Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01330 ATGGGTTACATATGTGATTTCTGTGGGCAACAAAGGTCAATTGTGTACTGCCGATCTGATGCTGCAGCTTTGTGCTTATCTTGTGACCGAAATGTTCACTCTGCTAACGCCTTGTCAAGGCGCCACTCGAGAACATTGTTATGTGATCGGTGCCATTTGCAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACGGCTGCGGAGCTCTCATCTATCTGGTCATTTGTTCTAGATCTCACTTCTGGAAGCGATGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAATGCTTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTAGATGAAACCAATGAATTCTCAAGTGTGGATAAATCAATTTGGTGTGGGTCCTCTTCAATGCCTCACATTATGGACCAATCAATTACTAGAGATGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAACTCGAAATTGAAGATGACCTCTACGAGACTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGTTTGTTCAGGATGAAAAGCTTATCTGCCGCTAAATCTGGTTGCCCTGGTCCGACTGCTGCAGAGGGGGCGTCAGGCGGCTTTGTTAAAAATGCGATGCAGCCTGCAACCAGTAATGCAGCATCGGCAGATTCCGTGATGAGTGCGAAGACGGAACCGGTTCTTTGTTATAACAATAAGCAAGAGCACTCTAGCCTATCATTTTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCCGGACTGTGGAGCTTCATCAATGCTTCTAATGGGAGAACCTCCATGGTGTTCTATGACCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCCGATACTAGAAGACGTGTCAAGGGGCGCTTTGTCAAAGCTGGAGAAGCTTATGACTATGATCCATTGAATCAAACCAGAAGCTACTGA 1224 44.12 MGYICDFCGQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHLQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLTSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFSSVDKSIWCGSSSMPHIMDQSITRDATSPKLHYPGTKGPELEIEDDLYETLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRMKSLSAAKSGCPGPTAAEGASGGFVKNAMQPATSNAASADSVMSAKTEPVLCYNNKQEHSSLSFSGMTGESSAGEHPDCGASSMLLMGEPPWCSMTTESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLNQTRSY 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21919157 21924478 + Lsi11G013300.1 Lsi11g01330 674497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01330 407 CDD Bbox1_BBX-like 4 47 - -
Lsi11g01330 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 407 - -
Lsi11g01330 407 ProSiteProfiles CCT domain profile. 350 392 IPR010402 GO:0005515
Lsi11g01330 407 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Lsi11g01330 407 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lsi11g01330 407 Pfam CCT motif 350 392 IPR010402 GO:0005515
Lsi11g01330 407 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lsi11g01330 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01330 - - - csv:101216326 767.689
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00003 Lsi-Chr7:60412 Lsi11g01330 Lsi-Chr11:21919157 3.90E-10 dispersed
Lsi10g00156 Lsi-Chr10:2515335 Lsi11g01330 Lsi-Chr11:21919157 5.37E-66 dispersed
Lsi10g00408 Lsi-Chr10:6209617 Lsi11g01330 Lsi-Chr11:21919157 1.48E-14 dispersed
Lsi11g00747 Lsi-Chr11:8272990 Lsi11g01330 Lsi-Chr11:21919157 4.71E-08 dispersed
Lsi11g01330 Lsi-Chr11:21919157 Lsi06g01109 Lsi-Chr6:21349276 9.93E-10 dispersed
Lsi10g00033 Lsi-Chr10:550051 Lsi11g01330 Lsi-Chr11:21919157 1.17E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g737 . Blo15g00433 . . Bpe12g00169 Bpe15g00764 Bma03g00658 Bma08g00690 . Cmo19g00853 Cma02g00242 Cma20g00703 . . . Cpe15g00673 Cpe04g00659 Bhi05g01505 . . Lac12g0415 Hepe02g0327 . . Cla02g00307 Cam02g0316 Cec02g0317 Cco02g0319 Clacu02g0307 Cmu02g0306 Cre02g0639 Cone3ag1271 . Cone8ag1358 Cone12ag1303 . Csa07g00235 Chy11g00733 Cme01g00573 . Blo13g00448 Bda14g00661 . . Bpe07g00668 Bma02g01294 Bma12g00873 . Cmo02g00244 . . Cma19g00837 Car11g01444 Car19g00649 . Cpe05g01383 Bhi10g01288 . . . Hepe08g0372 . . . . . . . . . Lsi11g01330 Csa06g00975 Chy01g00545 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01266 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.3 6.0e-81 298.1
Lsi06g01109 CCT 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.1e-55 214.2
Lsi06g01109 CCT 5 374 C2C2-CO-like Transcription Factor Family AT5G57660 50.9 7.0e-66 248.1
Lsi08g01266 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.3 4.3e-55 212.2
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 2.3e-91 332.8
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 4.7e-89 325.1
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.4e-88 323.6
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 3.4e-87 318.9
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.4e-88 323.6
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 3.4e-87 318.9
Lsi11g01136 . 1 207 C2C2-CO-like Transcription Factor Family AT1G75540 55.0 5.4e-52 201.8
Lsi07g00290 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.9 6.1e-77 284.6
Lsi07g00267 CCT,ECH 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 7.1e-56 213.8
Lsi01g00620 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 4.5e-50 194.5
Lsi07g00267 CCT,ECH 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 64.5 1.1e-57 219.9
Lsi01g00620 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 1.4e-49 193.0
Lsi11g01136 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 7.7e-56 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26203 PF06203 CCT 2.70E-16 CL0281 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01330 Lsi_Chr11 FPKM 6.738612 7.648177 8.856711 7.273138 10.55794 9.999825 11.014522 9.745099 11.178741 10.263172