Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01439 | ATGGACGCCGCCGCACCTTCTCCTTCCCCTCCTCTGCCCACTCCCACTCCCCTGCAATTTCCGGTTAACCTCAATTCCACACTCCTTGATCCCCACGATTCTCCTCCTCCTCCGCCCCCTCCTCCCCCTCCGCCGCCCCCGCCTCCTCCACCCTCCTCCTCCCACCGCCCCTTCTTCGACGAAATGAACTTCTTCCCTGCCGATGATAAATCGCGTGTCCTTCTCTCTGCCTCTCACTCCAATCTCACTCCCACCAAACTCCACTTCAATGTTAACACGGGGTTGAATCTCTTGACGACAAATTCGTGTAGTGATCAATCCATAGTGGACGATGGAGTTTCACCAAACCCAGAAGAAAAAAGAATAAAAAACGAGAGAGGAGTTCTTCAAGCTGAATTGGAGAGGATAAATTCAGAGAATTTGCGATTAAAAGACATGTTAAATCAAGTGACGAGCAATTACCAAACACTGCAGATGCAATTCAACACGTTAATTCAAACCCAGAAAACAGGGGACGCCGGTGACTTGATTGAGGAAAACGCCGGCACCGGCGGAGGGAATAACAACAATAACAATAATATTAGTAGTAATAAGCTGGTGCCCAGGCAATTTATGGATCTTGGATTAGCAACAAATATGGAGAACGATGAGCCGTCGACATCGTCGGAAGGGAGGAGTGGGGAGCAGTCTCGGTCGCCGGGAACCACCGGAGAAGTAGCGTCGTCGAAACGGCATAGCCCAGATCAATCATCCAATTGGGGTTCCAATAATAATAACAACAACAACAATAATAATAATAAAGTTCCAAAATTCAGTTCTTCTTCGGGTAAAGATGTGGATCAAACTGAAGCTACCATGAGAAAGGCTAGAGTCTCCGTTCGAGCCAGATCAGAAGCACCCATGATAACAGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGCAAAGGGAAACCCTTGTCCACGAGCTTATTACCGGTGCACCATGGCCGCCGGCTGCCCTGTTAGAAAACAAGTACAAAGATGTGCTGAAGACAAAACAATTTTGATAACAACCTACGAAGGAAACCACAACCACCCATTGCCGCCAGCCGCCATGGCAATGGCTTCCACAACTTCATCGGCGGCCAGAATGCTTCTCTCAGGATCCATGTCAAGTGCTGATGGTTTAATGAACTCTAATTTTTTAGCAAGAACCCTACTGCCATGTTCTTCAAGCATGGCTACAATCTCAGCCTCAGCTCCATTTCCCACTGTCACATTGGATCTAACTCAAAACCCTAATCCTTTATTCCAACGCCCGGCTGCTGGTCACTTCCCGATCCCGTTTGCTGCCAGTCCGCCCCAAAGCTTCCCGCAGATCTTCGGACATGCATTATACAATCAATCAAAATTCTCCGGCCTCCAAATGTCAAAGGATATAGAAGCACCGCCGCCTCCACCGTCGCAAAATCCATTTGCCGATACGTTGAGTGCGGCGGGTGCAGCCATCGCGTCTGACCCGAATTTTATTGCTGCATTGGCGACGGCAATGACGTCGCTAATCCGCGGATCACATCATCAGAAAGAAAATGGTAGTGGCAATAGTACTGTTGATAACAATACAAGTAGCAACTCCCAACAGTAA | 1629 | 48.19 | MDAAAPSPSPPLPTPTPLQFPVNLNSTLLDPHDSPPPPPPPPPPPPPPPPPSSSHRPFFDEMNFFPADDKSRVLLSASHSNLTPTKLHFNVNTGLNLLTTNSCSDQSIVDDGVSPNPEEKRIKNERGVLQAELERINSENLRLKDMLNQVTSNYQTLQMQFNTLIQTQKTGDAGDLIEENAGTGGGNNNNNNNISSNKLVPRQFMDLGLATNMENDEPSTSSEGRSGEQSRSPGTTGEVASSKRHSPDQSSNWGSNNNNNNNNNNNKVPKFSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQNPNPLFQRPAAGHFPIPFAASPPQSFPQIFGHALYNQSKFSGLQMSKDIEAPPPPPSQNPFADTLSAAGAAIASDPNFIAALATAMTSLIRGSHHQKENGSGNSTVDNNTSSNSQQ | 542 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 22919194 | 22922384 | + | Lsi11G014390.1 | Lsi11g01439 | 674606 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01439 | 542 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Lsi11g01439 | 542 | SUPERFAMILY | WRKY DNA-binding domain | 295 | 363 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01439 | 542 | MobiDBLite | consensus disorder prediction | 212 | 296 | - | - | |
Lsi11g01439 | 542 | Pfam | WRKY DNA -binding domain | 304 | 361 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01439 | 542 | PANTHER | OS05G0567200 PROTEIN | 50 | 539 | - | - | |
Lsi11g01439 | 542 | MobiDBLite | consensus disorder prediction | 213 | 280 | - | - | |
Lsi11g01439 | 542 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Lsi11g01439 | 542 | MobiDBLite | consensus disorder prediction | 31 | 55 | - | - | |
Lsi11g01439 | 542 | SMART | WRKY_cls | 302 | 362 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01439 | 542 | MobiDBLite | consensus disorder prediction | 519 | 542 | - | - | |
Lsi11g01439 | 542 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 50 | 539 | IPR044810 | GO:0003700 | |
Lsi11g01439 | 542 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 40 | 46 | - | - | |
Lsi11g01439 | 542 | Coils | Coil | 119 | 153 | - | - | |
Lsi11g01439 | 542 | MobiDBLite | consensus disorder prediction | 182 | 197 | - | - | |
Lsi11g01439 | 542 | MobiDBLite | consensus disorder prediction | 175 | 197 | - | - | |
Lsi11g01439 | 542 | ProSiteProfiles | WRKY domain profile. | 297 | 363 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01439 | 542 | Gene3D | WRKY domain | 287 | 364 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00307 | Lsi-Chr2:2652442 | Lsi11g01439 | Lsi-Chr11:22919194 | 3.38E-51 | dispersed | |
Lsi06g01483 | Lsi-Chr6:25303697 | Lsi11g01439 | Lsi-Chr11:22919194 | 6.69E-51 | dispersed | |
Lsi11g01439 | Lsi-Chr11:22919194 | Lsi02g01215 | Lsi-Chr2:15697111 | 2.08E-13 | dispersed | |
Lsi05g00196 | Lsi-Chr5:2743592 | Lsi11g01439 | Lsi-Chr11:22919194 | 7.94E-41 | transposed | |
Lsi01g00447 | Lsi-Chr1:3726678 | Lsi11g01439 | Lsi-Chr11:22919194 | 4.15E-163 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26211 | PF03106 | WRKY | 2.50E-24 | CL0274 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01439 | - | - | csv:101205587 | 801.201 |