Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01395 ATGGCGCGTGACCCGAATGGCTCTGCTGGCGGCGGTGCCAGTAACAACTCCCAGCGTGAGGAGGCCACTCTGAAGGTCCCATCGAAGGACCCGAAGAAGAAGGACGAGAAGAAGGAAGAGGATCTGTCGGAAGAGGATCTGGCCTTGAAACAACAGTTGGAGTTGTACGTGGAGAGAGTTCAGGACCCTGATCCTGGGTTGCAGAAACTTGCTCTTGAGAGTATGAGGCAGGAAATTCGAACCTCCACAAGCTCCATGACTTCTGTTCCAAAGCCTCTAAAATTCCTTCGCCCACATTATGGAACTTTGAAAGCTTATTATGAAACGATGGCAGACACAGATTTAAAGAAATACATGGCAGACATACTATCAGTATTGGCACTGACCATGTCCGCAGAGGGAGAACGGGAAAGCCTGAAATACAGATTATTAGGCTCAGAAGGTGATATTGGTTCATGGGGTCATGAGTATGTAAGGAACTTGGCTGGAGAGATTGCTCAAGAATACACCAAGCGACAGGGTGAAGAAGCTCCCATTGATGATTTGATGGAACTTGTTCAAGAAATTGTTGCTTTTCACATGAAACACAATGCCGAACCTGAAGCTGTTGATCTATTAATGGAGGTTAACTCCATTAGAACTGCAGCCCAAGTTTTCATTTGGGAAGATCTTTATGGCTTATGGTTCCAAGACGATCTTGAATCGTCTGCCCTGCCTACTATCAATGGTGGCGGTGTGACAAAGATCATATACAACATTGATGGCACACAAATACCGGAATCGAGCGGCAAGAGAACTGCGGCTTCTAGGAAGTCTGGAAGATCCCTGAGAGCTAAAGTTTTGTCTAGAGTTTTCTCAGAGGATTATGAGAGAGTACAAAGAAAAATATTGGATCCTAGGGGACAAGTCATAAGGCGATGGAATAAGATATTTTTAGTTGCTTGTTTAGTCTCTTTGTTTGTAGACCCTCTTTTCTTTTACTTGCCTGTGGTCAAGGATGAGGTATGCATCGATATAGGAGTAGGTCTTGAAGTCGTCCTCACAACTATACGATCAATAGCTGATGTTTTCTACACAATTCAGATTTTCATTAAGTTCCGTACAGCTTATGTTGCGCCCTCTTCTCGTGTTGAAGATCTTGATCTGTTAGTTGAGCATGTTGACAGTACAAATTTCAAAAGGACCTGTATCTATCTTACCAGTTCAGCCAAATATCTTCCTGGACCTGATGACATGCTAGCTTTGGACATTGCATACATGATATATCTAAAATTTGAAGAATATACCAATGCACTTCAGATTGCGTTGTTCCTTGACAACTTGCAGTATGTCAGGCAGATCTATCAATCCTGTGATGATTTGCAGCGTAAAAAGCAATTTTCGTATATACTTGCTCGACAGGGCACTTGTTTTGAGCTTGATGAGGAGATGTGTGCAGATGACGATGATAGAGAGGCATTGCAGGAAATCATCAATAATTCCAAACTAAGTGAAGGTTATCTCACCCTTGCTCGTGACATTGAAGTCATGGAGCCTAAATCTCCAGAAGACATCTATAAGGCACATTTGCTTGATGGCAGGGCCAGTGCTGGTGCAAGTGTTGATTCTGCTAGACAAAATTTGGCTGCTACCTTCGTCAATGCTTTTGTGAATGCTGGCTTTGGTCAGGATAAGTTAATGACAGTTGCATCCAGTGGTGCTTCTACAGGAAACTGGTTATTTAAGAATAAAGAACACGGGAAGATGAGTGCTGCAGCAAGTTTGGGTATGATTTTGCTTTGGGATGTGGATGCTGGACTTTCTCAAATTGACAAATTTTTGCACAGCGATGATAACCACGTTGTTGCTGGTGCATTGCTAGGAGTTGGTATTGTCAATTGTGCTATCAAGAATGATTGTGATCCTGCATTAGCACTTTTAATAGAATATGTTGACAAAGAAGATGCATCAACCCGTATAGGTGCAATAATGGGCTTGGGCATTACGTATGCTGGAACTCAAAATGAGCAGCGCTTTGTCTCTGGCTCTAAAGTGGTGGTCGTCGTTTGTTTCACTTATGGGTTTTCAGTTAATGGTTTGAAGTTGCTGCTACTTGTGGTTTTCTTGGGAGTTGATAGGCCTTTTGGTCGGCTACGTCGAAAACTGACCCCTATATTAAATGATTCAAGAGCTTCACTTGATGTGATTGCATTTACTTCACTCTCATTGGGCTTAATATATCTTGGTTCCTGCAACGAGGAGGTTGCTCAAGCAATCATATTTGCATTAATGGATCGAAATGAGTCTGAATTGGGGGAGGCTCTAGGTCGCCTTCTACCACTTAGCCTTGGTCTTCTATACCTTGGAAAGCAGGAAAGTGTGGAGGCCACAGCTGAGGTTTCCAAGACATTTAACGAAAAAATCAGAAAATATTGCGACATGACATTGCTCTCGTGTGCATATGCTGGAACTGGGAATGTACTTAAGGTTCAAAACCTTCTTGGTCATTGTTCTCAACATCTTGAGAAGGGTGAAAGCCACCAAGGAGCTGCTGTGCTTGGAATTGCAATGGTGGCAATGGCTGAAGAATTGGGTTTGGAGATGGCAATTCGTTCATTAGAGCATCTTTTGCAGTACGGGGAGCAAAATATTCGTCGTGCTGTTCCCTTGGCTCTTGGTCTCCTTTGCATCTCAAACCCCAAGGTTAATGTTATGGACACGTTAAGCAGACTGAGCCATGATACAGATTCCGAAGTAGCCATGGCAGCAGTAATCTCCTTAGGTTTGATTGGTGCGGGAACCAATAATGCAAGAATAGCTGGCATGCTTCGAAATCTTTCGAGTTATTACTACAAAGATGCGAGCCTTCTTTTTTGTGTCAGGATTGCCCAAGGGCTTGTACATTTGGGGAAGGGCCTGTTAACTCTTAATCCTTATCATTCTGACCGATTCTTATTAGCACCGACCGCGCTTGCAGGTTTAATAATTACGTTGCATGCATGTCTTGACATGAAAGCCATTATCCTGGGGAAATATCATTATGTGCTCTACTACCTTGTCTTGGCAATGCAGCCGAGAATGCTCTTGACTGTGGACGAGAATCTTAAGCCTCTTTCAGTACCTGTTCGGGTGGGTCAGGCTGTTGACGTCGTTGGACAGGCGGGTCGGCCAAAGACAATCACTGGTTTCCAAACTCACTCAACCCCAGTTCTTCTTGCTGCTGGTGACAGGGCAGAACTGGCCACTGAGAAGTACATTCCTCTTTCGCCAATCCTAGAAGGATTCGTCGTTTTACAGGAGAACCCAGAATACAGAGAAGAACAGTAG 3306 43.77 MARDPNGSAGGGASNNSQREEATLKVPSKDPKKKDEKKEEDLSEEDLALKQQLELYVERVQDPDPGLQKLALESMRQEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMADTDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYTKRQGEEAPIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVNSIRTAAQVFIWEDLYGLWFQDDLESSALPTINGGGVTKIIYNIDGTQIPESSGKRTAASRKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQVIRRWNKIFLVACLVSLFVDPLFFYLPVVKDEVCIDIGVGLEVVLTTIRSIADVFYTIQIFIKFRTAYVAPSSRVEDLDLLVEHVDSTNFKRTCIYLTSSAKYLPGPDDMLALDIAYMIYLKFEEYTNALQIALFLDNLQYVRQIYQSCDDLQRKKQFSYILARQGTCFELDEEMCADDDDREALQEIINNSKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVASSGASTGNWLFKNKEHGKMSAAASLGMILLWDVDAGLSQIDKFLHSDDNHVVAGALLGVGIVNCAIKNDCDPALALLIEYVDKEDASTRIGAIMGLGITYAGTQNEQRFVSGSKVVVVVCFTYGFSVNGLKLLLLVVFLGVDRPFGRLRRKLTPILNDSRASLDVIAFTSLSLGLIYLGSCNEEVAQAIIFALMDRNESELGEALGRLLPLSLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCSQHLEKGESHQGAAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGAGTNNARIAGMLRNLSSYYYKDASLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLAPTALAGLIITLHACLDMKAIILGKYHYVLYYLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVVLQENPEYREEQ 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22488055 22498711 - Lsi11G013950.1 Lsi11g01395 674562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01395 1101 SUPERFAMILY ARM repeat 50 964 IPR016024 -
Lsi11g01395 1101 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 HOMOLOG 376 670 - -
Lsi11g01395 1101 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 HOMOLOG 16 211 - -
Lsi11g01395 1101 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 376 670 - -
Lsi11g01395 1101 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 711 1100 - -
Lsi11g01395 1101 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 16 211 - -
Lsi11g01395 1101 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 HOMOLOG 711 1100 - -
Lsi11g01395 1101 PIRSF 26S_protsm_Rpn1 3 223 IPR016643 GO:0000502|GO:0030234|GO:0042176
Lsi11g01395 1101 PIRSF 26S_protsm_Rpn1 374 842 IPR016643 GO:0000502|GO:0030234|GO:0042176
Lsi11g01395 1101 PIRSF 26S_protsm_Rpn1 835 1101 IPR016643 GO:0000502|GO:0030234|GO:0042176
Lsi11g01395 1101 Gene3D - 526 1002 IPR011989 -
Lsi11g01395 1101 Pfam RPN1 N-terminal domain 377 523 IPR040892 -
Lsi11g01395 1101 Pfam RPN1 N-terminal domain 53 215 IPR040892 -
Lsi11g01395 1101 MobiDBLite consensus disorder prediction 23 45 - -
Lsi11g01395 1101 MobiDBLite consensus disorder prediction 1 45 - -
Lsi11g01395 1101 Pfam 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal 1044 1097 IPR041433 -
Lsi11g01395 1101 SUPERFAMILY Voltage-gated potassium channels 298 744 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01395 K03028 PSMD2, RPN1; 26S proteasome regulatory subunit N1 - csv:101206940 1263.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01395 Lsi-Chr11:22488055 Lsi10g01258 Lsi-Chr10:16827240 3.46E-90 dispersed
Lsi11g01395 Lsi-Chr11:22488055 Lsi09g00029 Lsi-Chr9:279115 4.83E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g253 . . . . . . . . Cmo11g01871 Cmo19g00905 . . . . Sed05g2062 Cpe15g00718 Cpe04g00704 Bhi05g01397 Tan02g0405 Cmetu01g0284 Lac12g0522 Hepe02g0268 . . Cla02g00233 . . Cco02g0259 Clacu02g0244 Cmu02g0242 . . . Cone8ag1406 Cone12ag1347 . Csa07g00309 . Cme01g00485 . . . . . . . . . . . Cma11g01796 . Car11g01483 Car19g00694 . . . . . . . . . . . . . . . . Lsi11g01395 . Chy01g00474 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00029 . 49 1006 Ion Channels AT5G53130 57.3 3.1e-278 954.5
Lsi11g00684 . 11 732 Ion Channels AT5G53130 53.7 3.5e-213 738.4
Lsi03g01439 . 92 756 Ion Channels AT5G53130 55.5 1.7e-199 693.0
Lsi01g01343 . 122 400 Ion Channels AT5G53130 62.0 1.1e-94 344.7
Lsi07g00120 . 31 630 Ion Channels AT5G15410 59.4 2.6e-208 722.2
Lsi03g00156 . 27 423 Ion Channels AT5G15410 77.5 3.3e-179 625.5
Lsi03g00155 . 1 151 Ion Channels AT5G15410 75.5 1.6e-61 234.6
Lsi10g01258 . 157 710 Ion Channels AT2G46430 51.7 5.7e-160 561.6
Lsi01g01343 . 122 397 Ion Channels AT2G46430 62.7 1.5e-91 334.3
Lsi05g00683 . 39 544 Ion Channels AT5G54250 66.3 6.9e-227 783.9
Lsi03g00155 . 1 147 Ion Channels AT5G54250 52.2 1.7e-39 161.4
Lsi11g00684 . 11 731 Ion Channels AT5G57940 76.5 0.0e+00 1079.7
Lsi03g01439 . 92 757 Ion Channels AT5G57940 72.2 1.6e-279 958.7
Lsi10g01258 . 135 763 Ion Channels AT5G57940 52.4 1.3e-188 656.8
Lsi04g02203 . 74 691 Ion Channels AT5G57940 51.2 4.2e-179 625.2
Lsi01g01343 . 122 401 Ion Channels AT5G57940 65.7 1.4e-102 370.9
Lsi11g00684 . 1 732 Ion Channels AT2G23980 75.1 0.0e+00 1095.5
Lsi03g01439 . 1 757 Ion Channels AT2G23980 66.4 3.9e-276 947.6
Lsi10g01258 . 135 763 Ion Channels AT2G23980 52.6 1.4e-188 656.8
Lsi04g02203 . 72 691 Ion Channels AT2G23980 50.2 7.8e-176 614.4
Lsi03g01408 . 46 700 Ion Channels AT2G23980 50.1 1.9e-174 609.8
Lsi01g01343 . 122 401 Ion Channels AT2G23980 66.1 1.2e-104 377.9
Lsi11g00684 . 55 731 Ion Channels AT1G01340 53.9 1.3e-204 709.9
Lsi03g01439 . 82 757 Ion Channels AT1G01340 51.6 2.2e-196 682.6
Lsi10g01258 . 81 710 Ion Channels AT1G01340 50.8 4.8e-175 611.7
Lsi01g01343 . 122 397 Ion Channels AT1G01340 65.6 7.4e-99 358.6
Lsi11g00684 . 252 667 Ion Channels AT2G46440 50.9 1.9e-113 406.4
Lsi09g00029 . 660 964 Ion Channels AT2G46440 58.3 2.2e-93 339.7
Lsi01g01343 . 122 397 Ion Channels AT2G46440 54.3 1.1e-79 294.3
Lsi04g02203 . 10 689 Ion Channels AT2G24610 63.1 3.1e-249 858.2
Lsi03g01408 . 39 700 Ion Channels AT2G24610 62.3 1.1e-235 813.1
Lsi10g01258 . 145 764 Ion Channels AT2G24610 56.1 1.3e-202 703.4
Lsi11g00684 . 86 732 Ion Channels AT2G24610 55.4 2.9e-199 692.2
Lsi03g01439 . 121 757 Ion Channels AT2G24610 51.3 5.8e-179 624.8
Lsi06g01543 . 26 606 Ion Channels AT2G24610 51.5 1.6e-176 616.7
Lsi01g01343 . 123 397 Ion Channels AT2G24610 67.6 7.4e-102 368.6
Lsi10g01258 . 135 763 Ion Channels AT2G28260 74.7 2.0e-276 948.3
Lsi11g00684 . 71 731 Ion Channels AT2G28260 55.6 7.1e-202 700.7
Lsi03g01408 . 43 598 Ion Channels AT2G28260 57.4 3.2e-194 675.2
Lsi04g02203 . 61 691 Ion Channels AT2G28260 51.5 7.4e-183 637.5
Lsi03g01439 . 110 756 Ion Channels AT2G28260 52.2 3.1e-181 632.1
Lsi06g01543 . 28 524 Ion Channels AT2G28260 51.4 9.4e-162 567.4
Lsi01g01343 . 122 401 Ion Channels AT2G28260 73.9 1.9e-117 420.2
Lsi11g01395 . 273 389 Ion Channels AT2G28260 72.6 9.1e-40 162.2
Lsi03g01408 . 43 697 Ion Channels AT3G48010 62.9 5.0e-233 804.3
Lsi06g01543 . 13 604 Ion Channels AT3G48010 60.5 3.4e-213 738.4
Lsi04g02203 . 77 688 Ion Channels AT3G48010 54.2 3.2e-195 678.7
Lsi10g01258 . 151 710 Ion Channels AT3G48010 56.3 3.8e-188 655.2
Lsi11g00684 . 95 728 Ion Channels AT3G48010 51.3 1.1e-182 637.1
Lsi03g01439 . 132 733 Ion Channels AT3G48010 50.6 8.2e-167 584.3
Lsi01g01343 . 122 397 Ion Channels AT3G48010 62.0 7.1e-94 342.0
Lsi11g00684 . 94 729 Ion Channels AT4G01010 55.7 2.4e-203 705.7
Lsi03g01439 . 129 757 Ion Channels AT4G01010 55.0 2.7e-194 675.6
Lsi10g01258 . 155 710 Ion Channels AT4G01010 55.2 2.5e-176 615.9
Lsi01g01343 . 122 397 Ion Channels AT4G01010 64.5 1.6e-98 357.5
Lsi04g02203 . 1 694 Ion Channels AT4G30360 59.8 5.7e-240 827.4
Lsi03g01408 . 47 700 Ion Channels AT4G30360 60.4 2.4e-230 795.4
Lsi10g01258 . 156 763 Ion Channels AT4G30360 55.6 3.7e-199 691.8
Lsi11g00684 . 96 734 Ion Channels AT4G30360 54.6 1.8e-193 672.9
Lsi06g01543 . 7 610 Ion Channels AT4G30360 50.6 2.2e-183 639.4
Lsi03g01439 . 127 757 Ion Channels AT4G30360 52.3 3.3e-179 625.5
Lsi01g01343 . 122 396 Ion Channels AT4G30360 68.0 4.2e-102 369.4
Lsi11g00684 . 24 732 Ion Channels AT4G30560 76.2 2.0e-306 1048.1
Lsi03g01439 . 55 756 Ion Channels AT4G30560 67.8 1.1e-264 909.4
Lsi10g01258 . 135 763 Ion Channels AT4G30560 53.2 5.1e-185 644.8
Lsi04g02203 . 76 689 Ion Channels AT4G30560 51.0 1.2e-170 597.0
Lsi01g01343 . 122 401 Ion Channels AT4G30560 66.1 9.9e-104 374.8
Lsi03g01408 . 10 700 Ion Channels AT5G14870 67.8 1.2e-266 916.0
Lsi06g01543 . 22 610 Ion Channels AT5G14870 57.9 1.4e-203 706.4
Lsi04g02203 . 77 694 Ion Channels AT5G14870 55.5 3.0e-201 698.7
Lsi10g01258 . 120 711 Ion Channels AT5G14870 53.5 2.9e-188 655.6
Lsi11g00684 . 95 734 Ion Channels AT5G14870 50.3 1.6e-183 639.8
Lsi01g01343 . 122 401 Ion Channels AT5G14870 61.4 4.4e-96 349.4
Lsi11g00684 . 6 731 Ion Channels AT1G15990 70.2 4.0e-289 990.7
Lsi03g01439 . 7 755 Ion Channels AT1G15990 68.0 3.2e-286 981.1
Lsi10g01258 . 93 762 Ion Channels AT1G15990 50.1 1.7e-186 649.8
Lsi04g02203 . 44 691 Ion Channels AT1G15990 52.7 5.5e-182 634.8
Lsi01g01343 . 122 400 Ion Channels AT1G15990 67.4 7.9e-104 375.2
Lsi03g01439 . 249 755 Ion Channels AT1G19780 74.8 8.4e-212 733.4
Lsi11g00684 . 214 734 Ion Channels AT1G19780 70.0 4.3e-208 721.1
Lsi04g02203 . 175 688 Ion Channels AT1G19780 58.1 2.6e-152 535.8
Lsi03g01408 . 151 697 Ion Channels AT1G19780 51.4 6.8e-145 511.1
Lsi10g01258 . 273 766 Ion Channels AT1G19780 51.2 1.1e-139 493.8
Lsi06g01543 . 107 610 Ion Channels AT1G19780 50.7 2.8e-130 462.6
Lsi01g01343 . 122 400 Ion Channels AT1G19780 67.4 9.9e-104 374.4
Lsi02g00025 . 5 648 Ion Channels AT3G17700 58.4 5.4e-216 747.7
Lsi02g01840 . 1 353 Ion Channels AT5G55630 59.9 1.6e-113 406.4
Lsi02g01157 . 61 343 Ion Channels AT5G55630 60.8 2.4e-98 355.9
Lsi11g01558 . 46 715 Ion Channels AT4G03560 59.9 7.1e-238 820.5
Lsi06g00933 . 32 515 Ion Channels AT5G46240 60.4 3.4e-170 595.5
Lsi04g02148 . 25 504 Ion Channels AT5G46240 56.4 2.2e-153 539.7
Lsi05g00173 . 5 445 Ion Channels AT4G22200 72.1 9.1e-183 637.1
Lsi09g00948 . 18 581 Ion Channels AT3G02850 77.3 1.7e-261 898.7
Lsi06g00933 . 7 885 Ion Channels AT2G25600 59.7 9.7e-274 939.9
Lsi04g02148 . 26 880 Ion Channels AT2G25600 56.4 2.6e-255 878.6
Lsi09g00948 . 35 690 Ion Channels AT5G37500 66.4 9.2e-259 889.8
Lsi06g00933 . 111 886 Ion Channels AT2G26650 70.8 3.4e-296 1014.2
Lsi04g02148 . 119 881 Ion Channels AT2G26650 57.0 4.7e-237 817.8
Lsi04g02170 . 110 493 Ion Channels AT2G26650 54.9 2.0e-118 423.7
Lsi05g00173 . 55 442 Ion Channels AT2G26650 53.1 3.9e-114 409.5
Lsi06g00933 . 21 884 Ion Channels AT4G32500 58.3 8.1e-265 910.2
Lsi04g02148 . 18 878 Ion Channels AT4G32500 54.5 4.6e-244 841.3
Lsi04g02170 . 1 600 Ion Channels AT4G32650 56.7 1.0e-203 706.8
Lsi06g00933 . 20 515 Ion Channels AT4G18290 59.9 4.2e-171 598.6
Lsi04g02148 . 25 522 Ion Channels AT4G18290 54.5 1.8e-153 540.0
Lsi02g01840 . 1 353 Ion Channels AT5G55630 59.9 1.6e-113 406.4
Lsi02g01157 . 61 343 Ion Channels AT5G55630 60.8 2.4e-98 355.9
Lsi01g00177 . 159 631 Ion Channels AT4G18160 57.7 1.9e-121 433.0
Lsi08g01271 . 8 317 Ion Channels AT5G11210 51.8 1.6e-84 311.2
Lsi08g01271 . 8 315 Ion Channels AT5G11180 50.5 1.2e-86 318.5
Lsi01g00527 . 26 921 Ion Channels AT2G17260 56.1 6.3e-292 1000.3
Lsi10g00140 . 38 943 Ion Channels AT2G17260 53.2 5.9e-266 914.1
Lsi11g01292 . 2 521 Ion Channels AT2G17260 55.7 1.1e-158 557.8
Lsi04g01823 . 16 153 Ion Channels AT2G17260 63.8 9.1e-41 166.0
Lsi01g00527 . 19 779 Ion Channels AT4G35290 57.3 6.7e-263 903.7
Lsi10g00140 . 33 793 Ion Channels AT4G35290 54.7 4.0e-231 798.1
Lsi04g01826 . 28 835 Ion Channels AT4G35290 51.1 3.1e-223 771.9
Lsi11g01292 . 16 521 Ion Channels AT4G35290 54.8 7.7e-158 554.7
Lsi04g01823 . 16 156 Ion Channels AT4G35290 64.5 9.7e-44 175.6
Lsi01g00527 . 26 900 Ion Channels AT1G42540 61.3 0.0e+00 1088.9
Lsi04g01826 . 1 962 Ion Channels AT1G42540 59.2 0.0e+00 1079.7
Lsi10g00140 . 43 915 Ion Channels AT1G42540 55.8 2.8e-279 958.4
Lsi04g01823 . 16 153 Ion Channels AT1G42540 77.5 8.0e-53 206.1
Lsi10g00140 . 49 813 Ion Channels AT1G05200 67.4 4.6e-310 1060.4
Lsi01g00527 . 13 778 Ion Channels AT1G05200 54.7 3.2e-247 851.7
Lsi04g01826 . 28 834 Ion Channels AT1G05200 50.1 1.6e-217 753.1
Lsi04g01823 . 16 154 Ion Channels AT1G05200 61.4 4.5e-39 160.2
Lsi10g00140 . 36 644 Ion Channels AT2G32390 66.0 6.7e-248 853.6
Lsi01g00527 . 8 632 Ion Channels AT2G32390 50.6 5.4e-197 684.5
Lsi04g01826 . 26 620 Ion Channels AT2G32390 51.3 5.1e-179 624.8
Lsi01g00527 . 25 904 Ion Channels AT3G51480 62.5 0.0e+00 1135.9
Lsi10g00140 . 39 931 Ion Channels AT3G51480 52.3 4.4e-266 914.4
Lsi04g01826 . 5 965 Ion Channels AT3G51480 50.4 1.1e-264 909.8
Lsi04g01823 . 16 153 Ion Channels AT3G51480 67.4 1.5e-43 175.3
Lsi10g00138 . 162 751 Ion Channels AT2G32400 54.7 3.4e-189 659.1
Lsi04g01823 . 17 153 Ion Channels AT2G32400 57.7 4.2e-38 157.1
Lsi10g01258 . 135 763 Ion Channels AT2G28260 74.7 2.0e-276 948.3
Lsi11g00684 . 71 731 Ion Channels AT2G28260 55.6 7.1e-202 700.7
Lsi03g01408 . 43 598 Ion Channels AT2G28260 57.4 3.2e-194 675.2
Lsi04g02203 . 61 691 Ion Channels AT2G28260 51.5 7.4e-183 637.5
Lsi03g01439 . 110 756 Ion Channels AT2G28260 52.2 3.1e-181 632.1
Lsi06g01543 . 28 524 Ion Channels AT2G28260 51.4 9.4e-162 567.4
Lsi01g01343 . 122 401 Ion Channels AT2G28260 73.9 1.9e-117 420.2
Lsi11g01395 . 273 389 Ion Channels AT2G28260 72.6 9.1e-40 162.2
Lsi11g00684 . 6 731 Ion Channels AT1G15990 70.2 4.0e-289 990.7
Lsi03g01439 . 7 755 Ion Channels AT1G15990 68.0 3.2e-286 981.1
Lsi10g01258 . 93 762 Ion Channels AT1G15990 50.1 1.7e-186 649.8
Lsi04g02203 . 44 691 Ion Channels AT1G15990 52.7 5.5e-182 634.8
Lsi01g01343 . 122 400 Ion Channels AT1G15990 67.4 7.9e-104 375.2
Lsi10g01258 . 157 710 Ion Channels AT2G46430 51.7 5.7e-160 561.6
Lsi01g01343 . 122 397 Ion Channels AT2G46430 62.7 1.5e-91 334.3
Lsi11g00684 . 252 667 Ion Channels AT2G46440 50.9 1.9e-113 406.4
Lsi09g00029 . 660 964 Ion Channels AT2G46440 58.3 2.2e-93 339.7
Lsi01g01343 . 122 397 Ion Channels AT2G46440 54.3 1.1e-79 294.3
Lsi05g00683 . 39 544 Ion Channels AT5G54250 66.3 6.9e-227 783.9
Lsi03g00155 . 1 147 Ion Channels AT5G54250 52.2 1.7e-39 161.4
Lsi11g00684 . 55 731 Ion Channels AT1G01340 53.9 1.3e-204 709.9
Lsi03g01439 . 82 757 Ion Channels AT1G01340 51.6 2.2e-196 682.6
Lsi10g01258 . 81 710 Ion Channels AT1G01340 50.8 4.8e-175 611.7
Lsi01g01343 . 122 397 Ion Channels AT1G01340 65.6 7.4e-99 358.6
Lsi11g00684 . 1 732 Ion Channels AT2G23980 75.1 0.0e+00 1095.5
Lsi03g01439 . 1 757 Ion Channels AT2G23980 66.4 3.9e-276 947.6
Lsi10g01258 . 135 763 Ion Channels AT2G23980 52.6 1.4e-188 656.8
Lsi04g02203 . 72 691 Ion Channels AT2G23980 50.2 7.8e-176 614.4
Lsi03g01408 . 46 700 Ion Channels AT2G23980 50.1 1.9e-174 609.8
Lsi01g01343 . 122 401 Ion Channels AT2G23980 66.1 1.2e-104 377.9
Lsi03g01408 . 43 697 Ion Channels AT3G48010 62.9 5.0e-233 804.3
Lsi06g01543 . 13 604 Ion Channels AT3G48010 60.5 3.4e-213 738.4
Lsi04g02203 . 77 688 Ion Channels AT3G48010 54.2 3.2e-195 678.7
Lsi10g01258 . 151 710 Ion Channels AT3G48010 56.3 3.8e-188 655.2
Lsi11g00684 . 95 728 Ion Channels AT3G48010 51.3 1.1e-182 637.1
Lsi03g01439 . 132 733 Ion Channels AT3G48010 50.6 8.2e-167 584.3
Lsi01g01343 . 122 397 Ion Channels AT3G48010 62.0 7.1e-94 342.0
Lsi03g01408 . 10 700 Ion Channels AT5G14870 67.8 1.2e-266 916.0
Lsi06g01543 . 22 610 Ion Channels AT5G14870 57.9 1.4e-203 706.4
Lsi04g02203 . 77 694 Ion Channels AT5G14870 55.5 3.0e-201 698.7
Lsi10g01258 . 120 711 Ion Channels AT5G14870 53.5 2.9e-188 655.6
Lsi11g00684 . 95 734 Ion Channels AT5G14870 50.3 1.6e-183 639.8
Lsi01g01343 . 122 401 Ion Channels AT5G14870 61.4 4.4e-96 349.4
Lsi04g02203 . 10 689 Ion Channels AT2G24610 63.1 3.1e-249 858.2
Lsi03g01408 . 39 700 Ion Channels AT2G24610 62.3 1.1e-235 813.1
Lsi10g01258 . 145 764 Ion Channels AT2G24610 56.1 1.3e-202 703.4
Lsi11g00684 . 86 732 Ion Channels AT2G24610 55.4 2.9e-199 692.2
Lsi03g01439 . 121 757 Ion Channels AT2G24610 51.3 5.8e-179 624.8
Lsi06g01543 . 26 606 Ion Channels AT2G24610 51.5 1.6e-176 616.7
Lsi01g01343 . 123 397 Ion Channels AT2G24610 67.6 7.4e-102 368.6
Lsi04g02203 . 1 694 Ion Channels AT4G30360 59.8 5.7e-240 827.4
Lsi03g01408 . 47 700 Ion Channels AT4G30360 60.4 2.4e-230 795.4
Lsi10g01258 . 156 763 Ion Channels AT4G30360 55.6 3.7e-199 691.8
Lsi11g00684 . 96 734 Ion Channels AT4G30360 54.6 1.8e-193 672.9
Lsi06g01543 . 7 610 Ion Channels AT4G30360 50.6 2.2e-183 639.4
Lsi03g01439 . 127 757 Ion Channels AT4G30360 52.3 3.3e-179 625.5
Lsi01g01343 . 122 396 Ion Channels AT4G30360 68.0 4.2e-102 369.4
Lsi11g00684 . 24 732 Ion Channels AT4G30560 76.2 2.0e-306 1048.1
Lsi03g01439 . 55 756 Ion Channels AT4G30560 67.8 1.1e-264 909.4
Lsi10g01258 . 135 763 Ion Channels AT4G30560 53.2 5.1e-185 644.8
Lsi04g02203 . 76 689 Ion Channels AT4G30560 51.0 1.2e-170 597.0
Lsi01g01343 . 122 401 Ion Channels AT4G30560 66.1 9.9e-104 374.8
Lsi03g01439 . 249 755 Ion Channels AT1G19780 74.8 8.4e-212 733.4
Lsi11g00684 . 214 734 Ion Channels AT1G19780 70.0 4.3e-208 721.1
Lsi04g02203 . 175 688 Ion Channels AT1G19780 58.1 2.6e-152 535.8
Lsi03g01408 . 151 697 Ion Channels AT1G19780 51.4 6.8e-145 511.1
Lsi10g01258 . 273 766 Ion Channels AT1G19780 51.2 1.1e-139 493.8
Lsi06g01543 . 107 610 Ion Channels AT1G19780 50.7 2.8e-130 462.6
Lsi01g01343 . 122 400 Ion Channels AT1G19780 67.4 9.9e-104 374.4
Lsi02g00025 . 5 648 Ion Channels AT3G17700 58.4 5.4e-216 747.7
Lsi07g00120 . 31 630 Ion Channels AT5G15410 59.4 2.6e-208 722.2
Lsi03g00156 . 27 423 Ion Channels AT5G15410 77.5 3.3e-179 625.5
Lsi03g00155 . 1 151 Ion Channels AT5G15410 75.5 1.6e-61 234.6
Lsi11g00684 . 11 731 Ion Channels AT5G57940 76.5 0.0e+00 1079.7
Lsi03g01439 . 92 757 Ion Channels AT5G57940 72.2 1.6e-279 958.7
Lsi10g01258 . 135 763 Ion Channels AT5G57940 52.4 1.3e-188 656.8
Lsi04g02203 . 74 691 Ion Channels AT5G57940 51.2 4.2e-179 625.2
Lsi01g01343 . 122 401 Ion Channels AT5G57940 65.7 1.4e-102 370.9
Lsi11g00684 . 94 729 Ion Channels AT4G01010 55.7 2.4e-203 705.7
Lsi03g01439 . 129 757 Ion Channels AT4G01010 55.0 2.7e-194 675.6
Lsi10g01258 . 155 710 Ion Channels AT4G01010 55.2 2.5e-176 615.9
Lsi01g01343 . 122 397 Ion Channels AT4G01010 64.5 1.6e-98 357.5
Lsi09g00029 . 49 1006 Ion Channels AT5G53130 57.3 3.1e-278 954.5
Lsi11g00684 . 11 732 Ion Channels AT5G53130 53.7 3.5e-213 738.4
Lsi03g01439 . 92 756 Ion Channels AT5G53130 55.5 1.7e-199 693.0
Lsi01g01343 . 122 400 Ion Channels AT5G53130 62.0 1.1e-94 344.7
Lsi03g00391 . 1 624 Ion Channels AT5G40890 75.4 1.0e-269 926.0
Lsi05g00719 . 154 789 Ion Channels AT5G40890 55.3 1.9e-202 702.6
Lsi05g00719 . 49 789 Ion Channels AT5G33280 60.9 5.1e-271 930.6
Lsi11g00348 . 11 676 Ion Channels AT5G33280 60.9 4.6e-256 880.9
Lsi03g00391 . 3 619 Ion Channels AT5G33280 50.7 1.2e-176 617.1
Lsi05g00719 . 40 789 Ion Channels AT5G49890 76.3 0.0e+00 1139.4
Lsi11g00348 . 17 665 Ion Channels AT5G49890 52.4 4.0e-207 718.4
Lsi03g00391 . 1 619 Ion Channels AT5G49890 51.8 1.0e-181 634.0
Lsi03g00392 . 57 222 Ion Channels AT5G49890 52.4 7.7e-41 166.0
Lsi09g01334 . 1 760 Ion Channels AT5G26240 75.1 0.0e+00 1130.9
Lsi03g00391 . 1 620 Ion Channels AT3G27170 76.5 4.5e-275 944.1
Lsi05g00719 . 40 789 Ion Channels AT3G27170 54.5 5.6e-233 804.3
Lsi03g00392 . 57 222 Ion Channels AT3G27170 77.1 5.1e-69 259.6
Lsi11g01558 . 46 715 Ion Channels AT4G03560 59.9 7.1e-238 820.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008273 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01395 Lsi_Chr11 FPKM 51.383102 57.351013 69.068192 69.554153 62.856266 63.154552 66.861244 62.75198 64.588989 64.871033