Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01469 ATGACAATTTTAAGTCTATCAAAATCACACTTAAAACTTCTCTTCTTCAAAACCATGGCCATTAGTCCAAAGCTTCTCTTCCTTTTCTTTTTGCAGCTAATGCTTGTATCGTCTTTCTCGAACATCGCTGGAGCCCAAGACTTGGCCGTCGGGTTTTACCAGGGTAGCTGCCCTGGGGTGGAGTACATCGTTGCCAAAACGGTGGCACTATATATTAAGAAACAACCATCAATAGCTGCTTCTTTATTGAGGATACACTTCCATGACTGCTTTGTTAGGGGTTGTGATGGTTCTGTTCTGCTAAATTCTATAGCAAATAATCCAGCTGAGAAAGATGCATTTCCTAACCTTAGTCTAAGAGGTTTCAATGTCGTTGATGCCGTTAAAGCTGCTGTTGAAAAGCAATGCCCCGGCATCGTTTCTTGTGCTGATATCCTCGCTTTAATAGCTCGCGATGCTGTTAGAATGATTGGAGGCCCACTGTGGGAAGTTCCAACGGGAAGAAGAGACGGGACGGTATCAATCTCCAGAGAAGCGTTGATTAATTTGCCTCCTCCCTTCGCTAATATCTCATCTCTCAAAACAAGTTTCCTCTCCAAAGGTCTCTCCGTCAAAGATCTAGTCGTATTATCCGGAGCACACACAATCGGAGTCTCTCACTGCACCTCTTTCTCCAACCGCCTCTACAATTTCACAGGCAAAGGCGACGCCGATCCCAAACTAGACAAATACTACGCCGTCGCACTCAAGAATAAATGCAAGCCAAATGACCAGAAAACCACCGTCGAGATGGATCCTGGAAGCTTCAAGACCTTCGATCAAGGTTACTACACTCTCGTCTCCAAGAGAAGAGGATTGTTCCAGTCCGATTCCGCTCTTCTCGACGATCCTGACACTAAAGCCTACGTTCAGTTTCAGGCCAGTACACGCGGCGCTACTTTCGCCGCCGATTTCGCCGAATCCATGGTTAATATGGGGAATATCGACGTCCTCACTGGCACCGACGGCGAAATTAGGAGTCGATGTGCTTTTAAACGGACAACGTGTTCTGCAGTTGCTTTTCAGTCGAGTGCTAGCTGTGAAGATCATCTAATTCTCTTCTTCAAAACCATGGCCATTAGTCCAAAACTTTTCTTCCTTCTCTTTTTACAGCTAATGCTTGTATCGTCTCTCTCGAACATCACCGAAGCAAAAAAGTTGGCAGTCGGGTTTTATCGGGGTAGTTGCCCGGGGGTAGAGTATATCGTCGCCAAAACGGTGGCTCAATATATTAAGAAACAACCAACTCTTGCTGCTTCTTTATTGAGGATGCACTTCCATGATTGCTTTGTTAGGGGTTGTGATGGTTCTGTGCTGCTAAATTCCAAACCAAACAACCAAGCTGAAAAAGATTCTTTCCCCAACCTTAGTTTAAGAGGTTTCAATGTCGTTGACATTGTTAAAGCTGCCGTCGAAAAGCAGTGCCCTGGCGTCGTTTCTTGTGCTGACATCCTCGCTTTGATAGCCCGTGATGTCGTTAGAATGATTGGAGGGCCACTATGGAAAGTTCCAACAGGAAGAAGAGACGGAACAGTATCAATTTCTAGAGAAGCGTTGATTAATTTGCCTCCTCCCTTCGCTAACATCTCATCTCTCAAAACAAGTTTCCTCTCCAAAGGTCTCTCCGTCAAAGATCTAGTCGTATTATCCGGAGCACATACAATCGGAGTCTCTCACTGCACCTCCTTCTCCAACCGCCTGTACAATTTCACCGGCAAAGGCGATGCCGATCCCAAACTAGATAAATACTACGCCATCGCACTCAAGAAGAAATGCAAGCCAAATGACCAGAAAACCATCGTCGAGATGGATCCTGGAAGCTTCAAGACCTTCGATCAAGGTTACTACACTCTTGTCTCCAAGAGAAGAGGATTGTTCCAGTCCGATTCCGCTCTTCTCGACGATCCTGATACTAAAGCCTACGTTCTGCTTCAGGCCAATACACGTGGTGCTACTTTTGCCGCCGATTTCGCTAAATCTATGGTTAATATGGGGAATATCGGCGTCCTCACCGGCACTGATGGCGAAATTAGGCGGCGATGTGCTTTTGTTAATTGA 2097 45.83 MTILSLSKSHLKLLFFKTMAISPKLLFLFFLQLMLVSSFSNIAGAQDLAVGFYQGSCPGVEYIVAKTVALYIKKQPSIAASLLRIHFHDCFVRGCDGSVLLNSIANNPAEKDAFPNLSLRGFNVVDAVKAAVEKQCPGIVSCADILALIARDAVRMIGGPLWEVPTGRRDGTVSISREALINLPPPFANISSLKTSFLSKGLSVKDLVVLSGAHTIGVSHCTSFSNRLYNFTGKGDADPKLDKYYAVALKNKCKPNDQKTTVEMDPGSFKTFDQGYYTLVSKRRGLFQSDSALLDDPDTKAYVQFQASTRGATFAADFAESMVNMGNIDVLTGTDGEIRSRCAFKRTTCSAVAFQSSASCEDHLILFFKTMAISPKLFFLLFLQLMLVSSLSNITEAKKLAVGFYRGSCPGVEYIVAKTVAQYIKKQPTLAASLLRMHFHDCFVRGCDGSVLLNSKPNNQAEKDSFPNLSLRGFNVVDIVKAAVEKQCPGVVSCADILALIARDVVRMIGGPLWKVPTGRRDGTVSISREALINLPPPFANISSLKTSFLSKGLSVKDLVVLSGAHTIGVSHCTSFSNRLYNFTGKGDADPKLDKYYAIALKKKCKPNDQKTIVEMDPGSFKTFDQGYYTLVSKRRGLFQSDSALLDDPDTKAYVLLQANTRGATFAADFAKSMVNMGNIGVLTGTDGEIRRRCAFVN 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23252468 23261527 + Lsi11G014690.1 Lsi11g01469 674636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01469 698 ProSiteProfiles Plant heme peroxidase family profile. 399 698 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 SUPERFAMILY Heme-dependent peroxidases 48 343 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PANTHER PEROXIDASE 32 345 - -
Lsi11g01469 698 Pfam Peroxidase 65 307 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 Pfam Peroxidase 416 659 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 Gene3D Peroxidase, domain 2 536 677 - -
Lsi11g01469 698 Gene3D Peroxidase, domain 2 184 325 - -
Lsi11g01469 698 ProSiteProfiles Plant heme peroxidase family profile. 47 346 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PANTHER PEROXIDASE 25-RELATED 32 345 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PANTHER PEROXIDASE 25-RELATED 381 697 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 SUPERFAMILY Heme-dependent peroxidases 400 698 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PRINTS Haem peroxidase superfamily signature 140 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PRINTS Haem peroxidase superfamily signature 79 93 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PRINTS Haem peroxidase superfamily signature 158 170 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PRINTS Haem peroxidase superfamily signature 265 280 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PRINTS Haem peroxidase superfamily signature 206 221 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 ProSitePatterns Peroxidases active site signature. 431 442 IPR019794 GO:0004601
Lsi11g01469 698 Gene3D - 403 698 - -
Lsi11g01469 698 CDD secretory_peroxidase 399 697 IPR033905 GO:0004601|GO:0042744
Lsi11g01469 698 Gene3D - 51 344 - -
Lsi11g01469 698 ProSitePatterns Peroxidases proximal heme-ligand signature. 558 568 IPR019793 -
Lsi11g01469 698 ProSitePatterns Peroxidases active site signature. 79 90 IPR019794 GO:0004601
Lsi11g01469 698 PANTHER PEROXIDASE 381 697 - -
Lsi11g01469 698 CDD secretory_peroxidase 48 344 IPR033905 GO:0004601|GO:0042744
Lsi11g01469 698 ProSitePatterns Peroxidases proximal heme-ligand signature. 206 216 IPR019793 -
Lsi11g01469 698 PRINTS Plant peroxidase signature 557 569 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PRINTS Plant peroxidase signature 491 501 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PRINTS Plant peroxidase signature 409 428 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PRINTS Plant peroxidase signature 433 453 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PRINTS Plant peroxidase signature 472 485 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PRINTS Plant peroxidase signature 510 525 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PRINTS Plant peroxidase signature 631 648 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PRINTS Plant peroxidase signature 615 630 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01469 698 PRINTS Plant peroxidase signature 672 685 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02513 Lsi-Chr2:31592043 Lsi11g01469 Lsi-Chr11:23252468 4.46E-85 dispersed
Lsi02g02514 Lsi-Chr2:31606023 Lsi11g01469 Lsi-Chr11:23252468 1.70E-91 dispersed
Lsi11g01469 Lsi-Chr11:23252468 Lsi11g01470 Lsi-Chr11:23267623 1.12E-99 tandem
Lsi01g02037 Lsi-Chr1:28112257 Lsi11g01469 Lsi-Chr11:23252468 1.53E-29 transposed
Lsi02g00534 Lsi-Chr2:4638067 Lsi11g01469 Lsi-Chr11:23252468 1.18E-76 transposed
Lsi03g00127 Lsi-Chr3:1773109 Lsi11g01469 Lsi-Chr11:23252468 3.23E-49 transposed
Lsi09g01386 Lsi-Chr9:21880522 Lsi11g01469 Lsi-Chr11:23252468 1.30E-103 transposed
Lsi11g01605 Lsi-Chr11:24387031 Lsi11g01469 Lsi-Chr11:23252468 8.59E-65 transposed
Lsi10g00150 Lsi-Chr10:2437499 Lsi11g01469 Lsi-Chr11:23252468 7.02E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01469 - K00430 egu:105052151 731.865