Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01440 | ATGGCCTGGACCCGACGATCCGCCGTCGGCAACGGCTCCTCCGCCACCGTCTACCTCGCCTCCGCCGCCTCCTCCGGTGAGCTATTCGCCGTCAAGTCCGCCGACCTACTCAAATCAGACTTCTTGAAAACAGAGCAGAGGATTCTTTCTTCCCTGTCCCACCCTTCAATTGTGGGCTACAGGGGGTTCGATGTAACCAGAGAAAATGGGAAGCTAATGTACAATCTCTTCATGGAGTACGCCGCCGGTGGCTCTCTCACCGACGAAATCTTCCGGAGTGGTGGCTGGATTAAGGAGGCGGCGGCGGCGTTTTACACGCGTCAAATTGTTAGAGGATTAGAGTACTTGCACAAACAGGGTTTGGTGCATTGTGATATCAAAGCTAAGAATATTTTAATCGGTGGAGATGGTTTGAAGATTGCTGATTTCGGATGCTCCAAATGGGTCTGTGTGGCGGAGGCGACGATCGGCGGAACGCCGATGTTCATGGCACCGGAAGTGGCGCGTGGGGAAAAACAGGGGATTTCCTCTGACATTTGGGCACTTGGGTGTACTTTAATTGAAATGGTCACCGGCGCCCCACCATGGCCCATTTCCGGCGACCCTGTTTCGGTGCTGTACCGGATCGGATATTCCGGCGACTCACCGGAAATTCCGAGCTTTTTATCGAAGAAAGCGAAGGATTTTTTAAGGAAATGCTTGAGAAGTGACCCAACAGAACGATGGAGCGCAAGTCAACTTCTTGAACATCCATTTTTGGGGGAATTGAGTTCTGGGTTAGAGGAAATCAAGGAATTACATCCACATTCCGAATCCCCCACGAGTATTTTGGATCAAAGCCTCTGGAATTCGTTAGAAGAAGAATCAGAAACACTGTTGAAAACAGAGCAATGGGATGATGATGATGAAAGAATCAAACGGCTGGCGATGTTTTCAGGAGAAATTAAATGGGAATTGGGAGATGAGAATTGGATCACAATCAGAAGCAGTATGGATGGTGAAGATGAAGATGAATCCAAATTAGAAGAAAAGATTTAG | 1038 | 48.94 | MAWTRRSAVGNGSSATVYLASAASSGELFAVKSADLLKSDFLKTEQRILSSLSHPSIVGYRGFDVTRENGKLMYNLFMEYAAGGSLTDEIFRSGGWIKEAAAAFYTRQIVRGLEYLHKQGLVHCDIKAKNILIGGDGLKIADFGCSKWVCVAEATIGGTPMFMAPEVARGEKQGISSDIWALGCTLIEMVTGAPPWPISGDPVSVLYRIGYSGDSPEIPSFLSKKAKDFLRKCLRSDPTERWSASQLLEHPFLGELSSGLEEIKELHPHSESPTSILDQSLWNSLEEESETLLKTEQWDDDDERIKRLAMFSGEIKWELGDENWITIRSSMDGEDEDESKLEEKI | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 22938320 | 22939357 | + | Lsi11G014400.1 | Lsi11g01440 | 674607 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01440 | 345 | SMART | serkin_6 | 3 | 253 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01440 | 345 | PANTHER | MAP KINASE KINASE KINASE | 1 | 335 | - | - | |
Lsi11g01440 | 345 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 32 | IPR017441 | GO:0005524 | |
Lsi11g01440 | 345 | CDD | STKc_MAPKKK | 3 | 253 | - | - | |
Lsi11g01440 | 345 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 121 | 133 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi11g01440 | 345 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 317 | - | - | |
Lsi11g01440 | 345 | ProSiteProfiles | Protein kinase domain profile. | 3 | 253 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01440 | 345 | Pfam | Protein kinase domain | 5 | 253 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01440 | 345 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 1 | 335 | - | - | |
Lsi11g01440 | 345 | SUPERFAMILY | Protein kinase-like (PK-like) | 6 | 294 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01269 | Lsi-Chr2:16870314 | Lsi11g01440 | Lsi-Chr11:22938320 | 5.35E-64 | dispersed | |
Lsi02g01893 | Lsi-Chr2:24833368 | Lsi11g01440 | Lsi-Chr11:22938320 | 1.20E-100 | dispersed | |
Lsi11g00542 | Lsi-Chr11:5665789 | Lsi11g01440 | Lsi-Chr11:22938320 | 4.20E-53 | dispersed | |
Lsi11g01440 | Lsi-Chr11:22938320 | Lsi02g02474 | Lsi-Chr2:31238386 | 3.16E-49 | dispersed | |
Lsi01g00445 | Lsi-Chr1:3704520 | Lsi11g01440 | Lsi-Chr11:22938320 | 1.30E-113 | wgd | |
Lsi10g00114 | Lsi-Chr10:1804629 | Lsi11g01440 | Lsi-Chr11:22938320 | 1.13E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84052 | PF00069 | Pkinase | 6.40E-57 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01440 | K20716 | - | csv:101205351 | 592.423 |