Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01345 ATGTCTTCAACGTCAACAAATAAGACTGTGTGTTCTAAGACCAGCTGCGACCGATCGAAACATGGGGTTCATGTGGTTGCACAAACCCCAATTGATGCAAAGCTTCATGTAGACTTTGAAGGTTCTGAAAGGTTCTTTGATTACTCTGCGTCGGTTGATTTCAACGCTGCATGTTCCACTAGCAATGTTCATGTCTCCACTGTACAGTCATACCTTCAAAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGATGGGGAAAACTTGTCTGTCCTTGCATATAGTGAAAATGCCCCTGAAATGTTGGACTTAGCCCCACACGCTGTGCCTAATATCGAGCAGCAAGAAGCTCTAACATTTGGAACAGATGTACGAACACTTTTTCGTTCCCCGGGAGCTGCAGCTTTACAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATTCTAGTCCATTGTAAAACTTCAGGTAAACCATTTTATGCAATTTTGCATCGAATAGACGTGGGATTAATTATAGATCTGGAACCAGTTAATCCAGCTGATGTGCCAGTGACTGCAGCTGGGGCATTGAAATCTTATAAGCTAGCAGCTAAAGCCATCTCAAAATTGCAGTCCTTGCCTAGTGGGAATATATCTCTTTTATGTGAGGTATTGGTCAAGGAGGTCAGCGATTTGACAGGTTACGATCGAGTAATGGTGTATAAATTCCATGATGACGAACATGGAGAAGTTGTAGCTGAATGCTGTCGATCGGACTTAGAACCATTTCTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTTTTTTTGAAGAATAAAGTTAGAATGATATGTGATTGTTTGGCACCTCCAGTTAAAGTGCTTCAAGACAGGAGATTGACTCAGCCATTAAGTCTATGTGGGTCTGCATTGAGGGCTCCTCATGGTTGTCATGCTCGGTATATGATGAATATGGGTTCCATTGCATCTCTTGTGATGTCTATTACGATCAATGAGAATGATAGTGAATCAGAGAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACAAGCCCTAGGTTTGTTCCATTTCCTTTGCGATATGCTTGTGAATTCTTGATTCAAGTATTTGGTATACAGATTAACAAAGAGGTGGAGTTGCAAGCTCAGTTGAAGGAAAAACACATATTGCGAATTCAAACAGTTCTTTGTGATATGCTGCTAAGAGATGCTCCGGTGGGGATTGTTACTCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTTCAGAAAGAAATTTTGGTTACTTGGAGTCACCCCCACAGAGGCACAAATTAGAAATATAGCTGAATGGCTTCTCAAAGACCATAGTGGAAGCACAGGTTTAAGTACTGATAGCCTCATTGAAGCTGGTTTCTATAGTGCTTCTGCACTTGGTGATGAGGTTTGTGGAATGGCTGCTGTTAGGATCACGTCTAAGGACTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATAAGGTGGGGTGGTGCAAAACATGATCCTGGTGATGAGGATGATGGAAGAATGATGCATCCGAGATCATCATTCAAGACTTTCCTGGAAGTGGTGAAGCGACGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCACTGCAATTAATATTACGAGGTTCTTTACAGGATGAAATTGAAGAAGAATGCAAGGTGATTACAAACGTCCCATTCCCACCAGTTGATGAGAAGACACAACAGTTGGATGAATTGCGCGTCATCACCAATGAGATGGTTCGCCTAATTGAGACGGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTTGGCAAGATCAATGGTTGGAACTCCAAAGCCACTGAGCTTACAGGATTGGCTATCCAGGAAGCCATTGGCATGCCCTTAGTTGATTGTCTGGTGAATGGTTCTGTTAAGGTGGTAAAGAAAATGCTGTCCTTGGCCATTCAAGGTATTGAAGAGAAGAACATTGAAATCAAACTCAAAACATTTGGAATTCCAGGACAGAATGGTCCGGTGATCTTAGAAGTTAACTCGTGTTGTAGCCGAGACCTAAACAATAATGTTGTAGGAATTTCTTTTATAGGGCAGGATGTTACGAAGCAGAAACAGGTAATGAACCAATACACCCAAATCCAAGGCGATTACACGGGGATTATGCGGAACCCATCTGCACTTATTCCTCCAATTTTTATGACCGATAGCGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGGTAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACGCTTGAAAACTTTGGCTGCCGTGTGAAAGATCACACATTGACCAAGCTTAGGATAATACTGCATAGAGTAATTTCAGGCCAGGATGCAGAGAAATTTTTGTTTAGGTTCTGTGATCGTGAAGGAAATTATGTTGAAACGTTACTCACTGCAAGCAAAAGGACTGATGCAGAGGGTAATATCACTGGGGTTTTCTTCTTCTTGCACGTGGCTAGTCCAGAACTTCAATATGCTTTGGAGATGCAGCGGATTTCAGAACAAGCTACAGCTGAAAATCTCCATAAATTGGCATATCTACGTCAAGAAATCCGAAAACCCCTCGATGGGATTACATTTATGCAGAATTTAATGAGTTCATCTGACTTGAGCAAAGAGCAAATGCGGCTACTTAAATTGAACACTTCGAGTCGGGAACAATTACACAAGATTGTTCATGATACTGATATCCAGAGTATTGAGGAATGTTTCATGGAAACAAACTGTAGCGAATTCAACCTTGGAGATGTTCTTGATGTCGTAACAAATCAAAACATGATTTTCAGCCAAGAGCGTGGGGTGAAGATCATTTGTGAATCACCTACTGACTTGTCATCTCTGCACTTATATGGAGATAACATAAGGCTACAGCAGGTGTTCTCTGAGTTCTTGACTAACACACTTCTCTTCACTTGCAAAGAATCATCAGTTGTCTTTAAAGCAACTCCAAGGAAGGAACGCATTGGGAAGGGAATCCACATTGTTCATCTTGAATTGAGGATCACCCATCCCGCTCCGGGAATTCCTCCACACTTAATCCGCGAGATGTTCGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCTTATACATAAGTCAGAAGCTTGTGAAGATCATGAATGGCACTGTACAGTATCTTCGAGAGGCCGAAACCTCGTCATTCATCATCCTCATAGAATTCCCCTTGGTAGAGCATATTGTCAAATGA 3366 41.89 MSSTSTNKTVCSKTSCDRSKHGVHVVAQTPIDAKLHVDFEGSERFFDYSASVDFNAACSTSNVHVSTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCKTSGKPFYAILHRIDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRSDLEPFLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQAQLKEKHILRIQTVLCDMLLRDAPVGIVTQSPNIMDLVKCDGAALYFRKKFWLLGVTPTEAQIRNIAEWLLKDHSGSTGLSTDSLIEAGFYSASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDEDDGRMMHPRSSFKTFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEIEEECKVITNVPFPPVDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLAIQEAIGMPLVDCLVNGSVKVVKKMLSLAIQGIEEKNIEIKLKTFGIPGQNGPVILEVNSCCSRDLNNNVVGISFIGQDVTKQKQVMNQYTQIQGDYTGIMRNPSALIPPIFMTDSDGRCLEWNDAMEKLSGFRRVEMTNRMLLGEVFTLENFGCRVKDHTLTKLRIILHRVISGQDAEKFLFRFCDREGNYVETLLTASKRTDAEGNITGVFFFLHVASPELQYALEMQRISEQATAENLHKLAYLRQEIRKPLDGITFMQNLMSSSDLSKEQMRLLKLNTSSREQLHKIVHDTDIQSIEECFMETNCSEFNLGDVLDVVTNQNMIFSQERGVKIICESPTDLSSLHLYGDNIRLQQVFSEFLTNTLLFTCKESSVVFKATPRKERIGKGIHIVHLELRITHPAPGIPPHLIREMFDDNNDSSKEGLGLYISQKLVKIMNGTVQYLREAETSSFIILIEFPLVEHIVK 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22083090 22089308 + Lsi11G013450.1 Lsi11g01345 674512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01345 1121 Gene3D PAS domain 761 872 - -
Lsi11g01345 1121 Gene3D - 403 576 IPR043150 -
Lsi11g01345 1121 PANTHER PHYTOCHROME C 1 1117 - -
Lsi11g01345 1121 CDD PAS 759 869 IPR000014 -
Lsi11g01345 1121 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1117 - -
Lsi11g01345 1121 Pfam PAS fold 618 732 IPR013767 GO:0006355
Lsi11g01345 1121 Pfam PAS fold 758 869 IPR013767 GO:0006355
Lsi11g01345 1121 Pfam GAF domain 220 398 IPR003018 GO:0005515
Lsi11g01345 1121 PIRSF Phytochrome_conventional 2 1121 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lsi11g01345 1121 Gene3D - 933 1109 IPR036890 -
Lsi11g01345 1121 SUPERFAMILY GAF domain-like 199 395 - -
Lsi11g01345 1121 ProSiteProfiles PAS repeat profile. 615 685 IPR000014 -
Lsi11g01345 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Lsi11g01345 1121 SMART pas_2 747 817 IPR000014 -
Lsi11g01345 1121 SMART pas_2 617 683 IPR000014 -
Lsi11g01345 1121 SMART gaf_1 219 408 IPR003018 GO:0005515
Lsi11g01345 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 737 IPR035965 -
Lsi11g01345 1121 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Lsi11g01345 1121 Pfam PAS fold 71 186 IPR013654 GO:0006355
Lsi11g01345 1121 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Lsi11g01345 1121 Gene3D PAS domain 603 747 - -
Lsi11g01345 1121 CDD PAS 626 732 IPR000014 -
Lsi11g01345 1121 SUPERFAMILY PYP-like sensor domain (PAS domain) 762 866 IPR035965 -
Lsi11g01345 1121 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1003 1109 IPR003594 -
Lsi11g01345 1121 ProSiteProfiles PAS repeat profile. 748 800 IPR000014 -
Lsi11g01345 1121 TIGRFAM sensory_box: PAS domain S-box protein 762 868 IPR000014 -
Lsi11g01345 1121 TIGRFAM sensory_box: PAS domain S-box protein 622 738 IPR000014 -
Lsi11g01345 1121 SMART HKATPase_4 1003 1117 IPR003594 -
Lsi11g01345 1121 Gene3D PAS domain 74 322 - -
Lsi11g01345 1121 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 960 1111 IPR036890 -
Lsi11g01345 1121 Gene3D - 200 559 IPR029016 -
Lsi11g01345 1121 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
Lsi11g01345 1121 PRINTS Phytochrome signature 618 634 IPR001294 GO:0006355|GO:0009584
Lsi11g01345 1121 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Lsi11g01345 1121 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Lsi11g01345 1121 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Lsi11g01345 1121 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Lsi11g01345 1121 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Lsi11g01345 1121 PRINTS Phytochrome signature 730 750 IPR001294 GO:0006355|GO:0009584
Lsi11g01345 1121 PRINTS Phytochrome signature 637 652 IPR001294 GO:0006355|GO:0009584
Lsi11g01345 1121 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Lsi11g01345 1121 PRINTS Phytochrome signature 710 727 IPR001294 GO:0006355|GO:0009584
Lsi11g01345 1121 ProSiteProfiles Histidine kinase domain profile. 898 1117 IPR005467 -
Lsi11g01345 1121 SUPERFAMILY GAF domain-like 406 586 - -
Lsi11g01345 1121 CDD HATPase_Phy-like 1002 1113 IPR044767 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00755 Lsi-Chr8:15879561 Lsi11g01345 Lsi-Chr11:22083090 0 dispersed
Lsi08g00758 Lsi-Chr8:15922089 Lsi11g01345 Lsi-Chr11:22083090 2.14E-83 dispersed
Lsi11g01345 Lsi-Chr11:22083090 Lsi04g01364 Lsi-Chr4:21402488 1.27E-06 dispersed
Lsi11g01345 Lsi-Chr11:22083090 Lsi10g00055 Lsi-Chr10:939481 6.68E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01345 - - csv:101211915 2100.09