Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01519 ATGACAATTTTCTCCTTCTTCACTAGAGCTTCGAGAGCTTTTCATGGCTCCCCTGCATATTCAAAGCTTCTAGTCATCAGCACCCTAAGTAGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGTTGACAGTCCTATTGAGGAGTGCCCAAAAAAGAGAGTTTTGGTGCTTGGAACAGGATGGGCCGGTACCAGTTTTCTCAAGGATCTGGATGCTTCAAAATATGATGTTCAAGTTGTTTCGCCTCAGAATTATTTCTCATTTACTCCTTTACTGCCTAGTGTTACATGTGGATCAGTTGAAGCTCGAAGCATTGTTGAACCGGTTAGAAACATCGTGAAGAAGGTAATTTGTAGAAAAGGTGAAATTAAATTCTGGGAAGCTGAATGCATTAAGATTGATGCTGCTAACAAGAAGGTTTCCTGCCGGTCTAATGTTGACAATAACTTGGTTGGAAATAGGGAGTTTGCCTTAGAATATGACTATTTGGTAATAGCAATGGGAGCTCAAGTTAATACTTTTAATACTCCTGGTGTGAAGGAGAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAGAAGTGTGATAGATTGCTTTGAAATGGCTGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGTGTTGAATTTGCTGCAGAGCTTCACGACTTTTTTGAAGAAGATTTAGTTAACTTATATCCTTCAGTTAAAGATCTGGTGAAAATTTCAGTAATTCAATCTGGAGATCACATTTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCCGAACAAAAATTCCTAAGAGATGGTATCGATGTGTACACAGGATGTCGAGTTGTCAGTGTATCTGATAAAGAAATTAATATGAAGGTGAAATCAACTGGAGAACTTTGTTCGATGCCGCATGGACTAATTGTGTGGTCTACGGGCATTATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATCGCCGCCATATTTAAAGCCGCAGACAAAGATAACTCTGGAACCCTGACAGTTACAGAATTTCAAGATGTTCTAGATGATATCCTCATAAGATATCCTCAAGTAGAAATATTTTTGAGGAGCAAACATCTACGCGATGTAAAAGATCTATTGAAAGATTCTCAGGGACATGAGAACGAAATAGATATTGAAGGATTTAAGTCAGCTCTTTCTCATGCTGACACGCAGATGAAAAGTCTGCCTGCTACTGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTGCAGGTGCTTCAACCGTAGGGAGCATTGCACTGAAAATCCTGAAGGCCCTAGACGTTTTAAGAGTTCTGGACGTCATCAGTTTCTTCCCTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGGGGAGAACAAGCAGCTGCAGAACTCCCTGGAGATTGGGTTTCCATGGGCCACAGCACTCAATGGCTCTGGTATTCTGTATATGCAAGCAAACAGGTCAGCTGGCGCACAAGGTATCTAGTGGTATCAGATTGGACTAGAAAGTTCATATTTGGAAGAGACTCAAGCCGCATCTGA 1734 41.98 MTIFSFFTRASRAFHGSPAYSKLLVISTLSSGGLLAYADSQSDVDSPIEECPKKRVLVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKVICRKGEIKFWEAECIKIDAANKKVSCRSNVDNNLVGNREFALEYDYLVIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRRSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPSVKDLVKISVIQSGDHILNAFDERISSFAEQKFLRDGIDVYTGCRVVSVSDKEINMKVKSTGELCSMPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIAAIFKAADKDNSGTLTVTEFQDVLDDILIRYPQVEIFLRSKHLRDVKDLLKDSQGHENEIDIEGFKSALSHADTQMKSLPATAQVAAQQGAYLCRCFNRREHCTENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRI 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23603900 23609326 - Lsi11G015190.1 Lsi11g01519 674686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01519 577 SUPERFAMILY FAD/NAD(P)-binding domain 53 275 IPR036188 -
Lsi11g01519 577 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Lsi11g01519 577 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B1, MITOCHONDRIAL 45 577 - -
Lsi11g01519 577 SMART efh_1 383 411 IPR002048 GO:0005509
Lsi11g01519 577 SUPERFAMILY FAD/NAD(P)-binding domain 222 376 IPR036188 -
Lsi11g01519 577 SUPERFAMILY EF-hand 332 459 IPR011992 -
Lsi11g01519 577 PANTHER NADH DEHYDROGENASE 45 577 IPR045024 GO:0003954|GO:0006116
Lsi11g01519 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 162 180 - -
Lsi11g01519 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Lsi11g01519 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 223 241 - -
Lsi11g01519 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 54 386 IPR023753 GO:0016491
Lsi11g01519 577 Gene3D - 47 401 - -
Lsi11g01519 577 Gene3D - 426 576 - -
Lsi11g01519 577 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01440 Lsi-Chr10:18472583 Lsi11g01519 Lsi-Chr11:23603900 2.31E-15 dispersed
Lsi01g00349 Lsi-Chr1:3101829 Lsi11g01519 Lsi-Chr11:23603900 3.34E-14 wgd
Lsi10g00864 Lsi-Chr10:12804487 Lsi11g01519 Lsi-Chr11:23603900 0 wgd
Lsi11g01519 Lsi-Chr11:23603900 Lsi02g00703 Lsi-Chr2:6289814 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01519 K03885 - csv:101203130 1102.81