Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01439 ATGGACGCCGCCGCACCTTCTCCTTCCCCTCCTCTGCCCACTCCCACTCCCCTGCAATTTCCGGTTAACCTCAATTCCACACTCCTTGATCCCCACGATTCTCCTCCTCCTCCGCCCCCTCCTCCCCCTCCGCCGCCCCCGCCTCCTCCACCCTCCTCCTCCCACCGCCCCTTCTTCGACGAAATGAACTTCTTCCCTGCCGATGATAAATCGCGTGTCCTTCTCTCTGCCTCTCACTCCAATCTCACTCCCACCAAACTCCACTTCAATGTTAACACGGGGTTGAATCTCTTGACGACAAATTCGTGTAGTGATCAATCCATAGTGGACGATGGAGTTTCACCAAACCCAGAAGAAAAAAGAATAAAAAACGAGAGAGGAGTTCTTCAAGCTGAATTGGAGAGGATAAATTCAGAGAATTTGCGATTAAAAGACATGTTAAATCAAGTGACGAGCAATTACCAAACACTGCAGATGCAATTCAACACGTTAATTCAAACCCAGAAAACAGGGGACGCCGGTGACTTGATTGAGGAAAACGCCGGCACCGGCGGAGGGAATAACAACAATAACAATAATATTAGTAGTAATAAGCTGGTGCCCAGGCAATTTATGGATCTTGGATTAGCAACAAATATGGAGAACGATGAGCCGTCGACATCGTCGGAAGGGAGGAGTGGGGAGCAGTCTCGGTCGCCGGGAACCACCGGAGAAGTAGCGTCGTCGAAACGGCATAGCCCAGATCAATCATCCAATTGGGGTTCCAATAATAATAACAACAACAACAATAATAATAATAAAGTTCCAAAATTCAGTTCTTCTTCGGGTAAAGATGTGGATCAAACTGAAGCTACCATGAGAAAGGCTAGAGTCTCCGTTCGAGCCAGATCAGAAGCACCCATGATAACAGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGCAAAGGGAAACCCTTGTCCACGAGCTTATTACCGGTGCACCATGGCCGCCGGCTGCCCTGTTAGAAAACAAGTACAAAGATGTGCTGAAGACAAAACAATTTTGATAACAACCTACGAAGGAAACCACAACCACCCATTGCCGCCAGCCGCCATGGCAATGGCTTCCACAACTTCATCGGCGGCCAGAATGCTTCTCTCAGGATCCATGTCAAGTGCTGATGGTTTAATGAACTCTAATTTTTTAGCAAGAACCCTACTGCCATGTTCTTCAAGCATGGCTACAATCTCAGCCTCAGCTCCATTTCCCACTGTCACATTGGATCTAACTCAAAACCCTAATCCTTTATTCCAACGCCCGGCTGCTGGTCACTTCCCGATCCCGTTTGCTGCCAGTCCGCCCCAAAGCTTCCCGCAGATCTTCGGACATGCATTATACAATCAATCAAAATTCTCCGGCCTCCAAATGTCAAAGGATATAGAAGCACCGCCGCCTCCACCGTCGCAAAATCCATTTGCCGATACGTTGAGTGCGGCGGGTGCAGCCATCGCGTCTGACCCGAATTTTATTGCTGCATTGGCGACGGCAATGACGTCGCTAATCCGCGGATCACATCATCAGAAAGAAAATGGTAGTGGCAATAGTACTGTTGATAACAATACAAGTAGCAACTCCCAACAGTAA 1629 48.19 MDAAAPSPSPPLPTPTPLQFPVNLNSTLLDPHDSPPPPPPPPPPPPPPPPPSSSHRPFFDEMNFFPADDKSRVLLSASHSNLTPTKLHFNVNTGLNLLTTNSCSDQSIVDDGVSPNPEEKRIKNERGVLQAELERINSENLRLKDMLNQVTSNYQTLQMQFNTLIQTQKTGDAGDLIEENAGTGGGNNNNNNNISSNKLVPRQFMDLGLATNMENDEPSTSSEGRSGEQSRSPGTTGEVASSKRHSPDQSSNWGSNNNNNNNNNNNKVPKFSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQNPNPLFQRPAAGHFPIPFAASPPQSFPQIFGHALYNQSKFSGLQMSKDIEAPPPPPSQNPFADTLSAAGAAIASDPNFIAALATAMTSLIRGSHHQKENGSGNSTVDNNTSSNSQQ 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22919194 22922384 + Lsi11G014390.1 Lsi11g01439 674606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01439 542 MobiDBLite consensus disorder prediction 1 57 - -
Lsi11g01439 542 SUPERFAMILY WRKY DNA-binding domain 295 363 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi11g01439 542 MobiDBLite consensus disorder prediction 212 296 - -
Lsi11g01439 542 Pfam WRKY DNA -binding domain 304 361 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi11g01439 542 PANTHER OS05G0567200 PROTEIN 50 539 - -
Lsi11g01439 542 MobiDBLite consensus disorder prediction 213 280 - -
Lsi11g01439 542 MobiDBLite consensus disorder prediction 1 18 - -
Lsi11g01439 542 MobiDBLite consensus disorder prediction 31 55 - -
Lsi11g01439 542 SMART WRKY_cls 302 362 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi11g01439 542 MobiDBLite consensus disorder prediction 519 542 - -
Lsi11g01439 542 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 50 539 IPR044810 GO:0003700
Lsi11g01439 542 SUPERFAMILY Formin homology 2 domain (FH2 domain) 40 46 - -
Lsi11g01439 542 Coils Coil 119 153 - -
Lsi11g01439 542 MobiDBLite consensus disorder prediction 182 197 - -
Lsi11g01439 542 MobiDBLite consensus disorder prediction 175 197 - -
Lsi11g01439 542 ProSiteProfiles WRKY domain profile. 297 363 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi11g01439 542 Gene3D WRKY domain 287 364 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00307 Lsi-Chr2:2652442 Lsi11g01439 Lsi-Chr11:22919194 3.38E-51 dispersed
Lsi06g01483 Lsi-Chr6:25303697 Lsi11g01439 Lsi-Chr11:22919194 6.69E-51 dispersed
Lsi11g01439 Lsi-Chr11:22919194 Lsi02g01215 Lsi-Chr2:15697111 2.08E-13 dispersed
Lsi05g00196 Lsi-Chr5:2743592 Lsi11g01439 Lsi-Chr11:22919194 7.94E-41 transposed
Lsi01g00447 Lsi-Chr1:3726678 Lsi11g01439 Lsi-Chr11:22919194 4.15E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26211 PF03106 WRKY 2.50E-24 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01439 - - csv:101205587 801.201