Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi11g01330 | ATGGGTTACATATGTGATTTCTGTGGGCAACAAAGGTCAATTGTGTACTGCCGATCTGATGCTGCAGCTTTGTGCTTATCTTGTGACCGAAATGTTCACTCTGCTAACGCCTTGTCAAGGCGCCACTCGAGAACATTGTTATGTGATCGGTGCCATTTGCAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACGGCTGCGGAGCTCTCATCTATCTGGTCATTTGTTCTAGATCTCACTTCTGGAAGCGATGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAATGCTTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTAGATGAAACCAATGAATTCTCAAGTGTGGATAAATCAATTTGGTGTGGGTCCTCTTCAATGCCTCACATTATGGACCAATCAATTACTAGAGATGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAACTCGAAATTGAAGATGACCTCTACGAGACTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGTTTGTTCAGGATGAAAAGCTTATCTGCCGCTAAATCTGGTTGCCCTGGTCCGACTGCTGCAGAGGGGGCGTCAGGCGGCTTTGTTAAAAATGCGATGCAGCCTGCAACCAGTAATGCAGCATCGGCAGATTCCGTGATGAGTGCGAAGACGGAACCGGTTCTTTGTTATAACAATAAGCAAGAGCACTCTAGCCTATCATTTTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCCGGACTGTGGAGCTTCATCAATGCTTCTAATGGGAGAACCTCCATGGTGTTCTATGACCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCCGATACTAGAAGACGTGTCAAGGGGCGCTTTGTCAAAGCTGGAGAAGCTTATGACTATGATCCATTGAATCAAACCAGAAGCTACTGA | 1224 | 44.12 | MGYICDFCGQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHLQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLTSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFSSVDKSIWCGSSSMPHIMDQSITRDATSPKLHYPGTKGPELEIEDDLYETLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRMKSLSAAKSGCPGPTAAEGASGGFVKNAMQPATSNAASADSVMSAKTEPVLCYNNKQEHSSLSFSGMTGESSAGEHPDCGASSMLLMGEPPWCSMTTESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLNQTRSY | 407 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 21919157 | 21924478 | + | Lsi11G013300.1 | Lsi11g01330 | 674497 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi11g01330 | 407 | CDD | Bbox1_BBX-like | 4 | 47 | - | - | |
| Lsi11g01330 | 407 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE | 1 | 407 | - | - | |
| Lsi11g01330 | 407 | ProSiteProfiles | CCT domain profile. | 350 | 392 | IPR010402 | GO:0005515 | |
| Lsi11g01330 | 407 | ProSiteProfiles | Zinc finger B-box type profile. | 43 | 90 | IPR000315 | GO:0008270 | |
| Lsi11g01330 | 407 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Lsi11g01330 | 407 | Pfam | CCT motif | 350 | 392 | IPR010402 | GO:0005515 | |
| Lsi11g01330 | 407 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
| Lsi11g01330 | 407 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 10 | 1 | 407 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi07g00003 | Lsi-Chr7:60412 | Lsi11g01330 | Lsi-Chr11:21919157 | 3.90E-10 | dispersed | |
| Lsi10g00156 | Lsi-Chr10:2515335 | Lsi11g01330 | Lsi-Chr11:21919157 | 5.37E-66 | dispersed | |
| Lsi10g00408 | Lsi-Chr10:6209617 | Lsi11g01330 | Lsi-Chr11:21919157 | 1.48E-14 | dispersed | |
| Lsi11g00747 | Lsi-Chr11:8272990 | Lsi11g01330 | Lsi-Chr11:21919157 | 4.71E-08 | dispersed | |
| Lsi11g01330 | Lsi-Chr11:21919157 | Lsi06g01109 | Lsi-Chr6:21349276 | 9.93E-10 | dispersed | |
| Lsi10g00033 | Lsi-Chr10:550051 | Lsi11g01330 | Lsi-Chr11:21919157 | 1.17E-177 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 26203 | PF06203 | CCT | 2.70E-16 | CL0281 | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi11g01330 | - | - | csv:101216326 | 767.689 |