Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01362 | ATGCTCTTAGCTGTTATCAACTTTGCCGGGAAATTCATCGGACTTCTCTCAGCCGGAGCACCAAACACTGCTTCTTCAACTGTAACCATTTCAATTCCTTCTCTCTCTATCTTCTTCTTCTTCTTCTTCTTCATCTTCCTTACGGCGGTCTCTTCTCTCTTTTCTTCTTCATCGGAGCTTGAATTTGACTTCAATTTCTTCGTCTCTTCACTGACTTCGCTGGTCTTCTGCAGCTCTGATTCGCCTGCTCGAATTCCGAAGCCGGACTTGGGGGAAAAGTATGTGAATATTTTTCTCGTGTTTCTGAAATTGCAATCGGAGTTTTGTAATTTGGATCTTAATTATTCTGATCGGTTTCGGTATACAGCTAGACGTGGCGTGGCATCCAGTTTCTGTGTCAATCAAAGGGACCAGTTAGAGAATGAAGTTGATTCTGATCGATTGGAGCATGAACACAGTTCAGATAGTCAACCGCAAACGTCTCAGCACGATCCTGGTGGAACTAATGCATCAAAATCAGATCACAGAGGCACAGGGGCTGCCAGTAATGCACTTGAAGAAGCTGTCAAGCAGCCTGACGTTACAATCGAACAAGTGGATCGAGGAGAAATCTCTAATATAGTGACCGAGAAAGTGACCCATAAGCCAATTACTGCAGACCACTCCCAGTCTGATTTGAAAGTATGTAATACCTCTACTATACGAGAGAAAGTATCAGAGGATGGATATAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGAAATGTCTTTGTTAGAAGTTATTACAGATGTACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAAATCATAGACACTGTTTACTTTGGCCAGCATGATCACCCTAAACCTCAATCTCACATTCCAGTTGCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGATGAACATGCTTCTGGAAATTCTCAAGATAAGACCTCCATTGCGCTTGGCCAGACACCTCATCAAACTGAGCTAGCTGATATGCGTCAACCGTCATCAGTTATGGCCAGTGATAATGTAAAAGATGAAGCTTCGAAAAGGTCTAGGACTAATGATGAGGTTGACAGTGATGATACTACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATACTGATGTGACGGTAGCAGACAAGTCAACAGTTGAATCTCGGGTTGTTGTTCAAACTCCTAGTGAGGTTGACATCGTCAATGATGGATACCGCTGGCGGAAGTATGGACAGAAATTAGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTCATGATCCAAAGGTGGTGCTTACCACGTATGAGGGTCAGCATGATCATGATATGCCTCCTACAAGGACAGTGACGTTGAACTCAGCTGGATCCACAGCAGCCCATAGTGATGAGACAAAACCAAAATCGGTCGGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATGGCATTGTACTTGATATGGTGGTAAATCCTGGCCCTGGAGTTGCGAGTGGACAAAATAAGCAGTTGAAAGTAGCAATTGAAAGCTAA | 1641 | 43.33 | MLLAVINFAGKFIGLLSAGAPNTASSTVTISIPSLSIFFFFFFFIFLTAVSSLFSSSSELEFDFNFFVSSLTSLVFCSSDSPARIPKPDLGEKYVNIFLVFLKLQSEFCNLDLNYSDRFRYTARRGVASSFCVNQRDQLENEVDSDRLEHEHSSDSQPQTSQHDPGGTNASKSDHRGTGAASNALEEAVKQPDVTIEQVDRGEISNIVTEKVTHKPITADHSQSDLKVCNTSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKIIDTVYFGQHDHPKPQSHIPVAVGVVTMVEEKLDEHASGNSQDKTSIALGQTPHQTELADMRQPSSVMASDNVKDEASKRSRTNDEVDSDDTTPDLKREKKRCNTDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKVVLTTYEGQHDHDMPPTRTVTLNSAGSTAAHSDETKPKSVGSEGKLIEKNGKSNATEASDGIVLDMVVNPGPGVASGQNKQLKVAIES | 546 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 22221038 | 22224967 | - | Lsi11G013620.1 | Lsi11g01362 | 674529 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01362 | 546 | Gene3D | WRKY domain | 400 | 466 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01362 | 546 | MobiDBLite | consensus disorder prediction | 142 | 196 | - | - | |
Lsi11g01362 | 546 | MobiDBLite | consensus disorder prediction | 142 | 157 | - | - | |
Lsi11g01362 | 546 | MobiDBLite | consensus disorder prediction | 158 | 178 | - | - | |
Lsi11g01362 | 546 | MobiDBLite | consensus disorder prediction | 339 | 385 | - | - | |
Lsi11g01362 | 546 | MobiDBLite | consensus disorder prediction | 481 | 517 | - | - | |
Lsi11g01362 | 546 | PANTHER | WRKY TRANSCRIPTION FACTOR 1 | 133 | 502 | - | - | |
Lsi11g01362 | 546 | MobiDBLite | consensus disorder prediction | 356 | 385 | - | - | |
Lsi11g01362 | 546 | MobiDBLite | consensus disorder prediction | 339 | 355 | - | - | |
Lsi11g01362 | 546 | ProSiteProfiles | WRKY domain profile. | 408 | 473 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01362 | 546 | SUPERFAMILY | WRKY DNA-binding domain | 405 | 473 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01362 | 546 | Pfam | WRKY DNA -binding domain | 240 | 296 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01362 | 546 | Pfam | WRKY DNA -binding domain | 414 | 470 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01362 | 546 | SUPERFAMILY | WRKY DNA-binding domain | 235 | 298 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01362 | 546 | Gene3D | WRKY domain | 224 | 299 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01362 | 546 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 133 | 502 | IPR044810 | GO:0003700 | |
Lsi11g01362 | 546 | SMART | WRKY_cls | 239 | 297 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01362 | 546 | SMART | WRKY_cls | 413 | 472 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01362 | 546 | ProSiteProfiles | WRKY domain profile. | 234 | 298 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g01425 | Lsi-Chr7:20782000 | Lsi11g01362 | Lsi-Chr11:22221038 | 4.99E-16 | dispersed | |
Lsi11g01362 | Lsi-Chr11:22221038 | Lsi10g01469 | Lsi-Chr10:18813088 | 2.55E-57 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26206 | PF03106 | WRKY | 4.00E-26 | CL0274 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01362 | K18834 | - | csv:101212482 | 703.36 |