Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01333 | ATGTTTCTGGTGGAAGATTTTGAAATTGGATCTTTAGCCATAGGGTTTGCTTTTACAGAAATCCCATTCTTGAATGGTAGCTTTCAACTAGTGGATCATGATTCGTGTTTTGCTTCTGCTGATCTCTATTTTCATCTTCCAGTTCGTACTTTCTCTGATGTGAAGAAAGGCTTGCTTGCAAGTTGCAACCTCTTAATCATTGTTCTCCCAGCTCCATCTGAAGGGGTTCTGAATGTGATTCTTGTAAACACTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCATCCTTAGTCCCATCAACAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATTCTAATCTTGGCTCCTCTTGGAGTTACCTTGAGATTTTTCGAAACCGATATCCAAGTATCAGATTTGATAAAGTACAGGGCTCAGAACGTTGTGAACATGATTGCTCTGTCTGTTTAACTCAATTTGAACCTGAATCTGAGACAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATCGTACTCTTAAAGACAGTCGTGAACGCGTTTCCTACCTTCGTCGTTTCTCTGCTTCTGGCTTCTGCCTTTAGCTTTGAGTTAATGCACTGTTACTTCACTTTCTTTGTACATGGAATTGGCTGA | 747 | 41.23 | MFLVEDFEIGSLAIGFAFTEIPFLNGSFQLVDHDSCFASADLYFHLPVRTFSDVKKGLLASCNLLIIVLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLIVLLKTVVNAFPTFVVSLLLASAFSFELMHCYFTFFVHGIG | 248 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 21947612 | 21948786 | + | Lsi11G013330.1 | Lsi11g01333 | 674500 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01333 | 248 | SMART | ring_2 | 162 | 203 | IPR001841 | - | |
Lsi11g01333 | 248 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 208 | IPR013083 | - | |
Lsi11g01333 | 248 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 68 | 209 | - | - | |
Lsi11g01333 | 248 | Pfam | Ring finger domain | 161 | 204 | IPR001841 | - | |
Lsi11g01333 | 248 | PANTHER | - | 68 | 209 | IPR044249 | - | |
Lsi11g01333 | 248 | ProSiteProfiles | Zinc finger RING-type profile. | 162 | 204 | IPR001841 | - | |
Lsi11g01333 | 248 | SUPERFAMILY | RING/U-box | 154 | 210 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi11g01333 | Lsi-Chr11:21947612 | Lsi09g01587 | Lsi-Chr9:23986061 | 4.44E-11 | dispersed | |
Lsi05g00881 | Lsi-Chr5:15215200 | Lsi11g01333 | Lsi-Chr11:21947612 | 1.12E-06 | transposed | |
Lsi10g00036 | Lsi-Chr10:574326 | Lsi11g01333 | Lsi-Chr11:21947612 | 2.32E-27 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01333 | K16285 | - | csv:101215843 | 262.692 |