Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01430 ATGAACGCTCGATTTGGGTTTTTGTTCTTGGTTTTGATCTCTGTTTTACTGGGAGCTGATTCAAAGTGCCCTAGAACATGCGATGTAGCTTTAGGTTCGTACTTCGTGTGGGAGGGTAGCACTTTATCTCTCATCTCTCAAATGTTTCGGTTGTCGTCTCCTGATATAATCGTCAGCTACAATAGAGATAAAATTCCCAACAAAGACAGTGTTAATAGCGGCATCAGAATCAACGTTCCATTCTCCTGTGACTGTATTAGCGATACGTTTCTGGGTCATACGTTTCAGTACCAGATTAATAGTGGAGATACTTACACTGAAATTGCGACCAAATTCTATTCGAACCTGACTACGGTGGACATGTTACAAAGATTCAATAATTTTGATGTTCTTAATCTTCCTCCAAATGGGATTTTGAATGTCGTAGTGAACTGCTCCTGTGGGAATCCTGATGTTTCCAAGACATATGGGCTGTTTGCCACTTACCCAATTCGATCCGATGATAGTTGGGATAAGTTGCGAACAGACACAAATGTCAGCTTGTCTTTGCTGCAGCAGTACAATCAGGGTGTGAATTTCAGCACAGGAAATTTGCTCTTTATTCCAGGCAGAGATCAAAGTGGCAACTATCCACCTCTGAATATAAGCACAGGTGCTGTGGCTTTCTTAGATGGAATTGAAATGATTATCTTGAGCTTGACGGAAGAAAACATGTCTGAGTTATTAGATTTGGAATGTGGAGCCATTGCAGGCATAATTATAGGCGCAGTACTTGGGGTTCTACTTGTAGCTGGCATCATTTACATTGTCATTCGAAGGAGGAAGTCGAAAAGTTCTAAATTGCTGGCGTTCTCCCAAGAACTGTCTTCTCAAGATGGACGCGCTCTCGCCCCTGGAAGTTCATTAGATAAATCTACTGAATCAAATGGTCAAGGTGGTGGTATAGCTGCCGTTACCGGTATTACTGTGGACAAATCAGTGGATTTCTCATATGAAGAACTTGCCAGGGCCACAGACAACTTTAGCTTGGCTAACAAAATTGGTGAAGGGGGTTTCGGATCGGTTTACTATGCAGAACTCAGAGGAGAGAAAGCTGCAATAAAGAAGATGGACATGCAAGCTTCAAGGGAGTTCCTTGCAGAAATTAAGGTTCTAACACGTGTTCACCACTTGAACCTGGTGCGCTTGATAGGATATTGTGTTGAGAATTCTCTATTCCTAGTCTATGAGTACATTGAGAATGGCAACTTAAGCCAACATTTACGAGGCACGGGTCGGGATCCATTGCCGTGGCCTTCTAGGGTCCAAATAGCCCTCGATTCAGCTCGAGGCCTTGAGTATATCCATGAGCACACTGTTCCCGTTTATATTCATCGTGATATTAAATCCGCCAACATATTGATTGACAAAAACTTTCATGGAAAGGTTGCAGATTTTGGGTTAACCAAGTTAACTGAAGTTGGAAATTCTTCGCTCCCTACTCGTCTTGTGGGCACATTTGGATATATGCCACCCGAATATGCGCAATACGGTGATGTTTCTCCAAAGATCGACGTATATGCTTTCGGTGTTGTTCTTTATGAGCTTATTTCAGCCAAGGAAGCTGTAGTCAAGACGAACAGAACCAGCGCAATCAATGAATCAAAAGGCCTTGTCGCTTTGTTTGAAGATGTCCTGAATCAACCCGACGCAAAAGAGAACCTTCACAAACTAGTCGACCCGAGACTCGAAGACAACTACCCTCTCGATTCGGTTTTCAAGATGGCTCAGCTTGCCAAGGCATGTACACATGAGAATCCACAGCTACGGCCAAGCATGAGATCCATTGTGGTTGCTCTCATGACACTTTCTTCTGCAACAGAGGATTGGGACGTCGGCTCTTTCTACGAAAACCAAGCTCTCGTCAACTTGATGTCGGGAAGGTAG 1926 43.46 MNARFGFLFLVLISVLLGADSKCPRTCDVALGSYFVWEGSTLSLISQMFRLSSPDIIVSYNRDKIPNKDSVNSGIRINVPFSCDCISDTFLGHTFQYQINSGDTYTEIATKFYSNLTTVDMLQRFNNFDVLNLPPNGILNVVVNCSCGNPDVSKTYGLFATYPIRSDDSWDKLRTDTNVSLSLLQQYNQGVNFSTGNLLFIPGRDQSGNYPPLNISTGAVAFLDGIEMIILSLTEENMSELLDLECGAIAGIIIGAVLGVLLVAGIIYIVIRRRKSKSSKLLAFSQELSSQDGRALAPGSSLDKSTESNGQGGGIAAVTGITVDKSVDFSYEELARATDNFSLANKIGEGGFGSVYYAELRGEKAAIKKMDMQASREFLAEIKVLTRVHHLNLVRLIGYCVENSLFLVYEYIENGNLSQHLRGTGRDPLPWPSRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGNSSLPTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAVVKTNRTSAINESKGLVALFEDVLNQPDAKENLHKLVDPRLEDNYPLDSVFKMAQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVNLMSGR 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22849358 22854780 + Lsi11G014300.1 Lsi11g01430 674597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01430 641 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 5 641 IPR044812 GO:0019199|GO:0045087
Lsi11g01430 641 Pfam LysM domain 97 135 IPR018392 -
Lsi11g01430 641 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Lsi11g01430 641 Pfam Protein kinase domain 343 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01430 641 CDD STKc_IRAK 347 610 - -
Lsi11g01430 641 Gene3D Phosphorylase Kinase; domain 1 327 411 - -
Lsi11g01430 641 SUPERFAMILY Protein kinase-like (PK-like) 325 613 IPR011009 -
Lsi11g01430 641 ProSiteProfiles Protein kinase domain profile. 341 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01430 641 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1 5 641 - -
Lsi11g01430 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Lsi11g01430 641 SMART serkin_6 341 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01430 641 Gene3D Transferase(Phosphotransferase) domain 1 412 632 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00526 Lsi-Chr7:5564512 Lsi11g01430 Lsi-Chr11:22849358 2.02E-93 dispersed
Lsi07g00825 Lsi-Chr7:9191165 Lsi11g01430 Lsi-Chr11:22849358 2.91E-08 dispersed
Lsi10g00578 Lsi-Chr10:8397537 Lsi11g01430 Lsi-Chr11:22849358 2.03E-60 dispersed
Lsi11g01430 Lsi-Chr11:22849358 Lsi06g00871 Lsi-Chr6:18218127 2.48E-72 dispersed
Lsi11g01430 Lsi-Chr11:22849358 Lsi11g00260 Lsi-Chr11:2621815 1.24E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84051 PF00069 Pkinase 3.70E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01430 - K13429 csv:101203576 1093.18