Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01391 ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGTGAGCTTGTGTTTAAGGAAGACGGGCAGGAATATGCTCAAGTGCTCCGAATGCTAGGTAATGGTCGTTGCGAAGCAATGTGTATCGATGGGACTAAACGTCTTTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTCGTTGGTCTTCGTGACTATCAAGATGACAAAGCTGATGTGATTCTCAAATACATGCCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAACGAGGGTATCGTTGGGGGTATGGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATATAG 438 43.38 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22468655 22469092 - Lsi11G013910.1 Lsi11g01391 674558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01391 145 MobiDBLite consensus disorder prediction 1 25 - -
Lsi11g01391 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Lsi11g01391 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Lsi11g01391 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Lsi11g01391 145 Gene3D - 2 145 IPR012340 -
Lsi11g01391 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 1 145 - -
Lsi11g01391 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Lsi11g01391 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Lsi11g01391 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Lsi11g01391 145 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
Lsi11g01391 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Lsi11g01391 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00044 Lsi-Chr7:499096 Lsi11g01391 Lsi-Chr11:22468655 3.54E-89 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01391 K03236 - csv:101207840 273.092