Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01333 ATGTTTCTGGTGGAAGATTTTGAAATTGGATCTTTAGCCATAGGGTTTGCTTTTACAGAAATCCCATTCTTGAATGGTAGCTTTCAACTAGTGGATCATGATTCGTGTTTTGCTTCTGCTGATCTCTATTTTCATCTTCCAGTTCGTACTTTCTCTGATGTGAAGAAAGGCTTGCTTGCAAGTTGCAACCTCTTAATCATTGTTCTCCCAGCTCCATCTGAAGGGGTTCTGAATGTGATTCTTGTAAACACTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCATCCTTAGTCCCATCAACAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATTCTAATCTTGGCTCCTCTTGGAGTTACCTTGAGATTTTTCGAAACCGATATCCAAGTATCAGATTTGATAAAGTACAGGGCTCAGAACGTTGTGAACATGATTGCTCTGTCTGTTTAACTCAATTTGAACCTGAATCTGAGACAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATCGTACTCTTAAAGACAGTCGTGAACGCGTTTCCTACCTTCGTCGTTTCTCTGCTTCTGGCTTCTGCCTTTAGCTTTGAGTTAATGCACTGTTACTTCACTTTCTTTGTACATGGAATTGGCTGA 747 41.23 MFLVEDFEIGSLAIGFAFTEIPFLNGSFQLVDHDSCFASADLYFHLPVRTFSDVKKGLLASCNLLIIVLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLIVLLKTVVNAFPTFVVSLLLASAFSFELMHCYFTFFVHGIG 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21947612 21948786 + Lsi11G013330.1 Lsi11g01333 674500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01333 248 SMART ring_2 162 203 IPR001841 -
Lsi11g01333 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 208 IPR013083 -
Lsi11g01333 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 68 209 - -
Lsi11g01333 248 Pfam Ring finger domain 161 204 IPR001841 -
Lsi11g01333 248 PANTHER - 68 209 IPR044249 -
Lsi11g01333 248 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Lsi11g01333 248 SUPERFAMILY RING/U-box 154 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01333 Lsi-Chr11:21947612 Lsi09g01587 Lsi-Chr9:23986061 4.44E-11 dispersed
Lsi05g00881 Lsi-Chr5:15215200 Lsi11g01333 Lsi-Chr11:21947612 1.12E-06 transposed
Lsi10g00036 Lsi-Chr10:574326 Lsi11g01333 Lsi-Chr11:21947612 2.32E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01333 K16285 - csv:101215843 262.692