Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01463 ATGCCAGCCGGAATGATGATTCCAGCGAGAAACACGGCGTCGTCGATGATCGGAAGGAATGGAAATATTGGGATTTTTGGGTCTCCAGCCAGCCTTGTTCTTGGTCAAGAAATACAAGGAGTGGAAATTGGAGAAAATGAATATGGAAGAATGAGAGAAACAGAAGAATTTGAGAGTGGGACAAAATCAAGCAGCGAGAACCACGAGGTTGGCTCTGGCGATGACCAACTCAACCAACGCCCCAAAAAAAAGCGTTACCACCGCCACACTCAGCACCAGATCCAACAAATGGAAGCGTACATCGATCGAATTTCAGCTATAGCAGCAAAATACGTTGGAAAGCCAGTATCAAACTACCCTCTTCTTTCCTCACCAATTCCATCACGCCCTCTAGAACTTGGAATGGGAAGTTATGGAGGCCACGATTCCGGTCTGGGAGCCGGAGGCGGGGACATGTATGGGGCAGCGAACCTTCTCCGAACCATAAGCGCACCATCGGAGGCGGACAAGCCGATAATTATCGAGCTTGCGGTTGCAGCGATGGAGGAGCTGGTCCGAATGGCTCAGATGGGTGAGCCATTTTGGATGACAGGCGTTGATGGGTCAACGGCTGTGCTTAATGAAGATGAATATGTTAGAAGCTTTCCTAGAGGAATTGGTCCTAAGCCCTCTGGGTTTAGTTGTGAAGCTTCTCGTGCTACTGCTGTTGTCATTATGAATCATATTAGCCTCGTTGAGATGCTCATGGATGTGATGACATCCGAATTGCAAGTGCCTTCGCCCCTTGTTCCAACTCGGGAGAGCTATTTCGTGAGGTATTGTAAACAACATGGTGAGGGAACATGGGCTGTGGTGGATGTTTCCTTAGACAATTTACGCCCAGCTCCTGCCCTTAGATGTAGAAGAAGACCATCCGGCTGCTTAATCCAAGAAATGCCCAATGGCTATTCTAAGGTTACGTGGGTTGAGCATGTTGAGGTGGATGACCGTGGGGTCCACAGTTTATACAAACAACTAGTAACCTCTGGCCACGCGTTCGGCGCTAAGCGTTGGATTGCCACGTTGGATCGTCAATGTGAACGGCTCGCCAGCGCCATGGCCACAAGTATTCCTACTGGTGATGCTGGAGTGATAACAAATCAAGAAGGAAGAAAGAGCATGTTGAAGTTGGCAGAGAGAATGGTGATGAGCTTTTGCGGCGGAGTGAGCGCATCGACCACACACACTTGGACGACTCTATCGGGAACTGGAGCTGACGACGTTAGAGTTATGACGAGAAAGAGCATTGACGATCCCGGCAGACCTCCCGGCATTGTCCTTAGTGCTGCCACTTCCTTTTGGCTTCCTCTTCCGCCCAACAGAGTCTTCCATTTTCTCAGAGATGAAAATTCTCGTAATGAGTGGGATATTCTTTCAAATGGTGGAGTTGTTCAAGAAATGGCTCATATTGCCAATGGCCGCGACACAGGCAACTGTGTTTCTTTGCTACGAGTTAACAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAAAGCAGCACAGATCAAACAGCCTCGTTTGTAATCTACGCGCCGGTGGACATTGTGTCCATCAACGTGGTACTAAACGGCGGAGATCCCGATTATGTGGCCCTTCTCCCCTCAGGATTCGCCATTCTTCCCGACGGAACTACGACGTCCAGCGGCGACGCCACCAATGGCGTGGCCGAACATGAGTCCGGCGGGTCGCTTTTAACGGTGGCGTTTCAGATTTTGGTTGACTCGGTTCCCACAGCTAAACTGTCTCTTGGGTCAGTCGCAACGGTCAACAATCTAATTGCGTGTACGGTTGAGAGAATTAAAGCCTCTTTGTCATGTGATAATCCTTGA 1875 49.23 MPAGMMIPARNTASSMIGRNGNIGIFGSPASLVLGQEIQGVEIGENEYGRMRETEEFESGTKSSSENHEVGSGDDQLNQRPKKKRYHRHTQHQIQQMEAYIDRISAIAAKYVGKPVSNYPLLSSPIPSRPLELGMGSYGGHDSGLGAGGGDMYGAANLLRTISAPSEADKPIIIELAVAAMEELVRMAQMGEPFWMTGVDGSTAVLNEDEYVRSFPRGIGPKPSGFSCEASRATAVVIMNHISLVEMLMDVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYKQLVTSGHAFGAKRWIATLDRQCERLASAMATSIPTGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPLPPNRVFHFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSTDQTASFVIYAPVDIVSINVVLNGGDPDYVALLPSGFAILPDGTTTSSGDATNGVAEHESGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCDNP 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23201740 23211020 + Lsi11G014630.1 Lsi11g01463 674630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01463 624 Gene3D - 236 358 IPR023393 -
Lsi11g01463 624 Pfam START domain 251 361 IPR002913 GO:0008289
Lsi11g01463 624 MobiDBLite consensus disorder prediction 46 63 - -
Lsi11g01463 624 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 251 621 IPR042160 -
Lsi11g01463 624 MobiDBLite consensus disorder prediction 45 91 - -
Lsi11g01463 624 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 251 621 - -
Lsi11g01463 624 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 47 100 - -
Lsi11g01463 624 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 101 251 - -
Lsi11g01463 624 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 101 251 IPR042160 -
Lsi11g01463 624 SUPERFAMILY Bet v1-like 380 616 - -
Lsi11g01463 624 SUPERFAMILY Bet v1-like 168 363 - -
Lsi11g01463 624 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 47 100 IPR042160 -
Lsi11g01463 624 ProSiteProfiles START domain profile. 166 364 IPR002913 GO:0008289
Lsi11g01463 624 CDD START_ArGLABRA2_like 170 360 - -
Lsi11g01463 624 SMART START_1 175 361 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00984 Lsi-Chr7:13412134 Lsi11g01463 Lsi-Chr11:23201740 2.07E-62 transposed
Lsi01g00412 Lsi-Chr1:3515519 Lsi11g01463 Lsi-Chr11:23201740 0 wgd
Lsi10g00143 Lsi-Chr10:2279076 Lsi11g01463 Lsi-Chr11:23201740 2.07E-20 wgd
Lsi11g01463 Lsi-Chr11:23201740 Lsi02g00624 Lsi-Chr2:5553402 2.37E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01463 K09338 - csv:101219415 926.006