Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01422 ATGGAAAGAGGAGGATCCAGTAGTAGCAGCTGTTCTTTCATGGCTACTTGTAACAGCACCACCAACAATAATAATACTAACACTCCAATGATGATGATGATCAATACTAATAATAATCCTCAAACATTGGACAACAACAATAACAACAACAACAACAAGATGTTCTTGCCTTTGTCTTGGTCTTCTTCTTCCAACAATAATCCTCAAACTCAAAGGGTTTCTGCTTTTGTTCCTAACAATAATGATCTTCTTACCACTTCCACTTCCAAAGCTAAAATTATGGCTCATCCTCTCTTCCCTCGCCTCCTCGCTGCCTATGTCAACTGCCAAAAGGTGGGTGCGCCACCGGAAGTGGTGGCGAGGCTAGAGCAAGCGTGTGCGGTGGCGACGGGAAGCTGTAGGGCGGCGGGACGTGGGGATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAGCCTTTTAAAGAAGCAATGCTTTTCTTCTCAAGAATTGAGTCTCAGCTCAAAGCCCTAGCAGTTCCTTCTGATGGTTTTGAGTTGGTCGGGCAGAACGAGTGCTCGAAGGAGATTGAGGTTGATATGAACGAAAACTACATTGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGTCAACTTCTACGCAAATATAGCGGGTATCTTGGCAGCCTAAAACAAGAGTTTTTGAAGAAGAAGAAGAACGGAAAGTTGCCTAAAGAAGCTCGACAACAGTTGCTCGACTGGTGGAGTCGACACTACAAATGGCCATATCCCTCGGAGTCGCAAAAGGTGGCGTTGGCGGAGTCGACGGGGCTGGACTTGAAGCAGATCAATAATTGGTTTATTAATCAAAGAAAGCGCCATTGGAAGCCATCGGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCTATGGATTGTTCTTCCACTCTTTTCTGA 1014 44.87 MERGGSSSSSCSFMATCNSTTNNNNTNTPMMMMINTNNNPQTLDNNNNNNNNKMFLPLSWSSSSNNNPQTQRVSAFVPNNNDLLTTSTSKAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGRGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKALAVPSDGFELVGQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22788484 22793121 + Lsi11G014220.1 Lsi11g01422 674589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01422 337 Pfam ELK domain 219 240 IPR005539 GO:0003677
Lsi11g01422 337 ProSitePatterns 'Homeobox' domain signature. 277 300 IPR017970 GO:0000981|GO:0006355
Lsi11g01422 337 ProSiteProfiles ELK domain profile. 219 239 IPR005539 GO:0003677
Lsi11g01422 337 Pfam KNOX1 domain 90 127 IPR005540 GO:0003677|GO:0005634
Lsi11g01422 337 ProSiteProfiles 'Homeobox' domain profile. 239 302 IPR001356 GO:0003677
Lsi11g01422 337 SUPERFAMILY Homeodomain-like 241 316 IPR009057 -
Lsi11g01422 337 CDD homeodomain 251 303 IPR001356 GO:0003677
Lsi11g01422 337 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 328 - -
Lsi11g01422 337 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 3 328 - -
Lsi11g01422 337 SMART KNOX1_2 87 131 IPR005540 GO:0003677|GO:0005634
Lsi11g01422 337 SMART ELK_2 219 240 IPR005539 GO:0003677
Lsi11g01422 337 SMART KNOX2_2 134 185 IPR005541 GO:0003677|GO:0005634
Lsi11g01422 337 Gene3D - 244 306 - -
Lsi11g01422 337 Pfam KNOX2 domain 139 183 IPR005541 GO:0003677|GO:0005634
Lsi11g01422 337 Pfam Homeobox KN domain 259 298 IPR008422 GO:0003677|GO:0006355
Lsi11g01422 337 SMART HOX_1 241 306 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g01597 Lsi11g01422 CCT
Lsi10g01597 Lsi11g01422 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00565 Lsi-Chr4:5168784 Lsi11g01422 Lsi-Chr11:22788484 8.57E-24 dispersed
Lsi04g01445 Lsi-Chr4:22203808 Lsi11g01422 Lsi-Chr11:22788484 1.07E-72 dispersed
Lsi08g01229 Lsi-Chr8:20736876 Lsi11g01422 Lsi-Chr11:22788484 9.91E-30 dispersed
Lsi08g01559 Lsi-Chr8:23652588 Lsi11g01422 Lsi-Chr11:22788484 9.44E-72 dispersed
Lsi11g00638 Lsi-Chr11:6717313 Lsi11g01422 Lsi-Chr11:22788484 8.75E-70 dispersed
Lsi01g00456 Lsi-Chr1:3790826 Lsi11g01422 Lsi-Chr11:22788484 1.84E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26208 PF03791 KNOX2 5.50E-22 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01422 - - csv:101205039 504.597