Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01440 ATGGCCTGGACCCGACGATCCGCCGTCGGCAACGGCTCCTCCGCCACCGTCTACCTCGCCTCCGCCGCCTCCTCCGGTGAGCTATTCGCCGTCAAGTCCGCCGACCTACTCAAATCAGACTTCTTGAAAACAGAGCAGAGGATTCTTTCTTCCCTGTCCCACCCTTCAATTGTGGGCTACAGGGGGTTCGATGTAACCAGAGAAAATGGGAAGCTAATGTACAATCTCTTCATGGAGTACGCCGCCGGTGGCTCTCTCACCGACGAAATCTTCCGGAGTGGTGGCTGGATTAAGGAGGCGGCGGCGGCGTTTTACACGCGTCAAATTGTTAGAGGATTAGAGTACTTGCACAAACAGGGTTTGGTGCATTGTGATATCAAAGCTAAGAATATTTTAATCGGTGGAGATGGTTTGAAGATTGCTGATTTCGGATGCTCCAAATGGGTCTGTGTGGCGGAGGCGACGATCGGCGGAACGCCGATGTTCATGGCACCGGAAGTGGCGCGTGGGGAAAAACAGGGGATTTCCTCTGACATTTGGGCACTTGGGTGTACTTTAATTGAAATGGTCACCGGCGCCCCACCATGGCCCATTTCCGGCGACCCTGTTTCGGTGCTGTACCGGATCGGATATTCCGGCGACTCACCGGAAATTCCGAGCTTTTTATCGAAGAAAGCGAAGGATTTTTTAAGGAAATGCTTGAGAAGTGACCCAACAGAACGATGGAGCGCAAGTCAACTTCTTGAACATCCATTTTTGGGGGAATTGAGTTCTGGGTTAGAGGAAATCAAGGAATTACATCCACATTCCGAATCCCCCACGAGTATTTTGGATCAAAGCCTCTGGAATTCGTTAGAAGAAGAATCAGAAACACTGTTGAAAACAGAGCAATGGGATGATGATGATGAAAGAATCAAACGGCTGGCGATGTTTTCAGGAGAAATTAAATGGGAATTGGGAGATGAGAATTGGATCACAATCAGAAGCAGTATGGATGGTGAAGATGAAGATGAATCCAAATTAGAAGAAAAGATTTAG 1038 48.94 MAWTRRSAVGNGSSATVYLASAASSGELFAVKSADLLKSDFLKTEQRILSSLSHPSIVGYRGFDVTRENGKLMYNLFMEYAAGGSLTDEIFRSGGWIKEAAAAFYTRQIVRGLEYLHKQGLVHCDIKAKNILIGGDGLKIADFGCSKWVCVAEATIGGTPMFMAPEVARGEKQGISSDIWALGCTLIEMVTGAPPWPISGDPVSVLYRIGYSGDSPEIPSFLSKKAKDFLRKCLRSDPTERWSASQLLEHPFLGELSSGLEEIKELHPHSESPTSILDQSLWNSLEEESETLLKTEQWDDDDERIKRLAMFSGEIKWELGDENWITIRSSMDGEDEDESKLEEKI 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22938320 22939357 + Lsi11G014400.1 Lsi11g01440 674607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01440 345 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01440 345 PANTHER MAP KINASE KINASE KINASE 1 335 - -
Lsi11g01440 345 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Lsi11g01440 345 CDD STKc_MAPKKK 3 253 - -
Lsi11g01440 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Lsi11g01440 345 Gene3D Transferase(Phosphotransferase) domain 1 2 317 - -
Lsi11g01440 345 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01440 345 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01440 345 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 335 - -
Lsi11g01440 345 SUPERFAMILY Protein kinase-like (PK-like) 6 294 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01269 Lsi-Chr2:16870314 Lsi11g01440 Lsi-Chr11:22938320 5.35E-64 dispersed
Lsi02g01893 Lsi-Chr2:24833368 Lsi11g01440 Lsi-Chr11:22938320 1.20E-100 dispersed
Lsi11g00542 Lsi-Chr11:5665789 Lsi11g01440 Lsi-Chr11:22938320 4.20E-53 dispersed
Lsi11g01440 Lsi-Chr11:22938320 Lsi02g02474 Lsi-Chr2:31238386 3.16E-49 dispersed
Lsi01g00445 Lsi-Chr1:3704520 Lsi11g01440 Lsi-Chr11:22938320 1.30E-113 wgd
Lsi10g00114 Lsi-Chr10:1804629 Lsi11g01440 Lsi-Chr11:22938320 1.13E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84052 PF00069 Pkinase 6.40E-57 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01440 K20716 - csv:101205351 592.423