Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01395 ATGGCGCGTGACCCGAATGGCTCTGCTGGCGGCGGTGCCAGTAACAACTCCCAGCGTGAGGAGGCCACTCTGAAGGTCCCATCGAAGGACCCGAAGAAGAAGGACGAGAAGAAGGAAGAGGATCTGTCGGAAGAGGATCTGGCCTTGAAACAACAGTTGGAGTTGTACGTGGAGAGAGTTCAGGACCCTGATCCTGGGTTGCAGAAACTTGCTCTTGAGAGTATGAGGCAGGAAATTCGAACCTCCACAAGCTCCATGACTTCTGTTCCAAAGCCTCTAAAATTCCTTCGCCCACATTATGGAACTTTGAAAGCTTATTATGAAACGATGGCAGACACAGATTTAAAGAAATACATGGCAGACATACTATCAGTATTGGCACTGACCATGTCCGCAGAGGGAGAACGGGAAAGCCTGAAATACAGATTATTAGGCTCAGAAGGTGATATTGGTTCATGGGGTCATGAGTATGTAAGGAACTTGGCTGGAGAGATTGCTCAAGAATACACCAAGCGACAGGGTGAAGAAGCTCCCATTGATGATTTGATGGAACTTGTTCAAGAAATTGTTGCTTTTCACATGAAACACAATGCCGAACCTGAAGCTGTTGATCTATTAATGGAGGTTAACTCCATTAGAACTGCAGCCCAAGTTTTCATTTGGGAAGATCTTTATGGCTTATGGTTCCAAGACGATCTTGAATCGTCTGCCCTGCCTACTATCAATGGTGGCGGTGTGACAAAGATCATATACAACATTGATGGCACACAAATACCGGAATCGAGCGGCAAGAGAACTGCGGCTTCTAGGAAGTCTGGAAGATCCCTGAGAGCTAAAGTTTTGTCTAGAGTTTTCTCAGAGGATTATGAGAGAGTACAAAGAAAAATATTGGATCCTAGGGGACAAGTCATAAGGCGATGGAATAAGATATTTTTAGTTGCTTGTTTAGTCTCTTTGTTTGTAGACCCTCTTTTCTTTTACTTGCCTGTGGTCAAGGATGAGGTATGCATCGATATAGGAGTAGGTCTTGAAGTCGTCCTCACAACTATACGATCAATAGCTGATGTTTTCTACACAATTCAGATTTTCATTAAGTTCCGTACAGCTTATGTTGCGCCCTCTTCTCGTGTTGAAGATCTTGATCTGTTAGTTGAGCATGTTGACAGTACAAATTTCAAAAGGACCTGTATCTATCTTACCAGTTCAGCCAAATATCTTCCTGGACCTGATGACATGCTAGCTTTGGACATTGCATACATGATATATCTAAAATTTGAAGAATATACCAATGCACTTCAGATTGCGTTGTTCCTTGACAACTTGCAGTATGTCAGGCAGATCTATCAATCCTGTGATGATTTGCAGCGTAAAAAGCAATTTTCGTATATACTTGCTCGACAGGGCACTTGTTTTGAGCTTGATGAGGAGATGTGTGCAGATGACGATGATAGAGAGGCATTGCAGGAAATCATCAATAATTCCAAACTAAGTGAAGGTTATCTCACCCTTGCTCGTGACATTGAAGTCATGGAGCCTAAATCTCCAGAAGACATCTATAAGGCACATTTGCTTGATGGCAGGGCCAGTGCTGGTGCAAGTGTTGATTCTGCTAGACAAAATTTGGCTGCTACCTTCGTCAATGCTTTTGTGAATGCTGGCTTTGGTCAGGATAAGTTAATGACAGTTGCATCCAGTGGTGCTTCTACAGGAAACTGGTTATTTAAGAATAAAGAACACGGGAAGATGAGTGCTGCAGCAAGTTTGGGTATGATTTTGCTTTGGGATGTGGATGCTGGACTTTCTCAAATTGACAAATTTTTGCACAGCGATGATAACCACGTTGTTGCTGGTGCATTGCTAGGAGTTGGTATTGTCAATTGTGCTATCAAGAATGATTGTGATCCTGCATTAGCACTTTTAATAGAATATGTTGACAAAGAAGATGCATCAACCCGTATAGGTGCAATAATGGGCTTGGGCATTACGTATGCTGGAACTCAAAATGAGCAGCGCTTTGTCTCTGGCTCTAAAGTGGTGGTCGTCGTTTGTTTCACTTATGGGTTTTCAGTTAATGGTTTGAAGTTGCTGCTACTTGTGGTTTTCTTGGGAGTTGATAGGCCTTTTGGTCGGCTACGTCGAAAACTGACCCCTATATTAAATGATTCAAGAGCTTCACTTGATGTGATTGCATTTACTTCACTCTCATTGGGCTTAATATATCTTGGTTCCTGCAACGAGGAGGTTGCTCAAGCAATCATATTTGCATTAATGGATCGAAATGAGTCTGAATTGGGGGAGGCTCTAGGTCGCCTTCTACCACTTAGCCTTGGTCTTCTATACCTTGGAAAGCAGGAAAGTGTGGAGGCCACAGCTGAGGTTTCCAAGACATTTAACGAAAAAATCAGAAAATATTGCGACATGACATTGCTCTCGTGTGCATATGCTGGAACTGGGAATGTACTTAAGGTTCAAAACCTTCTTGGTCATTGTTCTCAACATCTTGAGAAGGGTGAAAGCCACCAAGGAGCTGCTGTGCTTGGAATTGCAATGGTGGCAATGGCTGAAGAATTGGGTTTGGAGATGGCAATTCGTTCATTAGAGCATCTTTTGCAGTACGGGGAGCAAAATATTCGTCGTGCTGTTCCCTTGGCTCTTGGTCTCCTTTGCATCTCAAACCCCAAGGTTAATGTTATGGACACGTTAAGCAGACTGAGCCATGATACAGATTCCGAAGTAGCCATGGCAGCAGTAATCTCCTTAGGTTTGATTGGTGCGGGAACCAATAATGCAAGAATAGCTGGCATGCTTCGAAATCTTTCGAGTTATTACTACAAAGATGCGAGCCTTCTTTTTTGTGTCAGGATTGCCCAAGGGCTTGTACATTTGGGGAAGGGCCTGTTAACTCTTAATCCTTATCATTCTGACCGATTCTTATTAGCACCGACCGCGCTTGCAGGTTTAATAATTACGTTGCATGCATGTCTTGACATGAAAGCCATTATCCTGGGGAAATATCATTATGTGCTCTACTACCTTGTCTTGGCAATGCAGCCGAGAATGCTCTTGACTGTGGACGAGAATCTTAAGCCTCTTTCAGTACCTGTTCGGGTGGGTCAGGCTGTTGACGTCGTTGGACAGGCGGGTCGGCCAAAGACAATCACTGGTTTCCAAACTCACTCAACCCCAGTTCTTCTTGCTGCTGGTGACAGGGCAGAACTGGCCACTGAGAAGTACATTCCTCTTTCGCCAATCCTAGAAGGATTCGTCGTTTTACAGGAGAACCCAGAATACAGAGAAGAACAGTAG 3306 43.77 MARDPNGSAGGGASNNSQREEATLKVPSKDPKKKDEKKEEDLSEEDLALKQQLELYVERVQDPDPGLQKLALESMRQEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMADTDLKKYMADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYTKRQGEEAPIDDLMELVQEIVAFHMKHNAEPEAVDLLMEVNSIRTAAQVFIWEDLYGLWFQDDLESSALPTINGGGVTKIIYNIDGTQIPESSGKRTAASRKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQVIRRWNKIFLVACLVSLFVDPLFFYLPVVKDEVCIDIGVGLEVVLTTIRSIADVFYTIQIFIKFRTAYVAPSSRVEDLDLLVEHVDSTNFKRTCIYLTSSAKYLPGPDDMLALDIAYMIYLKFEEYTNALQIALFLDNLQYVRQIYQSCDDLQRKKQFSYILARQGTCFELDEEMCADDDDREALQEIINNSKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVASSGASTGNWLFKNKEHGKMSAAASLGMILLWDVDAGLSQIDKFLHSDDNHVVAGALLGVGIVNCAIKNDCDPALALLIEYVDKEDASTRIGAIMGLGITYAGTQNEQRFVSGSKVVVVVCFTYGFSVNGLKLLLLVVFLGVDRPFGRLRRKLTPILNDSRASLDVIAFTSLSLGLIYLGSCNEEVAQAIIFALMDRNESELGEALGRLLPLSLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCSQHLEKGESHQGAAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGAGTNNARIAGMLRNLSSYYYKDASLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLAPTALAGLIITLHACLDMKAIILGKYHYVLYYLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVVLQENPEYREEQ 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22488055 22498711 - Lsi11G013950.1 Lsi11g01395 674562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01395 1101 SUPERFAMILY ARM repeat 50 964 IPR016024 -
Lsi11g01395 1101 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 HOMOLOG 376 670 - -
Lsi11g01395 1101 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 HOMOLOG 16 211 - -
Lsi11g01395 1101 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 376 670 - -
Lsi11g01395 1101 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 711 1100 - -
Lsi11g01395 1101 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 16 211 - -
Lsi11g01395 1101 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 HOMOLOG 711 1100 - -
Lsi11g01395 1101 PIRSF 26S_protsm_Rpn1 3 223 IPR016643 GO:0000502|GO:0030234|GO:0042176
Lsi11g01395 1101 PIRSF 26S_protsm_Rpn1 374 842 IPR016643 GO:0000502|GO:0030234|GO:0042176
Lsi11g01395 1101 PIRSF 26S_protsm_Rpn1 835 1101 IPR016643 GO:0000502|GO:0030234|GO:0042176
Lsi11g01395 1101 Gene3D - 526 1002 IPR011989 -
Lsi11g01395 1101 Pfam RPN1 N-terminal domain 377 523 IPR040892 -
Lsi11g01395 1101 Pfam RPN1 N-terminal domain 53 215 IPR040892 -
Lsi11g01395 1101 MobiDBLite consensus disorder prediction 23 45 - -
Lsi11g01395 1101 MobiDBLite consensus disorder prediction 1 45 - -
Lsi11g01395 1101 Pfam 26S proteasome non-ATPase regulatory subunit RPN1 C-terminal 1044 1097 IPR041433 -
Lsi11g01395 1101 SUPERFAMILY Voltage-gated potassium channels 298 744 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01395 Lsi-Chr11:22488055 Lsi10g01258 Lsi-Chr10:16827240 3.46E-90 dispersed
Lsi11g01395 Lsi-Chr11:22488055 Lsi09g00029 Lsi-Chr9:279115 4.83E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01395 K03028 - csv:101206940 1263.06