGTTTAACGATAGTGTAGCCATTGGCTCATTCCACGCCGTGAAGCATGGGATTGTGGTGATTTGCTCTGCCGGAAATTCAGGACCGGCAGCCGGTTCGGTGACCAATATTGCGCCCTGGCAGATCACCGTCGGAGCCAGCACCATGGACAGGAAGTTCCCTAGTCTTGTCGTTCTTGGGAACAAGAAGCAGATTGAGGGTGAAAGCCTGTCCCAAGAAGCTTTGCCAAGCAGGACGTTCTATCCACTCATGAGTGCTGCGGATGTTAGATTAGCCAATGCATCAGCTCATGAAGCTCAATTGTGTAAAGCTGGTACACTTGATCCTATGAAGGCCAAGGGAAAGATCCTCGTCTGCCTTCGTGGTGATAATGCAAGAGTCGACAAGGGTGAGCAAGCACTCTTGGCTGGTGCTGTGGGCATGATTCTCGCCAATAATGATCTTAGTGGGAATGAAATCCTTGCTGATCCACATCCTGATGTTACAGCTCCTGGGCTGAGTGTTATAGCTGCTTACACTGAAGCAGAAGGACCTACAAATCAAGAATATGATAATCGTCGGGTTCCTTTTAACTCAGTATCAGGAACTTCCATGTCATGCCCTCATGTTTCTGGTATTGCTGGTCTTCTCAGGACTCTTTACCCTCATTGGAGTCCTGCAGCTATAAAATCTGCCATCATGACCACAGCAAGCACTTTAGACAACAACTTCGAGCCGCTTCTCAACGCGTCCTACTCTGTAGCCACACCATTCAACTATGGAGCAGGACACGTTCATCCAAATGGTGCTACAGATCCTGGCTTGGTCTATGACATAGAGGTTAATGAATATCTGTTATTTCTATGTGCATTAGGATATAACCAAGCTCAAATATCACAATTCTCCAATGGTCCCTTCAATTGCTCGGAGCCTATTAGTCTTATGAATCTCAACTACCCTTCAATTACTGTCCCTAAGCTCTCTAGATCGATCACAATTACTCGAAGACTAAAGAATGTCGGTTCTCCTGGAATGTACAAAGCCGAGATAAGAAAACCGGCTGGGATATCAGTTTGGGTTAAGCCAAAGACGTTGAACTTCACAAGATTAGGTGAAGAGCAAAGCTTCAAAGTTTTTATGAAAGTCAAGGAACAGAATGTAGCAAAGAAGAACTATGTATATGGTGATTTGATATGGTCAGATGACGACGATGACTCTAGTTTGAGTCCTCTTTGTGCTCTTTAA 1719 47.41 MLSTWELIPTTVENRQISSPILTMNSSDRFSKGVWPESKSFSDYDDLGPIPLRKLIGARYFNKGYESVVGPLNSSFNSPRDKEGHGSHTLSTAGGNFVVGASVFGLGNGTAKGGSPRARVAAYKVCWPPAAGNECFDADILAAFDLAIHDGVDVLSVSLGGDSNPLFNDSVAIGSFHAVKHGIVVICSAGNSGPAAGSVTNIAPWQITVGASTMDRKFPSLVVLGNKKQIEGESLSQEALPSRTFYPLMSAADVRLANASAHEAQLCKAGTLDPMKAKGKILVCLRGDNARVDKGEQALLAGAVGMILANNDLSGNEILADPHPDVTAPGLSVIAAYTEAEGPTNQEYDNRRVPFNSVSGTSMSCPHVSGIAGLLRTLYPHWSPAAIKSAIMTTASTLDNNFEPLLNASYSVATPFNYGAGHVHPNGATDPGLVYDIEVNEYLLFLCALGYNQAQISQFSNGPFNCSEPISLMNLNYPSITVPKLSRSITITRRLKNVGSPGMYKAEIRKPAGISVWVKPKTLNFTRLGEEQSFKVFMKVKEQNVAKKNYVYGDLIWSDDDDDSSLSPLCAL 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21876001 21888610 - Lsi11G013270.1 Lsi11g01327 674494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01327 572 CDD PA_subtilisin_like 222 324 - -
Lsi11g01327 572 ProSitePatterns Serine proteases, subtilase family, serine active site. 360 370 IPR023828 -
Lsi11g01327 572 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 324 561 IPR045051 -
Lsi11g01327 572 SUPERFAMILY Subtilisin-like 34 433 IPR036852 GO:0004252|GO:0006508
Lsi11g01327 572 ProSiteProfiles Serine proteases, subtilase domain profile. 1 429 - -
Lsi11g01327 572 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 324 561 - -
Lsi11g01327 572 Pfam Fibronectin type-III domain 474 561 IPR041469 -
Lsi11g01327 572 Pfam PA domain 266 317 IPR003137 -
Lsi11g01327 572 PRINTS Subtilisin serine protease family (S8) signature 359 375 IPR015500 -
Lsi11g01327 572 PRINTS Subtilisin serine protease family (S8) signature 81 94 IPR015500 -
Lsi11g01327 572 Pfam Subtilase family 61 399 IPR000209 GO:0006508|GO:0008236
Lsi11g01327 572 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 321 IPR045051 -
Lsi11g01327 572 CDD Peptidases_S8_3 33 396 IPR034197 -
Lsi11g01327 572 Gene3D Peptidase S8/S53 domain 33 214 IPR036852 GO:0004252|GO:0006508
Lsi11g01327 572 Gene3D Peptidase S8/S53 domain 323 442 IPR036852 GO:0004252|GO:0006508
Lsi11g01327 572 SUPERFAMILY PA domain 274 316 IPR046450 -
Lsi11g01327 572 Gene3D - 446 571 - -
Lsi11g01327 572 Gene3D - 215 313 - -
Lsi11g01327 572 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 30 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01445 Lsi-Chr7:20991905 Lsi11g01327 Lsi-Chr11:21876001 0 dispersed
Lsi11g01327 Lsi-Chr11:21876001 Lsi07g01434 Lsi-Chr7:20880035 3.41E-80 dispersed
Lsi11g01327 Lsi-Chr11:21876001 Lsi02g02892 Lsi-Chr2:35145004 1.45E-128 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01327 - - mcha:111007513 816.224