Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01525 | ATGGGTTGGAAGAGATCTTCGAGGAATGGCAATTTGAGGATCTGCGTGCAGGTTTTAGTCGGATTCGTGATCTGCGCAGCTCAAGTTCTTTTCGGAATTACGAATCCAGGGGATTTTTCTGCTATTAGTAGCTTACATACCGCATTGGGACTTCCCAGTCTTCCTGGATGGGGCATCGGGCAAGACCCTTGCGGAGATGCATGGCAGGGTGTTGTGTGTAATGATTCGAGCATCATTAAAATAATCATTAATGCTGCTAATTTGGGAGGTGAACTTGGTGACAACTTGGGATTGTTTTCTTCGATCCAAACAATTGATTTAAGCAACAATCATATAGGGGGAAGTATACCATCCAGTTTACCGGTTACCATGCAGAACCTTTTTCTTTCAGCTAATGAGTTCACGGGAAGCATTCCGAGTTCATTATCAACTTTGATTCAACTGACAGCAATGTCGTTGAATGATAACAAATTAAGCGGACAAATACCAGATTCCTTTCAAGCCATTTCTCAATTGGTCAATTTAGACTTATCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGTAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAACAATCAGCTGTCGGGGACCCTTGATGTTCTACAAGACCTTCCACTAAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCGGAGAAGGTGCTGAGTATCCCTAATTTTAGAAAGGATGGAAACCCATTTAATTCTTCTGTTTCTCCGACATCTCCTCCTGTATCTCCTTCTCCACCATCAAAGCCAGCACCAGCACCGCCAGTTTCTGGAGCACCACCAGTTTCTGGAGCACCACCATCTTCTCAACAAAAACCTAAGAAACAGGCTGATGGACCATCGGCACCTGAGGAATCCAGTTCTGGAAAAAATAAGAAGAGCACTAAAAGGGTTGTTTTAATAACAATTGCAGTGGTCTTGTCATTCATAATTTTGGTCTTGGCATGTGTGCTCTTTATGCCAAGGTGCAGAAGAAGAAGAGTTGATAGTGTTTCCAGGCGACATCAGATAGGTGCTTATAGGGGTGAGAGAGAGAATGCTGGAAATCAGGGAGCCATGCCCCATACAAATGATCAGATACCTAAAGTTCCAAAAGAGCCAGTTGTAAGGCCGAGGCAGGAAACCCAAGCAGAGGCTCAGAAGGTTCCAAAAGATCATGAAGAGAGAGAGAGAAACATGCCAAGAATGAGTGCTATTCCAAAGAAGGATCATCATGAAGTAGATATGAGCGCACTCGATGTCTATCTAATGCCTCCCCCTCCCCCACCACCACCTCCTCCCCCTCCCCCTCCCCCTCCTGTTGAAGAGGTCACTGCTGTGCCCACTGTTCCAGTCGAAGCTCCTCCCTTGAAGCCTCTCACTAAACATAGAGTTACCTCAACTTTTGCAAAATCTTTTACCATTGCGTCCCTTCAGCAATATACAAACAGCTTTTCACAAGAGAATCTTCTAGGAGAAGGAATGCTGGGGAGTGTTTATAGGGCACAGTTTCCCAGTGGGAAGTTACTGGCCGTCAAGAAACTGGATAAGAGAGCATTCAGTCAGCAAAAGGATGATGAATTTCTTGAGTTGGTCAATAATATCGATAGAATCCGGCATGCTAATGTGGTTGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGCAGTGGTGGAACATTGCAGGATGCACTGCACTCAGACGAAGAGTTCAGAAAGAAACTTTCGTGGAATGCCCGCATTAGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGCCAGCCACCTGTTATTCATAGGAATTTCAAGTCTGCAAATGTCCTACTTGATGATGATCTTTCAGTGCGTGTTTCAGATTGTGGGCTGGCTCCATTAATATCCAAAGGAGCTGTTAGTCAGCTATCTGGTCAGCTTCTAACAGCATATGGTTACGGAGCACCAGAATTTGAATCAGGAGTTTATACACTTGAGAGTGACGTTTACAGCTTCGGTGTGGTTATGCTGGAACTTCTAACTGGCCGGATGTCTTATGACAGAACAAGGACCCGAGGTGAGCAGTTTCTTGTCAGATGGGCGATTCCGCAGCTTCACGACATAGAGGCATTGACAAGCATGGTTGATCCTTCTCTCAATGGTCGATACCCTGCCAAATCCTTATCGTACTTTGCCGATATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCAATGTCGTCAGTTGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCACATGGCAGTGGTTCAAGTGAAGATTGA | 2361 | 45.07 | MGWKRSSRNGNLRICVQVLVGFVICAAQVLFGITNPGDFSAISSLHTALGLPSLPGWGIGQDPCGDAWQGVVCNDSSIIKIIINAANLGGELGDNLGLFSSIQTIDLSNNHIGGSIPSSLPVTMQNLFLSANEFTGSIPSSLSTLIQLTAMSLNDNKLSGQIPDSFQAISQLVNLDLSNNNLSGPLPPSVSNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKVLSIPNFRKDGNPFNSSVSPTSPPVSPSPPSKPAPAPPVSGAPPVSGAPPSSQQKPKKQADGPSAPEESSSGKNKKSTKRVVLITIAVVLSFIILVLACVLFMPRCRRRRVDSVSRRHQIGAYRGERENAGNQGAMPHTNDQIPKVPKEPVVRPRQETQAEAQKVPKDHEERERNMPRMSAIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPPVEEVTAVPTVPVEAPPLKPLTKHRVTSTFAKSFTIASLQQYTNSFSQENLLGEGMLGSVYRAQFPSGKLLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSGGTLQDALHSDEEFRKKLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFADIISKCVQSEPEFRPPMSSVVQDLLNMIRREPHGSGSSED | 786 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 23648953 | 23657756 | - | Lsi11G015250.1 | Lsi11g01525 | 674692 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01525 | 786 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 440 | 447 | - | - | |
Lsi11g01525 | 786 | Gene3D | Phosphorylase Kinase; domain 1 | 467 | 573 | - | - | |
Lsi11g01525 | 786 | MobiDBLite | consensus disorder prediction | 281 | 306 | - | - | |
Lsi11g01525 | 786 | ProSiteProfiles | Protein kinase domain profile. | 496 | 774 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01525 | 786 | Gene3D | Ribonuclease Inhibitor | 39 | 256 | IPR032675 | - | |
Lsi11g01525 | 786 | MobiDBLite | consensus disorder prediction | 255 | 280 | - | - | |
Lsi11g01525 | 786 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED | 23 | 785 | - | - | |
Lsi11g01525 | 786 | Gene3D | Transferase(Phosphotransferase) domain 1 | 575 | 778 | - | - | |
Lsi11g01525 | 786 | Pfam | Protein tyrosine and serine/threonine kinase | 499 | 770 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi11g01525 | 786 | Pfam | Leucine rich repeat | 124 | 182 | IPR001611 | GO:0005515 | |
Lsi11g01525 | 786 | SUPERFAMILY | Protein kinase-like (PK-like) | 472 | 770 | IPR011009 | - | |
Lsi11g01525 | 786 | SUPERFAMILY | L domain-like | 54 | 241 | - | - | |
Lsi11g01525 | 786 | MobiDBLite | consensus disorder prediction | 247 | 312 | - | - | |
Lsi11g01525 | 786 | MobiDBLite | consensus disorder prediction | 359 | 410 | - | - | |
Lsi11g01525 | 786 | MobiDBLite | consensus disorder prediction | 383 | 410 | - | - | |
Lsi11g01525 | 786 | PANTHER | OS01G0253100 PROTEIN | 23 | 785 | IPR045271 | GO:0004714|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01721 | Lsi-Chr3:28575599 | Lsi11g01525 | Lsi-Chr11:23648953 | 1.12E-34 | dispersed | |
Lsi03g01722 | Lsi-Chr3:28585611 | Lsi11g01525 | Lsi-Chr11:23648953 | 1.04E-38 | dispersed | |
Lsi07g00634 | Lsi-Chr7:6790676 | Lsi11g01525 | Lsi-Chr11:23648953 | 3.02E-48 | dispersed | |
Lsi11g01525 | Lsi-Chr11:23648953 | Lsi06g00150 | Lsi-Chr6:1564114 | 1.38E-75 | dispersed | |
Lsi01g00341 | Lsi-Chr1:2992647 | Lsi11g01525 | Lsi-Chr11:23648953 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84055 | PF07714 | PK_Tyr_Ser-Thr | 3.70E-42 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01525 | - | - | csv:101213734 | 1271.14 |