Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01421 ATGGCACAATTGCCGCCCAAAATCCCAAATGTGACGCCTAATTGGCCGGAATTTTCTCGGCAGAAAATCCCTTCAATGGAAACCTTTGCACCGGCCACTACCACCACGGCGGCGGCGGTTACTCAACAGAATCCTTCTTGGGTCGATGAATTTCTCGATTTTTCTTCTGCTAGACGTGGATCCCACCGCCGCTCTGTTAGTGATTCCATCACATTCCTCGAAATGCCAATGCTGGAGGACGATTGTCGAGCCTCCGCTGCACCGCCGCCGCCGCCGCCGCCGGGATCCGGTGACCGGAATGAATTTGATAGATTCGATGACGAGCAATTCCTGTCGATGTTTAATGATGAAATCTCCGCCGCCGTCGCTCCCACCTTTTCGTCGTCGAACCCCTCCACGCCGTCCGATCATAACAGTATTAACGACGAGAAAGACGCTCAAAACGACGGTAAGCAAAATCAGAACAAAAACGAATCCGACGAAGTACAGAGCCAACAGCAATCGGAAAATCAAACACAATCCAATTCCACGGCGACGGCGGCTTCCACTGATCGGATAACCGACCCCAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCACAAAGATCACGAGTAAGGAAGCTTCAATACATATCAGAACTCGAACGAAGCGTTACATCGTTACAGGCTGAAGTATCGGTGCTGTCGCCGCGAGTGGCGTTTTTGGACCACCAGAGATTGCTTCTTAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCATTAAAAAGGGAGATAGAGAGACTAAGGCAAGTATATCATCAACAAAACATGAAGAAGATGGAAAATAATGCAGCACCGTCACCGGCGACGATTACTCCGTCCCAACCCGTCACCACCATCGCCATGGATGTCAAACATCCTAACGTAGATCAAAACGAGCAAGTTCCGAACGTCGTCGTTTAG 996 49.6 MAQLPPKIPNVTPNWPEFSRQKIPSMETFAPATTTTAAAVTQQNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEDDCRASAAPPPPPPPGSGDRNEFDRFDDEQFLSMFNDEISAAVAPTFSSSNPSTPSDHNSINDEKDAQNDGKQNQNKNESDEVQSQQQSENQTQSNSTATAASTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNMKKMENNAAPSPATITPSQPVTTIAMDVKHPNVDQNEQVPNVVV 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22748437 22752452 + Lsi11G014210.1 Lsi11g01421 674588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01421 331 Gene3D - 189 262 - -
Lsi11g01421 331 CDD bZIP_plant_RF2 191 241 IPR044759 GO:0003700|GO:0006355
Lsi11g01421 331 MobiDBLite consensus disorder prediction 157 184 - -
Lsi11g01421 331 PANTHER BASIC LEUCINE ZIPPER 34 1 300 - -
Lsi11g01421 331 MobiDBLite consensus disorder prediction 77 200 - -
Lsi11g01421 331 MobiDBLite consensus disorder prediction 138 156 - -
Lsi11g01421 331 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 193 208 IPR004827 GO:0003700|GO:0006355
Lsi11g01421 331 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 300 - -
Lsi11g01421 331 SMART brlzneu 186 250 IPR004827 GO:0003700|GO:0006355
Lsi11g01421 331 Pfam bZIP transcription factor 190 234 IPR004827 GO:0003700|GO:0006355
Lsi11g01421 331 Coils Coil 269 289 - -
Lsi11g01421 331 MobiDBLite consensus disorder prediction 121 137 - -
Lsi11g01421 331 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 240 IPR004827 GO:0003700|GO:0006355
Lsi11g01421 331 SUPERFAMILY Leucine zipper domain 190 244 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01151 Lsi-Chr11:20041618 Lsi11g01421 Lsi-Chr11:22748437 9.69E-21 dispersed
Lsi02g02018 Lsi-Chr2:26179653 Lsi11g01421 Lsi-Chr11:22748437 1.27E-15 transposed
Lsi04g00167 Lsi-Chr4:1833786 Lsi11g01421 Lsi-Chr11:22748437 2.80E-12 transposed
Lsi04g00706 Lsi-Chr4:6458314 Lsi11g01421 Lsi-Chr11:22748437 2.25E-26 transposed
Lsi04g01023 Lsi-Chr4:11638252 Lsi11g01421 Lsi-Chr11:22748437 4.74E-18 transposed
Lsi04g02035 Lsi-Chr4:27466069 Lsi11g01421 Lsi-Chr11:22748437 2.69E-111 transposed
Lsi05g00156 Lsi-Chr5:2281823 Lsi11g01421 Lsi-Chr11:22748437 2.50E-27 transposed
Lsi08g00550 Lsi-Chr8:13658514 Lsi11g01421 Lsi-Chr11:22748437 7.54E-09 transposed
Lsi10g01446 Lsi-Chr10:18546681 Lsi11g01421 Lsi-Chr11:22748437 1.60E-23 transposed
Lsi10g01485 Lsi-Chr10:18966125 Lsi11g01421 Lsi-Chr11:22748437 1.11E-21 transposed
Lsi10g00096 Lsi-Chr10:1539700 Lsi11g01421 Lsi-Chr11:22748437 1.36E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26207 PF00170 bZIP_1 3.90E-09 CL0018 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01421 - - csv:101205276 526.168