Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01496 ATGGAGGAAGATAGAAATAGAGGAAAGGGAACATGTTTGTTGCATAGCAGAAGTAGTGAAATGGTGGCCAAAAGAAATGTCAAGAACTTGGTCACCATCAGCTGGTTTGCAGAGGATTTGATGTCTTTTTTCCTTTTGTACTCATTTGTGTTTTTAATTTCTGTCGTTAATTGCTTTGCTAAAGATATCTTAGAGTATAAGAGTTGCATAAGTGATGAGAGAGGGGATACTCTTGTTTCGGCAGGATCGAGATTCGAACTTGGATTCTTTAAGCCATATGGCAGCTCTCATAGCAGAAGATACTTGGGAATATGGTATTACAAATCAAATCCAAGTACGGTTGTTTGGGTTGCCAATCGAGACAGCCCACTTGCTGGTTCAGATGGTATCTTTAAGATTGAGGATGATGGAAACCTCAAAGTATATGATGGAAATCGGAATCTTTATTGGTCAACAATCATTGGAAGTTCTGTACTCGAGGAAAGGACTCTGAAGCTATTGGATAATGGAAATCTGGTTTTGAGCTATGTAGATCAAGAAGACTTGTCTGAGCACATCCTCTGGCAGAGTTTTGATTACCCAACTGATACATTTCTTCCTGGCATGTTAATGGATGATAACTTGGTGCTGGCTTCATGGAAGAGCTATGATGACCCGGCTCAAGGGAACTTCACTTTTCAGCTAGATCAAGACGGAGGTCAATATGTCATTTGGAAAAGATCAGTTAAATTCTGGAAAAGTGGAGTTTCAGGTAAGTTTATTACCACTGATAAGATGCCTGCTGCATTGTTATACCTTTTGTCAAATTTCTCATCGAAAACTGTCCCAAACTTCTCCGTGCCACATCTCACATCATCATTGTATATTGATACAAGGCTAGTATTGAACAGCTCAGGTCAGCTTCATTATCTAAACTGGGAAGATCACAAAGTCTGGTCTCAGATTTGGGTGGAGCCGAGAGATAGATGCAGTGTGTATAATGCGTGCGGAGATTTTGCTAGCTGTAATAGTGAGGGTGGTATAGCTTGCAAATGCCTGCCTGGTTTTGAGCCTACCTCTCCAGTGAGTTGGAATATTGGAGATTATTCAGGTGGATGCATTAGGAAATCACCAATATGCAGTGTCAATGATGACGGTGACACTTTTTTGAGTCTAAAGATGATGAAAGCTGGAAACCCAGACTTCCAGTTTAATGCAAAGGATGACTTTGATTGCAAATTGGAGTGCCTTAACAACTGCCAGTGTCAGGCTTACTCATATTTGGAAGCTAATACCACAAGGCTGGGTGGGATTGATAATTCTGCTTGTTGGATTTGGTCTGGAGATCTCAACAATCTTCAGGATGAGTTTGATAATGGCCGTGACCTCAACGTTCGAGTAGCAGTTAGAGATCTAGAATCAACTGTCAGAAACTGTGGAACATGTGGGACAAACCTCATTCCTTATCCACTTAGCATGGGACCTGAATGTGGTGACCCCATGTACTTCAATTTTAACTGCAATGTGGCTACTGGCCAGGTGAACTTTGAAACAGCAGGTGGAACGTACAAGGTTAAATTCATTGATTCAGAAGCGCGGAAATTTTACATTCAAACCAAGGAAGCTGGTGATTGTGGTGATAAAAATTGGATAACCAAAGCCCTTCAGCTGAACCAGTCATCTCCTTTCCATGTAACCAGCTGGTGCAACTTTAAGGAGACCAATCCCGAGAATTTTCCTCTGAAAACCAGCAATGAAGCTGAAATTAGTTGGGAGCCTCCATTAGAGCCAACTTGTTCTTCAACTACGGACTGCAAAGGCTGGCCTTATTCAACTTGCAACATGAGTAAAGATGGAAATAGAAGATGTGTTTGCATAACAGACTTTCATTGGAATGGCTGGAGCTTGAATTGCACTACAGAGTCCCTTATTGATGTTTCCGTAGATCACAACAAAGGGAAGGATGGAAGAGGCAAAACGACCTTCTCTGTGATTATTGTTGCAACATCCATGTGTCTTGTCCTTCTGATGATTCTCTCATGTACTGTGTTTTATATTTACTTCTCCAAGACTGGGCTTATTGAAAGACAAGAAAGCAGGGGAAACAGCCAAAAAGATTTAATGCTTCACTTGTACGACAACGAGAGACGTGTCAAAGACCTGATCGAATCGGGTCGATTCAAGGAAGATGATACAAATGGAATAGACATTCCATTTTTTGATTTGGAAACAATTCTAATTGCAACAGGGAACTTCTCAAATGCAAATAAGCTTGGTCAAGGAGGCTTTGGGCCAGTTTACAAGGGCAAGTTTCCTAGTGGGCAGCAGATTGCTGTAAAGAGGCTCTCAAGTGGTTCAGGACAAGGCTTTGAGGAGTTTAAGAATGAGGTTTTGTTAATCGCGAAACTTCAGCATCGAAATCTCGTTAGACTTTTGGGCTACTGTGTTGAAGGAGATGAAAAGATGTTGCTTTATGAATATATGCCAAATAAAAGCTTAGACGCCTTTATATTTGATCAAAAGCTGAGTGTGGCATTGGATTGGGACATCCGCTTCAACGTCATGTTGGGAATTGCTCGTGGCCTTCTTTATTTACACCAAGATTCGAGGTTGAGAATTATTCATAGAGATTTGAAGACAAGCAACATTCTTCTAGATGAGGAGATGAATCCCAAAATATCCGACTTTGGCTTGGCGAGGATCTTTGGAGGGAAAGAAACTGCCACAAATACCAAAAGGGTGGTAGGCACTTATGGATACATGTCACCAGAATATGCATTGGATGGCATATTTTCTGTCAAATCTGACGTCTTTAGCTTCGGTGTGGTTGTAATCGAGATCATTAGTGGAAAAAGGAACACGGGATTCTATCACTCGGAGAAAGCTTTGAGTCTTCTGGGCTATGCTTGGGATTTATGGATGAAAGACGAGGGCTTGGATTTAATGGAGCAAACACTGAGCGAGAATTGCAAAAGAGATGAATATTTGAAGTGTTTAAATGTGGGGCTGCTGTGCGTGCAGGAAGATCCATGGGATCGACCCACCATGTCAAATGTGGTCTTCATGCTCGGCAGCGAAACCGCAACTCTTCCATCTCCAAAACCACCAGCTTTCGTCGTACGACGGTGCCCCTCAAGCAGAGCTTCCACCTCCACCAAACAAGAAACCTTCTCCCATAATGAGTTGACAGTCACGTTAAAAGATGGTAGATAG 3192 41.85 MEEDRNRGKGTCLLHSRSSEMVAKRNVKNLVTISWFAEDLMSFFLLYSFVFLISVVNCFAKDILEYKSCISDERGDTLVSAGSRFELGFFKPYGSSHSRRYLGIWYYKSNPSTVVWVANRDSPLAGSDGIFKIEDDGNLKVYDGNRNLYWSTIIGSSVLEERTLKLLDNGNLVLSYVDQEDLSEHILWQSFDYPTDTFLPGMLMDDNLVLASWKSYDDPAQGNFTFQLDQDGGQYVIWKRSVKFWKSGVSGKFITTDKMPAALLYLLSNFSSKTVPNFSVPHLTSSLYIDTRLVLNSSGQLHYLNWEDHKVWSQIWVEPRDRCSVYNACGDFASCNSEGGIACKCLPGFEPTSPVSWNIGDYSGGCIRKSPICSVNDDGDTFLSLKMMKAGNPDFQFNAKDDFDCKLECLNNCQCQAYSYLEANTTRLGGIDNSACWIWSGDLNNLQDEFDNGRDLNVRVAVRDLESTVRNCGTCGTNLIPYPLSMGPECGDPMYFNFNCNVATGQVNFETAGGTYKVKFIDSEARKFYIQTKEAGDCGDKNWITKALQLNQSSPFHVTSWCNFKETNPENFPLKTSNEAEISWEPPLEPTCSSTTDCKGWPYSTCNMSKDGNRRCVCITDFHWNGWSLNCTTESLIDVSVDHNKGKDGRGKTTFSVIIVATSMCLVLLMILSCTVFYIYFSKTGLIERQESRGNSQKDLMLHLYDNERRVKDLIESGRFKEDDTNGIDIPFFDLETILIATGNFSNANKLGQGGFGPVYKGKFPSGQQIAVKRLSSGSGQGFEEFKNEVLLIAKLQHRNLVRLLGYCVEGDEKMLLYEYMPNKSLDAFIFDQKLSVALDWDIRFNVMLGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMNPKISDFGLARIFGGKETATNTKRVVGTYGYMSPEYALDGIFSVKSDVFSFGVVVIEIISGKRNTGFYHSEKALSLLGYAWDLWMKDEGLDLMEQTLSENCKRDEYLKCLNVGLLCVQEDPWDRPTMSNVVFMLGSETATLPSPKPPAFVVRRCPSSRASTSTKQETFSHNELTVTLKDGR 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23434550 23438747 - Lsi11G014960.1 Lsi11g01496 674663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01496 1063 Pfam Domain of unknown function (DUF3403) 1018 1063 IPR021820 GO:0004674
Lsi11g01496 1063 CDD PAN_AP_plant 373 461 - -
Lsi11g01496 1063 ProSitePatterns Serine/Threonine protein kinases active-site signature. 866 878 IPR008271 GO:0004672|GO:0006468
Lsi11g01496 1063 Pfam S-locus glycoprotein domain 245 352 IPR000858 GO:0048544
Lsi11g01496 1063 CDD STKc_IRAK 751 1016 - -
Lsi11g01496 1063 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 57 1060 - -
Lsi11g01496 1063 Gene3D - 61 191 IPR036426 -
Lsi11g01496 1063 ProSiteProfiles Protein kinase domain profile. 745 1023 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01496 1063 Pfam Protein tyrosine and serine/threonine kinase 748 1014 IPR001245 GO:0004672|GO:0006468
Lsi11g01496 1063 ProSiteProfiles PAN/Apple domain profile. 373 461 IPR003609 -
Lsi11g01496 1063 SUPERFAMILY alpha-D-mannose-specific plant lectins 114 219 IPR036426 -
Lsi11g01496 1063 SMART serkin_6 745 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01496 1063 SUPERFAMILY Protein kinase-like (PK-like) 729 1044 IPR011009 -
Lsi11g01496 1063 Pfam D-mannose binding lectin 113 207 IPR001480 -
Lsi11g01496 1063 Pfam PAN-like domain 373 445 IPR003609 -
Lsi11g01496 1063 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 57 1060 - -
Lsi11g01496 1063 SMART ntp_6 377 460 IPR003609 -
Lsi11g01496 1063 ProSiteProfiles Bulb-type lectin domain profile. 63 187 IPR001480 -
Lsi11g01496 1063 Gene3D Phosphorylase Kinase; domain 1 710 820 - -
Lsi11g01496 1063 CDD B_lectin 75 194 IPR001480 -
Lsi11g01496 1063 SMART blect_4 67 194 IPR001480 -
Lsi11g01496 1063 Gene3D Transferase(Phosphotransferase) domain 1 821 1023 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00690 Lsi-Chr2:6170348 Lsi11g01496 Lsi-Chr11:23434550 3.88E-38 dispersed
Lsi10g00851 Lsi-Chr10:12522500 Lsi11g01496 Lsi-Chr11:23434550 0 dispersed
Lsi11g01496 Lsi-Chr11:23434550 Lsi02g00691 Lsi-Chr2:6176968 7.77E-59 dispersed
Lsi02g00185 Lsi-Chr2:1581109 Lsi11g01496 Lsi-Chr11:23434550 2.75E-110 transposed
Lsi01g00372 Lsi-Chr1:3277497 Lsi11g01496 Lsi-Chr11:23434550 1.74E-55 wgd
Lsi10g00850 Lsi-Chr10:12508401 Lsi11g01496 Lsi-Chr11:23434550 0 wgd
Lsi11g01496 Lsi-Chr11:23434550 Lsi02g00676 Lsi-Chr2:6059594 4.03E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84053 PF07714 PK_Tyr_Ser-Thr 5.70E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01496 - - csv:101217751 2038.46