Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01398 ATGCCTTCTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTTCTCCATTGGTCTCTTCCCTTAATCAAGAAGGACTGTATCTTCAGCGAGTCAAACTCGGTCTCTCCGATCCCACTCACTCCCTCTCTTCATGGAACCCTCGCGATGACACTCCCTGCAACTGGTCCGGCGTCACTTGCGATTCCGTTACTCGTTCTGTTATCGCCGTCGACCTCTCCGATTTTCAGCTTGCCGGACCGTTTCCCACTTTCATTTGTCGTCTTCCTTCTCTTTCTTCACTCTCTCTTTCCAATAACGTTATTAACGCTTCTCTTCCTGACGATGTCGCTTCCTGTTCTAGCCTCCAGTGGCTTAACTTGTCTCAGAATCTTCTTGCTGGTTCTATTCCCGATGCGATTTCCAAGATCTCGAATCTTCGTTCACTGGATCTCTCTGGAAATAATTTTTCCGGGGAGATTCCGACAAGTTTCGGTGGGTTTACGCGGCTTGAGACGCTGAATTTGGTTGATAATCTTTTGGATGGAACTATTCCGGGGAGTTTGGGTAACATTTCGAGTTTGAAAGAGCTTCAACTCGCTTACAATCCGTTTACGCGGAGTGAGATACCGAGTGCATTCGGGAACTTGACGAAGCTGGAGGTTCTCTGGCTTGCTAACTGTAATCTTGCCGGTCAGATTCCGGCAACCGTTGGCCGGATGACTCGGCTTAAGAATCTTGACTTGTCCAATAATAGACTCAGTGGGTCGATTCCGGTTTCACTCACTCAAATGAAAAGTTTAGTTCAAATTGAACTGTTTAACAACTCCCTCTCCGGGGAGTTGCCTTTGGGTCTGTCTAATTTAACTGCACTGCGACGAATTGATGTGTCGATGAATCACTTGACTGGAACAATTCCGGATGAACTGTGTGCATTACAGCTTGAGTCGCTAAATTTGTTCGAGAATCGATTGGAAGGGCCTTTGCCGGAGAGTATCGTTAATTCCCCTTACTTGAATGAGCTCAAATTGTTTAACAACAAGCTCAGTGGACAGTTACCGAGTAAACTCGGCCAAAACTCGCCATTAGTGTATCTTGATGTTTCATACAACGGGTTTTCTGGCGGAATCCCTGAAAACTTGTGTGCAAAAGGGACATTGGAAGAGCTTATATTGATTTACAATTCGTTTTCCGGAAGAATCCCGGCAAGTCTTGGAAAATGCACGAGCTTAAGCCGGATTCGAATGAGGAACAACAGACTCTCGGGTGCGGTTCCTGATGAATTTTGGGGTCTGCCCAATGTGTATTTGCTTGAGCTCGTTGAGAATTCTCTTTCTGGGTCTATTTCTTCGATGATATCTAGCGCTAAAAATCTCTCAATTTTGATGATCTCAGAAAATCAATTTTCAGGGTCAATTCCTTCCGAGATTGGGTCGTTAAGCAATCTGACTGAACTTTCAGGTAATGACAATATGTTTTCCGGTCGAATCCCGGAAACTTTGGTGAAGTTAAGCCTGTTGAGTACACTCGATCTAAGCGAGAACAAACTTTCTGGTGAATTGCCAATGGGAATTGGAGCTTTGAAAAGGCTAAACGAGTTAAATTTAGCAAACAACAGGCTATCTGGCAATATCCCGAGTGAAATTGGAAGCCTACCTGTGCTTAATTATCTCGATCTTTCAAGTAACCATCTCAGTGGAAGTATACCTCTTGAATTGCAGAATTTGAAACTGAATTCTCTAAATCTGTCGAACAATCGGTTATCAGGAGTACTTCCTCCTCTTTATGCAGAGGATATTTACAGAGATAGCTTTCTGGGTAATCCAGGTTTGTGCAAGAACGACCCAAGTCTTTGTCCTCACGTTGGAAAAGGCAAAAACCAAGGGTATTGGCTTCTCAGATCCATTTTTCTACTTGCTATCATTGTTTTTGTTGTTGGGGTCATTTGGTTTTTCTTTAAGTACAAGGAGTCCAAGAAGAGTGAGAAAGGAATTGCCATGTCCAAGTGGAGATCGTTTCATAAACTTGGTTTTAGTGAATATGAAATAGCAGACTGCCTCAGTGAAGACAAAGTCATTGGAAGTGGAGCATCCGGCAAAGTGTACAAAGTTGTGCTAAAAAATGGCGAGGTCGTGGCGGTGAAGAAGCTATGGCAAGGAGCAAGAAAAGAGGACACAAGTTTGGATTCAGAGAAAGATGGATTTGAGGCTGAAGTTGAGACTTTAGGGAAGATCCGTCACAAGAATATTGTAAGGTTATGGTGTTGCTGCAACACAGGCAACTGCAAGCTGCTTGTTTATGAGTACATGCCTAATGGAAGCTTAGGAGATTTGTTGCACGGCAGCAAAAAGCGCTTTCTGGATTGGCCTACAAGGTTTAAAGTAGCTTTGGATGCAGCTGAAGGGCTTTCTTACTTGCATCACGATTGTGCTCCTCCAATTGTTCATAGGGATATTAAATCCAACAATATATTGCTTGATTCTGAGTTTGGAGCTAGAGTTGCTGACTTTGGATTGGCCAAGTTTTTGAATGCTGGAAAGGGATCAGAATCTATGTCTGTCATTGCTGGTTCTTGTGGTTATATTGCACCAGAATATGCTTATACTTTAAGAGTAAATGAAAAGAGTGATATCTACAGCTTTGGGGTGGTAATTTTAGAGCTAGTGACAGGGCGGCCTCCAAATGATCCAGAATTTGGAGATAAAGACTTGGCAAAGTGGGTCTACGCCACCGTCGATGGCAGAGGACTCGATCAAGTGATTGATCCGAAACTCGGTTCGGAATACAAGGAAGAAATATACAAAGTCCTTGGCGTGGGAATGCTTTGCACAAGCTCACTCCCCATCAACCGCCCCTCAATGAGACAAGTCGTTAAACTGCTGCAGGAGGATGCCACAGAAACCAGACCATCCACCATTGTTAAAAAGGAAGCCAAACTTTCTCCATATTTCTCCTAG 2934 43.66 MPSVLLLLLLLLLSSPLVSSLNQEGLYLQRVKLGLSDPTHSLSSWNPRDDTPCNWSGVTCDSVTRSVIAVDLSDFQLAGPFPTFICRLPSLSSLSLSNNVINASLPDDVASCSSLQWLNLSQNLLAGSIPDAISKISNLRSLDLSGNNFSGEIPTSFGGFTRLETLNLVDNLLDGTIPGSLGNISSLKELQLAYNPFTRSEIPSAFGNLTKLEVLWLANCNLAGQIPATVGRMTRLKNLDLSNNRLSGSIPVSLTQMKSLVQIELFNNSLSGELPLGLSNLTALRRIDVSMNHLTGTIPDELCALQLESLNLFENRLEGPLPESIVNSPYLNELKLFNNKLSGQLPSKLGQNSPLVYLDVSYNGFSGGIPENLCAKGTLEELILIYNSFSGRIPASLGKCTSLSRIRMRNNRLSGAVPDEFWGLPNVYLLELVENSLSGSISSMISSAKNLSILMISENQFSGSIPSEIGSLSNLTELSGNDNMFSGRIPETLVKLSLLSTLDLSENKLSGELPMGIGALKRLNELNLANNRLSGNIPSEIGSLPVLNYLDLSSNHLSGSIPLELQNLKLNSLNLSNNRLSGVLPPLYAEDIYRDSFLGNPGLCKNDPSLCPHVGKGKNQGYWLLRSIFLLAIIVFVVGVIWFFFKYKESKKSEKGIAMSKWRSFHKLGFSEYEIADCLSEDKVIGSGASGKVYKVVLKNGEVVAVKKLWQGARKEDTSLDSEKDGFEAEVETLGKIRHKNIVRLWCCCNTGNCKLLVYEYMPNGSLGDLLHGSKKRFLDWPTRFKVALDAAEGLSYLHHDCAPPIVHRDIKSNNILLDSEFGARVADFGLAKFLNAGKGSESMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRPPNDPEFGDKDLAKWVYATVDGRGLDQVIDPKLGSEYKEEIYKVLGVGMLCTSSLPINRPSMRQVVKLLQEDATETRPSTIVKKEAKLSPYFS 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22525235 22528863 + Lsi11G013980.1 Lsi11g01398 674565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01398 977 ProSiteProfiles Protein kinase domain profile. 679 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01398 977 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 5 972 - -
Lsi11g01398 977 Pfam Protein kinase domain 681 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01398 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672|GO:0006468
Lsi11g01398 977 SMART LRR_typ_2 88 112 IPR003591 -
Lsi11g01398 977 SMART LRR_typ_2 496 520 IPR003591 -
Lsi11g01398 977 SMART LRR_typ_2 544 567 IPR003591 -
Lsi11g01398 977 SMART LRR_typ_2 136 159 IPR003591 -
Lsi11g01398 977 SMART LRR_typ_2 281 305 IPR003591 -
Lsi11g01398 977 SMART LRR_typ_2 233 257 IPR003591 -
Lsi11g01398 977 SMART LRR_typ_2 184 208 IPR003591 -
Lsi11g01398 977 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 972 - -
Lsi11g01398 977 Gene3D Ribonuclease Inhibitor 21 175 IPR032675 -
Lsi11g01398 977 Gene3D Ribonuclease Inhibitor 176 276 IPR032675 -
Lsi11g01398 977 Gene3D Phosphorylase Kinase; domain 1 661 761 - -
Lsi11g01398 977 SUPERFAMILY L domain-like 305 601 - -
Lsi11g01398 977 SMART serkin_6 679 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01398 977 Gene3D Transferase(Phosphotransferase) domain 1 762 972 - -
Lsi11g01398 977 Pfam Leucine rich repeat 137 196 IPR001611 GO:0005515
Lsi11g01398 977 SUPERFAMILY L domain-like 36 370 - -
Lsi11g01398 977 ProSitePatterns Protein kinases ATP-binding region signature. 685 708 IPR017441 GO:0005524
Lsi11g01398 977 Gene3D Ribonuclease Inhibitor 277 614 IPR032675 -
Lsi11g01398 977 PRINTS Leucine-rich repeat signature 496 509 - -
Lsi11g01398 977 PRINTS Leucine-rich repeat signature 236 249 - -
Lsi11g01398 977 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Lsi11g01398 977 SUPERFAMILY Protein kinase-like (PK-like) 672 953 IPR011009 -
Lsi11g01398 977 ProSiteProfiles Leucine-rich repeat profile. 235 257 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00288 Lsi-Chr1:2547424 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi01g00847 Lsi-Chr1:6791970 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi03g00641 Lsi-Chr3:7993942 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi04g02307 Lsi-Chr4:30266100 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi05g00804 Lsi-Chr5:11931475 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi06g00220 Lsi-Chr6:2498893 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi08g01054 Lsi-Chr8:19156987 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi08g01069 Lsi-Chr8:19264364 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi11g01398 Lsi-Chr11:22525235 Lsi02g00781 Lsi-Chr2:7205457 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84050 PF00069 Pkinase 1.30E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01398 - - csv:101208240 1717.98