Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01421 ATGGCACAATTGCCGCCCAAAATCCCAAATGTGACGCCTAATTGGCCGGAATTTTCTCGGCAGAAAATCCCTTCAATGGAAACCTTTGCACCGGCCACTACCACCACGGCGGCGGCGGTTACTCAACAGAATCCTTCTTGGGTCGATGAATTTCTCGATTTTTCTTCTGCTAGACGTGGATCCCACCGCCGCTCTGTTAGTGATTCCATCACATTCCTCGAAATGCCAATGCTGGAGGACGATTGTCGAGCCTCCGCTGCACCGCCGCCGCCGCCGCCGCCGGGATCCGGTGACCGGAATGAATTTGATAGATTCGATGACGAGCAATTCCTGTCGATGTTTAATGATGAAATCTCCGCCGCCGTCGCTCCCACCTTTTCGTCGTCGAACCCCTCCACGCCGTCCGATCATAACAGTATTAACGACGAGAAAGACGCTCAAAACGACGGTAAGCAAAATCAGAACAAAAACGAATCCGACGAAGTACAGAGCCAACAGCAATCGGAAAATCAAACACAATCCAATTCCACGGCGACGGCGGCTTCCACTGATCGGATAACCGACCCCAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCACAAAGATCACGAGTAAGGAAGCTTCAATACATATCAGAACTCGAACGAAGCGTTACATCGTTACAGGCTGAAGTATCGGTGCTGTCGCCGCGAGTGGCGTTTTTGGACCACCAGAGATTGCTTCTTAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCATTAAAAAGGGAGATAGAGAGACTAAGGCAAGTATATCATCAACAAAACATGAAGAAGATGGAAAATAATGCAGCACCGTCACCGGCGACGATTACTCCGTCCCAACCCGTCACCACCATCGCCATGGATGTCAAACATCCTAACGTAGATCAAAACGAGCAAGTTCCGAACGTCGTCGTTTAG 996 49.6 MAQLPPKIPNVTPNWPEFSRQKIPSMETFAPATTTTAAAVTQQNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEDDCRASAAPPPPPPPGSGDRNEFDRFDDEQFLSMFNDEISAAVAPTFSSSNPSTPSDHNSINDEKDAQNDGKQNQNKNESDEVQSQQQSENQTQSNSTATAASTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNMKKMENNAAPSPATITPSQPVTTIAMDVKHPNVDQNEQVPNVVV 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22748437 22752452 + Lsi11G014210.1 Lsi11g01421 674588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01421 331 Gene3D - 189 262 - -
Lsi11g01421 331 CDD bZIP_plant_RF2 191 241 IPR044759 GO:0003700|GO:0006355
Lsi11g01421 331 MobiDBLite consensus disorder prediction 157 184 - -
Lsi11g01421 331 PANTHER BASIC LEUCINE ZIPPER 34 1 300 - -
Lsi11g01421 331 MobiDBLite consensus disorder prediction 77 200 - -
Lsi11g01421 331 MobiDBLite consensus disorder prediction 138 156 - -
Lsi11g01421 331 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 193 208 IPR004827 GO:0003700|GO:0006355
Lsi11g01421 331 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 300 - -
Lsi11g01421 331 SMART brlzneu 186 250 IPR004827 GO:0003700|GO:0006355
Lsi11g01421 331 Pfam bZIP transcription factor 190 234 IPR004827 GO:0003700|GO:0006355
Lsi11g01421 331 Coils Coil 269 289 - -
Lsi11g01421 331 MobiDBLite consensus disorder prediction 121 137 - -
Lsi11g01421 331 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 240 IPR004827 GO:0003700|GO:0006355
Lsi11g01421 331 SUPERFAMILY Leucine zipper domain 190 244 IPR046347 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01421 - - - csv:101205276 526.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01151 Lsi-Chr11:20041618 Lsi11g01421 Lsi-Chr11:22748437 9.69E-21 dispersed
Lsi02g02018 Lsi-Chr2:26179653 Lsi11g01421 Lsi-Chr11:22748437 1.27E-15 transposed
Lsi04g00167 Lsi-Chr4:1833786 Lsi11g01421 Lsi-Chr11:22748437 2.80E-12 transposed
Lsi04g00706 Lsi-Chr4:6458314 Lsi11g01421 Lsi-Chr11:22748437 2.25E-26 transposed
Lsi04g01023 Lsi-Chr4:11638252 Lsi11g01421 Lsi-Chr11:22748437 4.74E-18 transposed
Lsi04g02035 Lsi-Chr4:27466069 Lsi11g01421 Lsi-Chr11:22748437 2.69E-111 transposed
Lsi05g00156 Lsi-Chr5:2281823 Lsi11g01421 Lsi-Chr11:22748437 2.50E-27 transposed
Lsi08g00550 Lsi-Chr8:13658514 Lsi11g01421 Lsi-Chr11:22748437 7.54E-09 transposed
Lsi10g01446 Lsi-Chr10:18546681 Lsi11g01421 Lsi-Chr11:22748437 1.60E-23 transposed
Lsi10g01485 Lsi-Chr10:18966125 Lsi11g01421 Lsi-Chr11:22748437 1.11E-21 transposed
Lsi10g00096 Lsi-Chr10:1539700 Lsi11g01421 Lsi-Chr11:22748437 1.36E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g210 . . . . . . . . Cmo11g01879 Cmo19g00926 . Cma20g00588 . Car20g00552 Sed01g0510 Cpe15g00729 Cpe04g00711 Bhi05g01374 Tan02g0389 Cmetu11g1602 Lac12g0542 Hepe02g0250 . . Cla02g00218 Cam02g0235 Cec02g0232 Cco02g0233 Clacu02g0228 Cmu02g0225 Cre02g0556 . . Cone8ag1416 Cone12ag1360 . Csa07g00329 Chy11g00653 Cme01g00456 . . Bda14g00770 Bda15g00966 . . . . . . Cmo20g00648 Cma11g01804 . Car11g01492 . Cpe16g00416 . Bhi10g01378 . . . . . . . . . . . . . Lsi11g01421 . Chy01g00455 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi07g01159 . 1 219 bZIP Transcription Factor Family AT2G35530 61.4 2.8e-58 223.0
Lsi04g01023 . 10 359 bZIP Transcription Factor Family AT2G40620 54.7 4.0e-80 295.4
Lsi11g01151 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.4e-38 155.2
Lsi10g00496 CCT 1 233 bZIP Transcription Factor Family AT4G35040 63.0 1.5e-65 246.5
Lsi11g01199 CCT 1 232 bZIP Transcription Factor Family AT4G35040 63.4 1.9e-60 229.6
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT5G06950 78.1 1.8e-132 469.2
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT5G06950 76.4 8.9e-132 466.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT5G06950 69.6 9.6e-118 420.2
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT5G06950 67.7 9.6e-110 393.7
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT5G06950 60.8 6.9e-92 334.3
Lsi03g00453 . 100 334 bZIP Transcription Factor Family AT5G06950 51.8 9.5e-57 217.6
Lsi08g00928 . 642 935 bZIP Transcription Factor Family AT1G08320 61.0 1.6e-97 353.2
Lsi03g01716 . 198 514 bZIP Transcription Factor Family AT1G08320 59.0 1.5e-95 346.7
Lsi04g00016 . 97 384 bZIP Transcription Factor Family AT1G08320 60.1 3.4e-92 335.5
Lsi08g00395 . 177 467 bZIP Transcription Factor Family AT1G08320 59.1 3.1e-90 328.9
Lsi03g01615 . 178 470 bZIP Transcription Factor Family AT1G08320 55.3 1.4e-82 303.5
Lsi03g00118 . 165 349 bZIP Transcription Factor Family AT1G08320 52.9 9.9e-68 254.2
Lsi10g01166 . 123 325 bZIP Transcription Factor Family AT1G08320 57.1 1.9e-63 240.0
Lsi10g00496 CCT 1 267 bZIP Transcription Factor Family AT2G16770 59.7 4.5e-67 251.5
Lsi11g01199 CCT 1 263 bZIP Transcription Factor Family AT2G16770 57.6 4.3e-62 235.0
Lsi08g00928 . 637 935 bZIP Transcription Factor Family AT5G06960 79.0 1.2e-122 436.4
Lsi04g00016 . 74 384 bZIP Transcription Factor Family AT5G06960 74.3 1.4e-118 422.9
Lsi08g00395 . 162 467 bZIP Transcription Factor Family AT5G06960 67.6 1.8e-105 379.4
Lsi03g01615 . 156 470 bZIP Transcription Factor Family AT5G06960 64.4 2.3e-97 352.4
Lsi03g01716 . 207 514 bZIP Transcription Factor Family AT5G06960 60.1 3.6e-90 328.6
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT5G06960 50.8 9.5e-59 224.2
Lsi11g01151 . 1 517 bZIP Transcription Factor Family AT4G38900 59.1 3.3e-131 465.7
Lsi11g01149 . 1 536 bZIP Transcription Factor Family AT4G38900 56.4 1.4e-126 450.3
Lsi11g01151 . 64 545 bZIP Transcription Factor Family AT2G21230 53.0 7.0e-99 358.2
Lsi11g01421 . 1 248 bZIP Transcription Factor Family AT2G42380 57.1 3.5e-57 218.8
Lsi08g01479 CCT,ECH 6 353 bZIP Transcription Factor Family AT1G45249 53.8 7.3e-83 304.7
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT3G12250 78.8 1.2e-133 473.0
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT3G12250 75.8 2.9e-130 461.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT3G12250 68.7 1.1e-116 416.8
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT3G12250 68.4 6.7e-111 397.5
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT3G12250 60.1 7.7e-91 330.9
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT3G12250 50.4 6.5e-58 221.5
Lsi08g00395 . 16 467 bZIP Transcription Factor Family AT1G68640 62.3 4.1e-143 505.0
Lsi08g00928 . 606 935 bZIP Transcription Factor Family AT1G68640 64.2 2.2e-112 402.9
Lsi04g00016 . 51 384 bZIP Transcription Factor Family AT1G68640 64.4 3.5e-110 395.6
Lsi03g01615 . 135 470 bZIP Transcription Factor Family AT1G68640 60.5 1.5e-100 363.6
Lsi03g01716 . 209 514 bZIP Transcription Factor Family AT1G68640 55.5 7.0e-87 318.2
Lsi08g00550 . 8 341 bZIP Transcription Factor Family AT1G43700 50.7 1.4e-58 223.8
Lsi05g02094 . 11 416 bZIP Transcription Factor Family AT2G46270 50.6 1.6e-81 300.1
Lsi05g01348 . 42 373 bZIP Transcription Factor Family AT2G31370 70.0 4.4e-109 391.7
Lsi05g01346 . 1 359 bZIP Transcription Factor Family AT2G31370 62.4 2.1e-103 372.9
Lsi04g02035 . 1 250 bZIP Transcription Factor Family AT3G58120 51.6 4.8e-41 165.2
Lsi08g00619 . 17 321 bZIP Transcription Factor Family AT3G56850 56.8 1.2e-71 266.9
Lsi07g01159 . 37 219 bZIP Transcription Factor Family AT1G32150 61.7 7.2e-56 214.9
Lsi05g01348 . 10 368 bZIP Transcription Factor Family AT1G06070 68.5 7.7e-120 427.6
Lsi05g01346 . 1 357 bZIP Transcription Factor Family AT1G06070 68.2 7.7e-120 427.6
Lsi08g00550 . 145 342 bZIP Transcription Factor Family AT1G06070 54.9 3.3e-38 156.4
Lsi11g01151 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 9.6e-38 154.8
Lsi08g01479 CCT,ECH 6 353 bZIP Transcription Factor Family AT1G45249 53.8 7.3e-83 304.7
Lsi07g01159 . 1 219 bZIP Transcription Factor Family AT2G35530 61.4 2.8e-58 223.0
Lsi04g01023 . 10 359 bZIP Transcription Factor Family AT2G40620 54.7 4.0e-80 295.4
Lsi11g01151 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.4e-38 155.2
Lsi10g00496 CCT 1 233 bZIP Transcription Factor Family AT4G35040 63.0 1.5e-65 246.5
Lsi11g01199 CCT 1 232 bZIP Transcription Factor Family AT4G35040 63.4 1.9e-60 229.6
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT5G06950 78.1 1.8e-132 469.2
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT5G06950 76.4 8.9e-132 466.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT5G06950 69.6 9.6e-118 420.2
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT5G06950 67.7 9.6e-110 393.7
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT5G06950 60.8 6.9e-92 334.3
Lsi03g00453 . 100 334 bZIP Transcription Factor Family AT5G06950 51.8 9.5e-57 217.6
Lsi08g00928 . 642 935 bZIP Transcription Factor Family AT1G08320 61.0 1.6e-97 353.2
Lsi03g01716 . 198 514 bZIP Transcription Factor Family AT1G08320 59.0 1.5e-95 346.7
Lsi04g00016 . 97 384 bZIP Transcription Factor Family AT1G08320 60.1 3.4e-92 335.5
Lsi08g00395 . 177 467 bZIP Transcription Factor Family AT1G08320 59.1 3.1e-90 328.9
Lsi03g01615 . 178 470 bZIP Transcription Factor Family AT1G08320 55.3 1.4e-82 303.5
Lsi03g00118 . 165 349 bZIP Transcription Factor Family AT1G08320 52.9 9.9e-68 254.2
Lsi10g01166 . 123 325 bZIP Transcription Factor Family AT1G08320 57.1 1.9e-63 240.0
Lsi10g00496 CCT 1 267 bZIP Transcription Factor Family AT2G16770 59.7 4.5e-67 251.5
Lsi11g01199 CCT 1 263 bZIP Transcription Factor Family AT2G16770 57.6 4.3e-62 235.0
Lsi08g00928 . 637 935 bZIP Transcription Factor Family AT5G06960 79.0 1.2e-122 436.4
Lsi04g00016 . 74 384 bZIP Transcription Factor Family AT5G06960 74.3 1.4e-118 422.9
Lsi08g00395 . 162 467 bZIP Transcription Factor Family AT5G06960 67.6 1.8e-105 379.4
Lsi03g01615 . 156 470 bZIP Transcription Factor Family AT5G06960 64.4 2.3e-97 352.4
Lsi03g01716 . 207 514 bZIP Transcription Factor Family AT5G06960 60.1 3.6e-90 328.6
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT5G06960 50.8 9.5e-59 224.2
Lsi11g01151 . 1 517 bZIP Transcription Factor Family AT4G38900 59.1 3.3e-131 465.7
Lsi11g01149 . 1 536 bZIP Transcription Factor Family AT4G38900 56.4 1.4e-126 450.3
Lsi11g01151 . 64 545 bZIP Transcription Factor Family AT2G21230 53.0 7.0e-99 358.2
Lsi11g01421 . 1 248 bZIP Transcription Factor Family AT2G42380 57.1 3.5e-57 218.8
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT3G12250 78.8 1.2e-133 473.0
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT3G12250 75.8 2.9e-130 461.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT3G12250 68.7 1.1e-116 416.8
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT3G12250 68.4 6.7e-111 397.5
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT3G12250 60.1 7.7e-91 330.9
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT3G12250 50.4 6.5e-58 221.5
Lsi08g00395 . 16 467 bZIP Transcription Factor Family AT1G68640 62.3 4.1e-143 505.0
Lsi08g00928 . 606 935 bZIP Transcription Factor Family AT1G68640 64.2 2.2e-112 402.9
Lsi04g00016 . 51 384 bZIP Transcription Factor Family AT1G68640 64.4 3.5e-110 395.6
Lsi03g01615 . 135 470 bZIP Transcription Factor Family AT1G68640 60.5 1.5e-100 363.6
Lsi03g01716 . 209 514 bZIP Transcription Factor Family AT1G68640 55.5 7.0e-87 318.2
Lsi08g00550 . 8 341 bZIP Transcription Factor Family AT1G43700 50.7 1.4e-58 223.8
Lsi05g02094 . 11 416 bZIP Transcription Factor Family AT2G46270 50.6 1.6e-81 300.1
Lsi05g01348 . 42 373 bZIP Transcription Factor Family AT2G31370 70.0 4.4e-109 391.7
Lsi05g01346 . 1 359 bZIP Transcription Factor Family AT2G31370 62.4 2.1e-103 372.9
Lsi04g02035 . 1 250 bZIP Transcription Factor Family AT3G58120 51.6 4.8e-41 165.2
Lsi08g00619 . 17 321 bZIP Transcription Factor Family AT3G56850 56.8 1.2e-71 266.9
Lsi07g01159 . 37 219 bZIP Transcription Factor Family AT1G32150 61.7 7.2e-56 214.9
Lsi05g01348 . 10 368 bZIP Transcription Factor Family AT1G06070 68.5 7.7e-120 427.6
Lsi05g01346 . 1 357 bZIP Transcription Factor Family AT1G06070 68.2 7.7e-120 427.6
Lsi08g00550 . 145 342 bZIP Transcription Factor Family AT1G06070 54.9 3.3e-38 156.4
Lsi11g01151 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 9.6e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000658 3 3 2 3 3 1 5 3 2 3 2 2 4 3 3 5 2 5 5 3 3 3 3 3 3 3 3 9 3 3 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26207 PF00170 bZIP_1 3.90E-09 CL0018 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01421 Lsi_Chr11 FPKM 2.333333 2.670848 1.280517 1.744241 2.88103 1.626016 1.468389 1.072507 0.627448 0.811402