Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01519 | ATGACAATTTTCTCCTTCTTCACTAGAGCTTCGAGAGCTTTTCATGGCTCCCCTGCATATTCAAAGCTTCTAGTCATCAGCACCCTAAGTAGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGTTGACAGTCCTATTGAGGAGTGCCCAAAAAAGAGAGTTTTGGTGCTTGGAACAGGATGGGCCGGTACCAGTTTTCTCAAGGATCTGGATGCTTCAAAATATGATGTTCAAGTTGTTTCGCCTCAGAATTATTTCTCATTTACTCCTTTACTGCCTAGTGTTACATGTGGATCAGTTGAAGCTCGAAGCATTGTTGAACCGGTTAGAAACATCGTGAAGAAGGTAATTTGTAGAAAAGGTGAAATTAAATTCTGGGAAGCTGAATGCATTAAGATTGATGCTGCTAACAAGAAGGTTTCCTGCCGGTCTAATGTTGACAATAACTTGGTTGGAAATAGGGAGTTTGCCTTAGAATATGACTATTTGGTAATAGCAATGGGAGCTCAAGTTAATACTTTTAATACTCCTGGTGTGAAGGAGAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAGAAGTGTGATAGATTGCTTTGAAATGGCTGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGTGTTGAATTTGCTGCAGAGCTTCACGACTTTTTTGAAGAAGATTTAGTTAACTTATATCCTTCAGTTAAAGATCTGGTGAAAATTTCAGTAATTCAATCTGGAGATCACATTTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCCGAACAAAAATTCCTAAGAGATGGTATCGATGTGTACACAGGATGTCGAGTTGTCAGTGTATCTGATAAAGAAATTAATATGAAGGTGAAATCAACTGGAGAACTTTGTTCGATGCCGCATGGACTAATTGTGTGGTCTACGGGCATTATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATCGCCGCCATATTTAAAGCCGCAGACAAAGATAACTCTGGAACCCTGACAGTTACAGAATTTCAAGATGTTCTAGATGATATCCTCATAAGATATCCTCAAGTAGAAATATTTTTGAGGAGCAAACATCTACGCGATGTAAAAGATCTATTGAAAGATTCTCAGGGACATGAGAACGAAATAGATATTGAAGGATTTAAGTCAGCTCTTTCTCATGCTGACACGCAGATGAAAAGTCTGCCTGCTACTGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTGCAGGTGCTTCAACCGTAGGGAGCATTGCACTGAAAATCCTGAAGGCCCTAGACGTTTTAAGAGTTCTGGACGTCATCAGTTTCTTCCCTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGGGGAGAACAAGCAGCTGCAGAACTCCCTGGAGATTGGGTTTCCATGGGCCACAGCACTCAATGGCTCTGGTATTCTGTATATGCAAGCAAACAGGTCAGCTGGCGCACAAGGTATCTAGTGGTATCAGATTGGACTAGAAAGTTCATATTTGGAAGAGACTCAAGCCGCATCTGA | 1734 | 41.98 | MTIFSFFTRASRAFHGSPAYSKLLVISTLSSGGLLAYADSQSDVDSPIEECPKKRVLVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKVICRKGEIKFWEAECIKIDAANKKVSCRSNVDNNLVGNREFALEYDYLVIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRRSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPSVKDLVKISVIQSGDHILNAFDERISSFAEQKFLRDGIDVYTGCRVVSVSDKEINMKVKSTGELCSMPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIAAIFKAADKDNSGTLTVTEFQDVLDDILIRYPQVEIFLRSKHLRDVKDLLKDSQGHENEIDIEGFKSALSHADTQMKSLPATAQVAAQQGAYLCRCFNRREHCTENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRI | 577 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 23603900 | 23609326 | - | Lsi11G015190.1 | Lsi11g01519 | 674686 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01519 | 577 | SUPERFAMILY | FAD/NAD(P)-binding domain | 53 | 275 | IPR036188 | - | |
Lsi11g01519 | 577 | ProSitePatterns | EF-hand calcium-binding domain. | 392 | 404 | IPR018247 | - | |
Lsi11g01519 | 577 | PANTHER | EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B1, MITOCHONDRIAL | 45 | 577 | - | - | |
Lsi11g01519 | 577 | SMART | efh_1 | 383 | 411 | IPR002048 | GO:0005509 | |
Lsi11g01519 | 577 | SUPERFAMILY | FAD/NAD(P)-binding domain | 222 | 376 | IPR036188 | - | |
Lsi11g01519 | 577 | SUPERFAMILY | EF-hand | 332 | 459 | IPR011992 | - | |
Lsi11g01519 | 577 | PANTHER | NADH DEHYDROGENASE | 45 | 577 | IPR045024 | GO:0003954|GO:0006116 | |
Lsi11g01519 | 577 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 162 | 180 | - | - | |
Lsi11g01519 | 577 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 56 | 75 | - | - | |
Lsi11g01519 | 577 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 223 | 241 | - | - | |
Lsi11g01519 | 577 | Pfam | Pyridine nucleotide-disulphide oxidoreductase | 54 | 386 | IPR023753 | GO:0016491 | |
Lsi11g01519 | 577 | Gene3D | - | 47 | 401 | - | - | |
Lsi11g01519 | 577 | Gene3D | - | 426 | 576 | - | - | |
Lsi11g01519 | 577 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 379 | 414 | IPR002048 | GO:0005509 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi10g01440 | Lsi-Chr10:18472583 | Lsi11g01519 | Lsi-Chr11:23603900 | 2.31E-15 | dispersed | |
Lsi01g00349 | Lsi-Chr1:3101829 | Lsi11g01519 | Lsi-Chr11:23603900 | 3.34E-14 | wgd | |
Lsi10g00864 | Lsi-Chr10:12804487 | Lsi11g01519 | Lsi-Chr11:23603900 | 0 | wgd | |
Lsi11g01519 | Lsi-Chr11:23603900 | Lsi02g00703 | Lsi-Chr2:6289814 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01519 | K03885 | - | csv:101203130 | 1102.81 |