Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01422 | ATGGAAAGAGGAGGATCCAGTAGTAGCAGCTGTTCTTTCATGGCTACTTGTAACAGCACCACCAACAATAATAATACTAACACTCCAATGATGATGATGATCAATACTAATAATAATCCTCAAACATTGGACAACAACAATAACAACAACAACAACAAGATGTTCTTGCCTTTGTCTTGGTCTTCTTCTTCCAACAATAATCCTCAAACTCAAAGGGTTTCTGCTTTTGTTCCTAACAATAATGATCTTCTTACCACTTCCACTTCCAAAGCTAAAATTATGGCTCATCCTCTCTTCCCTCGCCTCCTCGCTGCCTATGTCAACTGCCAAAAGGTGGGTGCGCCACCGGAAGTGGTGGCGAGGCTAGAGCAAGCGTGTGCGGTGGCGACGGGAAGCTGTAGGGCGGCGGGACGTGGGGATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAGCCTTTTAAAGAAGCAATGCTTTTCTTCTCAAGAATTGAGTCTCAGCTCAAAGCCCTAGCAGTTCCTTCTGATGGTTTTGAGTTGGTCGGGCAGAACGAGTGCTCGAAGGAGATTGAGGTTGATATGAACGAAAACTACATTGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGTCAACTTCTACGCAAATATAGCGGGTATCTTGGCAGCCTAAAACAAGAGTTTTTGAAGAAGAAGAAGAACGGAAAGTTGCCTAAAGAAGCTCGACAACAGTTGCTCGACTGGTGGAGTCGACACTACAAATGGCCATATCCCTCGGAGTCGCAAAAGGTGGCGTTGGCGGAGTCGACGGGGCTGGACTTGAAGCAGATCAATAATTGGTTTATTAATCAAAGAAAGCGCCATTGGAAGCCATCGGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCTATGGATTGTTCTTCCACTCTTTTCTGA | 1014 | 44.87 | MERGGSSSSSCSFMATCNSTTNNNNTNTPMMMMINTNNNPQTLDNNNNNNNNKMFLPLSWSSSSNNNPQTQRVSAFVPNNNDLLTTSTSKAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGRGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKALAVPSDGFELVGQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 22788484 | 22793121 | + | Lsi11G014220.1 | Lsi11g01422 | 674589 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01422 | 337 | Pfam | ELK domain | 219 | 240 | IPR005539 | GO:0003677 | |
Lsi11g01422 | 337 | ProSitePatterns | 'Homeobox' domain signature. | 277 | 300 | IPR017970 | GO:0000981|GO:0006355 | |
Lsi11g01422 | 337 | ProSiteProfiles | ELK domain profile. | 219 | 239 | IPR005539 | GO:0003677 | |
Lsi11g01422 | 337 | Pfam | KNOX1 domain | 90 | 127 | IPR005540 | GO:0003677|GO:0005634 | |
Lsi11g01422 | 337 | ProSiteProfiles | 'Homeobox' domain profile. | 239 | 302 | IPR001356 | GO:0003677 | |
Lsi11g01422 | 337 | SUPERFAMILY | Homeodomain-like | 241 | 316 | IPR009057 | - | |
Lsi11g01422 | 337 | CDD | homeodomain | 251 | 303 | IPR001356 | GO:0003677 | |
Lsi11g01422 | 337 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 3 | 328 | - | - | |
Lsi11g01422 | 337 | PANTHER | HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 | 3 | 328 | - | - | |
Lsi11g01422 | 337 | SMART | KNOX1_2 | 87 | 131 | IPR005540 | GO:0003677|GO:0005634 | |
Lsi11g01422 | 337 | SMART | ELK_2 | 219 | 240 | IPR005539 | GO:0003677 | |
Lsi11g01422 | 337 | SMART | KNOX2_2 | 134 | 185 | IPR005541 | GO:0003677|GO:0005634 | |
Lsi11g01422 | 337 | Gene3D | - | 244 | 306 | - | - | |
Lsi11g01422 | 337 | Pfam | KNOX2 domain | 139 | 183 | IPR005541 | GO:0003677|GO:0005634 | |
Lsi11g01422 | 337 | Pfam | Homeobox KN domain | 259 | 298 | IPR008422 | GO:0003677|GO:0006355 | |
Lsi11g01422 | 337 | SMART | HOX_1 | 241 | 306 | IPR001356 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi10g01597 | Lsi11g01422 | CCT | |
Lsi10g01597 | Lsi11g01422 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00565 | Lsi-Chr4:5168784 | Lsi11g01422 | Lsi-Chr11:22788484 | 8.57E-24 | dispersed | |
Lsi04g01445 | Lsi-Chr4:22203808 | Lsi11g01422 | Lsi-Chr11:22788484 | 1.07E-72 | dispersed | |
Lsi08g01229 | Lsi-Chr8:20736876 | Lsi11g01422 | Lsi-Chr11:22788484 | 9.91E-30 | dispersed | |
Lsi08g01559 | Lsi-Chr8:23652588 | Lsi11g01422 | Lsi-Chr11:22788484 | 9.44E-72 | dispersed | |
Lsi11g00638 | Lsi-Chr11:6717313 | Lsi11g01422 | Lsi-Chr11:22788484 | 8.75E-70 | dispersed | |
Lsi01g00456 | Lsi-Chr1:3790826 | Lsi11g01422 | Lsi-Chr11:22788484 | 1.84E-130 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26208 | PF03791 | KNOX2 | 5.50E-22 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01422 | - | - | csv:101205039 | 504.597 |