Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01470 ATGGAGCTCTTTCGTTGTCTTGTCTTTCTAATTGTATGTGTTTTAGGACTTGCTAGCTCAGGCCAAGCTCAGCTAGAGCTTGGGTACTATGCAAAGAGTTGTCCTCGTGCCGAGAAAATCGTCTACGATTACGTCTACAAGAACATTCCCAAAGTTCCTAGTTTGGCCGCTGCCTTACTTAGAATGCATTTCCATGATTGCTTCGTTCAGGGTTGTGATGCGTCTGTGCTTCTAAACTCAACTGCCAGCAACCAAAGTGAGAAAGTGTCTCCACCAAATCTATCATTGAGAGGCTTTGACTTCATTGATAAAATTAAGAAACTTTTGGAAGCTGAGTGCCCTGGAATCGTCTCATGCGCGGACATTATTTCTCTAGTGGCAAGAGACTCCGTTGTTGCCATCGGCGGTCCATTTTGGAGGGTTCCGACCGGAAGAAGAGACGGTCTGATCTCAAAATTCTCAGAAGCTTTGGTAAACATTCCTCCACCGTTTGCCAACTTGTCAACTCTACAACAACAGTTCGCTAATAAGGGTCTTGATCTCAAAGACCTAGTTTTACTTTCAGACCCATCACTCGACAGCCAATACGCGGCAAATCTCAAGGCAAAGAAATGCAAAAGCATTAGCGCCAATGGCCTAGTGGAAATGGACCCTGGCAGTTTCAGAACCTTCGATCTCAGCTACTACTCCCTTCTTTTGAAGCGCCGAGGGCTGTTCCAGTCCGACGCGGCTTTGACCACCAGCGCAGCCACCAAGGCCTTCGTCACCGACCTGCTCAATGGCTCCGTTCAGAACTTCTTCGCCCAGTTTGGGTTAGCCATGGAGAAGATGGGTCGGATCGGGGTCAAGACTGGGTCCGAGGGTGAGATTCGCAACCACTGCGCTCTTGTAAATGCCTAG 900 48.33 MELFRCLVFLIVCVLGLASSGQAQLELGYYAKSCPRAEKIVYDYVYKNIPKVPSLAAALLRMHFHDCFVQGCDASVLLNSTASNQSEKVSPPNLSLRGFDFIDKIKKLLEAECPGIVSCADIISLVARDSVVAIGGPFWRVPTGRRDGLISKFSEALVNIPPPFANLSTLQQQFANKGLDLKDLVLLSDPSLDSQYAANLKAKKCKSISANGLVEMDPGSFRTFDLSYYSLLLKRRGLFQSDAALTTSAATKAFVTDLLNGSVQNFFAQFGLAMEKMGRIGVKTGSEGEIRNHCALVNA 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23267623 23269234 + Lsi11G014700.1 Lsi11g01470 674637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01470 299 Pfam Peroxidase 49 257 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Lsi11g01470 299 Gene3D Peroxidase, domain 2 190 277 - -
Lsi11g01470 299 Gene3D Peroxidase, domain 2 161 188 - -
Lsi11g01470 299 Gene3D - 278 298 - -
Lsi11g01470 299 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 PRINTS Plant peroxidase signature 231 248 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 PRINTS Plant peroxidase signature 272 285 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 PANTHER PEROXIDASE 25-RELATED 189 298 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 PANTHER PEROXIDASE 189 298 - -
Lsi11g01470 299 PANTHER PEROXIDASE 12 188 - -
Lsi11g01470 299 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 PRINTS Haem peroxidase superfamily signature 217 232 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 ProSiteProfiles Plant heme peroxidase family profile. 24 298 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 Gene3D - 29 160 - -
Lsi11g01470 299 CDD secretory_peroxidase 24 297 IPR033905 GO:0004601|GO:0042744
Lsi11g01470 299 SUPERFAMILY Heme-dependent peroxidases 24 298 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi11g01470 299 PANTHER PEROXIDASE 25-RELATED 12 188 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00150 Lsi-Chr10:2437499 Lsi11g01470 Lsi-Chr11:23267623 1.60E-150 dispersed
Lsi11g01470 Lsi-Chr11:23267623 Lsi03g00774 Lsi-Chr3:11036102 2.66E-75 dispersed
Lsi11g01469 Lsi-Chr11:23252468 Lsi11g01470 Lsi-Chr11:23267623 1.12E-99 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01470 K00430 - pop:7491786 394.43