Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01362 ATGCTCTTAGCTGTTATCAACTTTGCCGGGAAATTCATCGGACTTCTCTCAGCCGGAGCACCAAACACTGCTTCTTCAACTGTAACCATTTCAATTCCTTCTCTCTCTATCTTCTTCTTCTTCTTCTTCTTCATCTTCCTTACGGCGGTCTCTTCTCTCTTTTCTTCTTCATCGGAGCTTGAATTTGACTTCAATTTCTTCGTCTCTTCACTGACTTCGCTGGTCTTCTGCAGCTCTGATTCGCCTGCTCGAATTCCGAAGCCGGACTTGGGGGAAAAGTATGTGAATATTTTTCTCGTGTTTCTGAAATTGCAATCGGAGTTTTGTAATTTGGATCTTAATTATTCTGATCGGTTTCGGTATACAGCTAGACGTGGCGTGGCATCCAGTTTCTGTGTCAATCAAAGGGACCAGTTAGAGAATGAAGTTGATTCTGATCGATTGGAGCATGAACACAGTTCAGATAGTCAACCGCAAACGTCTCAGCACGATCCTGGTGGAACTAATGCATCAAAATCAGATCACAGAGGCACAGGGGCTGCCAGTAATGCACTTGAAGAAGCTGTCAAGCAGCCTGACGTTACAATCGAACAAGTGGATCGAGGAGAAATCTCTAATATAGTGACCGAGAAAGTGACCCATAAGCCAATTACTGCAGACCACTCCCAGTCTGATTTGAAAGTATGTAATACCTCTACTATACGAGAGAAAGTATCAGAGGATGGATATAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGAAATGTCTTTGTTAGAAGTTATTACAGATGTACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAAATCATAGACACTGTTTACTTTGGCCAGCATGATCACCCTAAACCTCAATCTCACATTCCAGTTGCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGATGAACATGCTTCTGGAAATTCTCAAGATAAGACCTCCATTGCGCTTGGCCAGACACCTCATCAAACTGAGCTAGCTGATATGCGTCAACCGTCATCAGTTATGGCCAGTGATAATGTAAAAGATGAAGCTTCGAAAAGGTCTAGGACTAATGATGAGGTTGACAGTGATGATACTACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATACTGATGTGACGGTAGCAGACAAGTCAACAGTTGAATCTCGGGTTGTTGTTCAAACTCCTAGTGAGGTTGACATCGTCAATGATGGATACCGCTGGCGGAAGTATGGACAGAAATTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTCATGATCCAAAGGTGGTGCTTACCACGTATGAGGGTCAGCATGATCATGATATGCCTCCTACAAGGACAGTGACGTTGAACTCAGCTGGATCCACAGCAGCCCATAGTGATGAGACAAAACCAAAATCGGTCGGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATGGCATTGTACTTGATATGGTGGTAAATCCTGGCCCTGGAGTTGCGAGTGGACAAAATAAGCAGTTGAAAGTAGCAATTGAAAGCTAA 1641 43.33 MLLAVINFAGKFIGLLSAGAPNTASSTVTISIPSLSIFFFFFFFIFLTAVSSLFSSSSELEFDFNFFVSSLTSLVFCSSDSPARIPKPDLGEKYVNIFLVFLKLQSEFCNLDLNYSDRFRYTARRGVASSFCVNQRDQLENEVDSDRLEHEHSSDSQPQTSQHDPGGTNASKSDHRGTGAASNALEEAVKQPDVTIEQVDRGEISNIVTEKVTHKPITADHSQSDLKVCNTSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKIIDTVYFGQHDHPKPQSHIPVAVGVVTMVEEKLDEHASGNSQDKTSIALGQTPHQTELADMRQPSSVMASDNVKDEASKRSRTNDEVDSDDTTPDLKREKKRCNTDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGQHDHDMPPTRTVTLNSAGSTAAHSDETKPKSVGSEGKLIEKNGKSNATEASDGIVLDMVVNPGPGVASGQNKQLKVAIES 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22221038 22224967 - Lsi11G013620.1 Lsi11g01362 674529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01362 546 Gene3D WRKY domain 400 466 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi11g01362 546 MobiDBLite consensus disorder prediction 142 196 - -
Lsi11g01362 546 MobiDBLite consensus disorder prediction 142 157 - -
Lsi11g01362 546 MobiDBLite consensus disorder prediction 158 178 - -
Lsi11g01362 546 MobiDBLite consensus disorder prediction 339 385 - -
Lsi11g01362 546 MobiDBLite consensus disorder prediction 481 517 - -
Lsi11g01362 546 PANTHER WRKY TRANSCRIPTION FACTOR 1 133 502 - -
Lsi11g01362 546 MobiDBLite consensus disorder prediction 356 385 - -
Lsi11g01362 546 MobiDBLite consensus disorder prediction 339 355 - -
Lsi11g01362 546 ProSiteProfiles WRKY domain profile. 408 473 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi11g01362 546 SUPERFAMILY WRKY DNA-binding domain 405 473 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi11g01362 546 Pfam WRKY DNA -binding domain 240 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi11g01362 546 Pfam WRKY DNA -binding domain 414 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi11g01362 546 SUPERFAMILY WRKY DNA-binding domain 235 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi11g01362 546 Gene3D WRKY domain 224 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi11g01362 546 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 133 502 IPR044810 GO:0003700
Lsi11g01362 546 SMART WRKY_cls 239 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi11g01362 546 SMART WRKY_cls 413 472 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi11g01362 546 ProSiteProfiles WRKY domain profile. 234 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01425 Lsi-Chr7:20782000 Lsi11g01362 Lsi-Chr11:22221038 4.99E-16 dispersed
Lsi11g01362 Lsi-Chr11:22221038 Lsi10g01469 Lsi-Chr10:18813088 2.55E-57 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26206 PF03106 WRKY 4.00E-26 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01362 K18834 - csv:101212482 703.36