Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01355 ATGCTGCTGACTTGTAGCAATCCTAATCCACTATATCTTTCCATCCCCAATATAACCTCCATTTTCACTACCATTCATCCTCGTCTAAAACCAGCCTTCAGCCCTCCTCTGGCATTGCATCAAACTTTTAAGAAGCTTCACACACTCATGGCCACCTCTGCTATCCAACAGTCTGCCTTCGCCGGCCAGGCTGCCTTGAAGCAATCCAATGAGCTTGTCCGAAGGGTCGGTGCTGTCGGTGGCGGCCGCTTCACCATGCGGCGAACAGTCAAGAGTGCTCCACAGAGCATATGGTATGGACCAGATCGCCCAAAATACTTGGGACCATTCTCTGAACAAACACCATCTTACCTGACTGGAGAGTTCCCTGGTGACTATGGATGGGACACAGCCGGTCTATCAGCAGATCCCGAGACTTTTGCAAAGAACCGTGAGCTTGAGGTGATCCACTCCCGATGGGCCATGCTTGGTGCATTAGGTTGCGTCTTCCCTGAACTCCTTGCAAAGAATGGCGTCCAGTTTGGTGAATCAGTTTGGTTCAAGGCTGGTTCTCAGATCTTCTCTGAGGGTGGTCTAGATTACCTTGGCAACCCAAACCTCATCCATGCTCAGAGTATCCTTGCAATCTGGGCTGTCCAGGTTGTGCTCATGGGCTTTGTTGAAGGTTACCGAGTTGGCGGTGGTCCCCTTGGTGAAGGACTGGACCCAATTTACCCAGGAGGCGCCTTCGACCCACTCGGGTTGGCAGATGACCCAGATGCATTTGCTGAGTTGAAGGTGAAGGAACTAAAGAATGGAAGGCTGGCGATGTTCTCCATGTTCGGATTCTTTGTCCAGGCTATTGTCACCGGAAAGGGTCCTATTGAGAATCTCTTTGACCATGTTGCAGATCCTGTTGCCAACAATGCATGGGCTTACGCTACCAACTTTGTCCCCGGAAAATGA 945 50.9 MLLTCSNPNPLYLSIPNITSIFTTIHPRLKPAFSPPLALHQTFKKLHTLMATSAIQQSAFAGQAALKQSNELVRRVGAVGGGRFTMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVQFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22168602 22170817 + Lsi11G013550.1 Lsi11g01355 674522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01355 314 SUPERFAMILY Chlorophyll a-b binding protein 97 311 - -
Lsi11g01355 314 Gene3D Chlorophyll a/b binding protein domain 105 307 - -
Lsi11g01355 314 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2.1, CHLOROPLASTIC-RELATED 50 314 - -
Lsi11g01355 314 Pfam Chlorophyll A-B binding protein 115 280 IPR022796 -
Lsi11g01355 314 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 50 314 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02433 Lsi-Chr4:31387743 Lsi11g01355 Lsi-Chr11:22168602 6.58E-11 dispersed
Lsi05g00685 Lsi-Chr5:9123085 Lsi11g01355 Lsi-Chr11:22168602 1.69E-124 dispersed
Lsi08g00191 Lsi-Chr8:4030824 Lsi11g01355 Lsi-Chr11:22168602 1.10E-57 dispersed
Lsi08g01472 Lsi-Chr8:22846371 Lsi11g01355 Lsi-Chr11:22168602 3.21E-32 dispersed
Lsi11g01355 Lsi-Chr11:22168602 Lsi01g00172 Lsi-Chr1:1668479 1.48E-150 transposed
Lsi11g01355 Lsi-Chr11:22168602 Lsi10g01537 Lsi-Chr10:19772142 1.41E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01355 K08913 - csv:101212963 526.939