Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01330 ATGGGTTACATATGTGATTTCTGTGGGCAACAAAGGTCAATTGTGTACTGCCGATCTGATGCTGCAGCTTTGTGCTTATCTTGTGACCGAAATGTTCACTCTGCTAACGCCTTGTCAAGGCGCCACTCGAGAACATTGTTATGTGATCGGTGCCATTTGCAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACGGCTGCGGAGCTCTCATCTATCTGGTCATTTGTTCTAGATCTCACTTCTGGAAGCGATGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAATGCTTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTAGATGAAACCAATGAATTCTCAAGTGTGGATAAATCAATTTGGTGTGGGTCCTCTTCAATGCCTCACATTATGGACCAATCAATTACTAGAGATGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAACTCGAAATTGAAGATGACCTCTACGAGACTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGTTTGTTCAGGATGAAAAGCTTATCTGCCGCTAAATCTGGTTGCCCTGGTCCGACTGCTGCAGAGGGGGCGTCAGGCGGCTTTGTTAAAAATGCGATGCAGCCTGCAACCAGTAATGCAGCATCGGCAGATTCCGTGATGAGTGCGAAGACGGAACCGGTTCTTTGTTATAACAATAAGCAAGAGCACTCTAGCCTATCATTTTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCCGGACTGTGGAGCTTCATCAATGCTTCTAATGGGAGAACCTCCATGGTGTTCTATGACCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCCGATACTAGAAGACGTGTCAAGGGGCGCTTTGTCAAAGCTGGAGAAGCTTATGACTATGATCCATTGAATCAAACCAGAAGCTACTGA 1224 44.12 MGYICDFCGQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHLQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLTSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFSSVDKSIWCGSSSMPHIMDQSITRDATSPKLHYPGTKGPELEIEDDLYETLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRMKSLSAAKSGCPGPTAAEGASGGFVKNAMQPATSNAASADSVMSAKTEPVLCYNNKQEHSSLSFSGMTGESSAGEHPDCGASSMLLMGEPPWCSMTTESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLNQTRSY 407
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 21919157 21924478 + Lsi11G013300.1 Lsi11g01330 674497
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01330 407 CDD Bbox1_BBX-like 4 47 - -
Lsi11g01330 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 407 - -
Lsi11g01330 407 ProSiteProfiles CCT domain profile. 350 392 IPR010402 GO:0005515
Lsi11g01330 407 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Lsi11g01330 407 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lsi11g01330 407 Pfam CCT motif 350 392 IPR010402 GO:0005515
Lsi11g01330 407 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lsi11g01330 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 407 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00003 Lsi-Chr7:60412 Lsi11g01330 Lsi-Chr11:21919157 3.90E-10 dispersed
Lsi10g00156 Lsi-Chr10:2515335 Lsi11g01330 Lsi-Chr11:21919157 5.37E-66 dispersed
Lsi10g00408 Lsi-Chr10:6209617 Lsi11g01330 Lsi-Chr11:21919157 1.48E-14 dispersed
Lsi11g00747 Lsi-Chr11:8272990 Lsi11g01330 Lsi-Chr11:21919157 4.71E-08 dispersed
Lsi11g01330 Lsi-Chr11:21919157 Lsi06g01109 Lsi-Chr6:21349276 9.93E-10 dispersed
Lsi10g00033 Lsi-Chr10:550051 Lsi11g01330 Lsi-Chr11:21919157 1.17E-177 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26203 PF06203 CCT 2.70E-16 CL0281 Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01330 - - csv:101216326 767.689