Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01525 ATGGGTTGGAAGAGATCTTCGAGGAATGGCAATTTGAGGATCTGCGTGCAGGTTTTAGTCGGATTCGTGATCTGCGCAGCTCAAGTTCTTTTCGGAATTACGAATCCAGGGGATTTTTCTGCTATTAGTAGCTTACATACCGCATTGGGACTTCCCAGTCTTCCTGGATGGGGCATCGGGCAAGACCCTTGCGGAGATGCATGGCAGGGTGTTGTGTGTAATGATTCGAGCATCATTAAAATAATCATTAATGCTGCTAATTTGGGAGGTGAACTTGGTGACAACTTGGGATTGTTTTCTTCGATCCAAACAATTGATTTAAGCAACAATCATATAGGGGGAAGTATACCATCCAGTTTACCGGTTACCATGCAGAACCTTTTTCTTTCAGCTAATGAGTTCACGGGAAGCATTCCGAGTTCATTATCAACTTTGATTCAACTGACAGCAATGTCGTTGAATGATAACAAATTAAGCGGACAAATACCAGATTCCTTTCAAGCCATTTCTCAATTGGTCAATTTAGACTTATCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGTAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAACAATCAGCTGTCGGGGACCCTTGATGTTCTACAAGACCTTCCACTAAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCGGAGAAGGTGCTGAGTATCCCTAATTTTAGAAAGGATGGAAACCCATTTAATTCTTCTGTTTCTCCGACATCTCCTCCTGTATCTCCTTCTCCACCATCAAAGCCAGCACCAGCACCGCCAGTTTCTGGAGCACCACCAGTTTCTGGAGCACCACCATCTTCTCAACAAAAACCTAAGAAACAGGCTGATGGACCATCGGCACCTGAGGAATCCAGTTCTGGAAAAAATAAGAAGAGCACTAAAAGGGTTGTTTTAATAACAATTGCAGTGGTCTTGTCATTCATAATTTTGGTCTTGGCATGTGTGCTCTTTATGCCAAGGTGCAGAAGAAGAAGAGTTGATAGTGTTTCCAGGCGACATCAGATAGGTGCTTATAGGGGTGAGAGAGAGAATGCTGGAAATCAGGGAGCCATGCCCCATACAAATGATCAGATACCTAAAGTTCCAAAAGAGCCAGTTGTAAGGCCGAGGCAGGAAACCCAAGCAGAGGCTCAGAAGGTTCCAAAAGATCATGAAGAGAGAGAGAGAAACATGCCAAGAATGAGTGCTATTCCAAAGAAGGATCATCATGAAGTAGATATGAGCGCACTCGATGTCTATCTAATGCCTCCCCCTCCCCCACCACCACCTCCTCCCCCTCCCCCTCCCCCTCCTGTTGAAGAGGTCACTGCTGTGCCCACTGTTCCAGTCGAAGCTCCTCCCTTGAAGCCTCTCACTAAACATAGAGTTACCTCAACTTTTGCAAAATCTTTTACCATTGCGTCCCTTCAGCAATATACAAACAGCTTTTCACAAGAGAATCTTCTAGGAGAAGGAATGCTGGGGAGTGTTTATAGGGCACAGTTTCCCAGTGGGAAGTTACTGGCCGTCAAGAAACTGGATAAGAGAGCATTCAGTCAGCAAAAGGATGATGAATTTCTTGAGTTGGTCAATAATATCGATAGAATCCGGCATGCTAATGTGGTTGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGCAGTGGTGGAACATTGCAGGATGCACTGCACTCAGACGAAGAGTTCAGAAAGAAACTTTCGTGGAATGCCCGCATTAGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGCCAGCCACCTGTTATTCATAGGAATTTCAAGTCTGCAAATGTCCTACTTGATGATGATCTTTCAGTGCGTGTTTCAGATTGTGGGCTGGCTCCATTAATATCCAAAGGAGCTGTTAGTCAGCTATCTGGTCAGCTTCTAACAGCATATGGTTACGGAGCACCAGAATTTGAATCAGGAGTTTATACACTTGAGAGTGACGTTTACAGCTTCGGTGTGGTTATGCTGGAACTTCTAACTGGCCGGATGTCTTATGACAGAACAAGGACCCGAGGTGAGCAGTTTCTTGTCAGATGGGCGATTCCGCAGCTTCACGACATAGAGGCATTGACAAGCATGGTTGATCCTTCTCTCAATGGTCGATACCCTGCCAAATCCTTATCGTACTTTGCCGATATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCAATGTCGTCAGTTGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCACATGGCAGTGGTTCAAGTGAAGATTGA 2361 45.07 MGWKRSSRNGNLRICVQVLVGFVICAAQVLFGITNPGDFSAISSLHTALGLPSLPGWGIGQDPCGDAWQGVVCNDSSIIKIIINAANLGGELGDNLGLFSSIQTIDLSNNHIGGSIPSSLPVTMQNLFLSANEFTGSIPSSLSTLIQLTAMSLNDNKLSGQIPDSFQAISQLVNLDLSNNNLSGPLPPSVSNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKVLSIPNFRKDGNPFNSSVSPTSPPVSPSPPSKPAPAPPVSGAPPVSGAPPSSQQKPKKQADGPSAPEESSSGKNKKSTKRVVLITIAVVLSFIILVLACVLFMPRCRRRRVDSVSRRHQIGAYRGERENAGNQGAMPHTNDQIPKVPKEPVVRPRQETQAEAQKVPKDHEERERNMPRMSAIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPPVEEVTAVPTVPVEAPPLKPLTKHRVTSTFAKSFTIASLQQYTNSFSQENLLGEGMLGSVYRAQFPSGKLLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSGGTLQDALHSDEEFRKKLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFADIISKCVQSEPEFRPPMSSVVQDLLNMIRREPHGSGSSED 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23648953 23657756 - Lsi11G015250.1 Lsi11g01525 674692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01525 786 SUPERFAMILY Formin homology 2 domain (FH2 domain) 440 447 - -
Lsi11g01525 786 Gene3D Phosphorylase Kinase; domain 1 467 573 - -
Lsi11g01525 786 MobiDBLite consensus disorder prediction 281 306 - -
Lsi11g01525 786 ProSiteProfiles Protein kinase domain profile. 496 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01525 786 Gene3D Ribonuclease Inhibitor 39 256 IPR032675 -
Lsi11g01525 786 MobiDBLite consensus disorder prediction 255 280 - -
Lsi11g01525 786 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 23 785 - -
Lsi11g01525 786 Gene3D Transferase(Phosphotransferase) domain 1 575 778 - -
Lsi11g01525 786 Pfam Protein tyrosine and serine/threonine kinase 499 770 IPR001245 GO:0004672|GO:0006468
Lsi11g01525 786 Pfam Leucine rich repeat 124 182 IPR001611 GO:0005515
Lsi11g01525 786 SUPERFAMILY Protein kinase-like (PK-like) 472 770 IPR011009 -
Lsi11g01525 786 SUPERFAMILY L domain-like 54 241 - -
Lsi11g01525 786 MobiDBLite consensus disorder prediction 247 312 - -
Lsi11g01525 786 MobiDBLite consensus disorder prediction 359 410 - -
Lsi11g01525 786 MobiDBLite consensus disorder prediction 383 410 - -
Lsi11g01525 786 PANTHER OS01G0253100 PROTEIN 23 785 IPR045271 GO:0004714|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01525 - - - csv:101213734 1271.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01721 Lsi-Chr3:28575599 Lsi11g01525 Lsi-Chr11:23648953 1.12E-34 dispersed
Lsi03g01722 Lsi-Chr3:28585611 Lsi11g01525 Lsi-Chr11:23648953 1.04E-38 dispersed
Lsi07g00634 Lsi-Chr7:6790676 Lsi11g01525 Lsi-Chr11:23648953 3.02E-48 dispersed
Lsi11g01525 Lsi-Chr11:23648953 Lsi06g00150 Lsi-Chr6:1564114 1.38E-75 dispersed
Lsi01g00341 Lsi-Chr1:2992647 Lsi11g01525 Lsi-Chr11:23648953 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g488 . Blo15g00549 . Bda13g00653 . . . . Cmo11g01937 Cmo19g01004 . . . . . Cpe15g00790 Cpe04g00762 Bhi05g01832 . . . . . . . . . . . . . . . . Cone12ag1436 . Csa07g00420 . . . . . . Bpe14g00667 . Bma02g01363 Bma12g00749 . . . Cma11g01861 Cma19g00972 Car11g01549 Car19g00763 . . . . . . . . . . . . . . . . Lsi11g01525 . Chy01g00369 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g01525 . 34 784 Strubbelig Receptor Gene Family AT4G03390 62.1 1.9e-204 709.5
Lsi01g00341 . 17 751 Strubbelig Receptor Gene Family AT4G03390 54.1 4.2e-164 575.5
Lsi03g01722 . 9 735 Strubbelig Receptor Gene Family AT5G06820 53.5 5.7e-187 651.4
Lsi02g01068 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.7 3.5e-85 313.2
Lsi02g02850 . 425 740 Strubbelig Receptor Gene Family AT1G11130 50.3 1.1e-80 298.1
Lsi03g01722 . 9 735 Strubbelig Receptor Gene Family AT5G06820 53.5 5.7e-187 651.4
Lsi11g01525 . 34 784 Strubbelig Receptor Gene Family AT4G03390 62.1 1.9e-204 709.5
Lsi01g00341 . 17 751 Strubbelig Receptor Gene Family AT4G03390 54.1 4.2e-164 575.5
Lsi07g00634 . 1 765 Strubbelig Receptor Gene Family AT1G53730 56.2 1.3e-204 709.9
Lsi02g02850 . 1 767 Strubbelig Receptor Gene Family AT1G53730 55.5 1.3e-180 630.2
Lsi02g02850 . 6 757 Strubbelig Receptor Gene Family AT3G14350 51.2 3.9e-161 565.5
Lsi02g01068 . 149 711 Strubbelig Receptor Gene Family AT4G22130 63.8 8.8e-180 627.1
Lsi02g02850 . 419 759 Strubbelig Receptor Gene Family AT4G22130 60.1 4.2e-113 405.6
Lsi07g00634 . 404 781 Strubbelig Receptor Gene Family AT4G22130 54.5 1.5e-110 397.1
Lsi11g01525 . 481 776 Strubbelig Receptor Gene Family AT4G22130 61.6 2.0e-107 386.7
Lsi01g00341 . 464 751 Strubbelig Receptor Gene Family AT4G22130 60.5 2.2e-98 356.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84055 PF07714 PK_Tyr_Ser-Thr 3.70E-42 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01525 Lsi_Chr11 FPKM 0.684813 0.532883 0.785487 0.841023 0.274925 0.144217 0.379397 2.911325 3.926062 2.489493