Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01525 ATGGGTTGGAAGAGATCTTCGAGGAATGGCAATTTGAGGATCTGCGTGCAGGTTTTAGTCGGATTCGTGATCTGCGCAGCTCAAGTTCTTTTCGGAATTACGAATCCAGGGGATTTTTCTGCTATTAGTAGCTTACATACCGCATTGGGACTTCCCAGTCTTCCTGGATGGGGCATCGGGCAAGACCCTTGCGGAGATGCATGGCAGGGTGTTGTGTGTAATGATTCGAGCATCATTAAAATAATCATTAATGCTGCTAATTTGGGAGGTGAACTTGGTGACAACTTGGGATTGTTTTCTTCGATCCAAACAATTGATTTAAGCAACAATCATATAGGGGGAAGTATACCATCCAGTTTACCGGTTACCATGCAGAACCTTTTTCTTTCAGCTAATGAGTTCACGGGAAGCATTCCGAGTTCATTATCAACTTTGATTCAACTGACAGCAATGTCGTTGAATGATAACAAATTAAGCGGACAAATACCAGATTCCTTTCAAGCCATTTCTCAATTGGTCAATTTAGACTTATCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGTAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAACAATCAGCTGTCGGGGACCCTTGATGTTCTACAAGACCTTCCACTAAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCGGAGAAGGTGCTGAGTATCCCTAATTTTAGAAAGGATGGAAACCCATTTAATTCTTCTGTTTCTCCGACATCTCCTCCTGTATCTCCTTCTCCACCATCAAAGCCAGCACCAGCACCGCCAGTTTCTGGAGCACCACCAGTTTCTGGAGCACCACCATCTTCTCAACAAAAACCTAAGAAACAGGCTGATGGACCATCGGCACCTGAGGAATCCAGTTCTGGAAAAAATAAGAAGAGCACTAAAAGGGTTGTTTTAATAACAATTGCAGTGGTCTTGTCATTCATAATTTTGGTCTTGGCATGTGTGCTCTTTATGCCAAGGTGCAGAAGAAGAAGAGTTGATAGTGTTTCCAGGCGACATCAGATAGGTGCTTATAGGGGTGAGAGAGAGAATGCTGGAAATCAGGGAGCCATGCCCCATACAAATGATCAGATACCTAAAGTTCCAAAAGAGCCAGTTGTAAGGCCGAGGCAGGAAACCCAAGCAGAGGCTCAGAAGGTTCCAAAAGATCATGAAGAGAGAGAGAGAAACATGCCAAGAATGAGTGCTATTCCAAAGAAGGATCATCATGAAGTAGATATGAGCGCACTCGATGTCTATCTAATGCCTCCCCCTCCCCCACCACCACCTCCTCCCCCTCCCCCTCCCCCTCCTGTTGAAGAGGTCACTGCTGTGCCCACTGTTCCAGTCGAAGCTCCTCCCTTGAAGCCTCTCACTAAACATAGAGTTACCTCAACTTTTGCAAAATCTTTTACCATTGCGTCCCTTCAGCAATATACAAACAGCTTTTCACAAGAGAATCTTCTAGGAGAAGGAATGCTGGGGAGTGTTTATAGGGCACAGTTTCCCAGTGGGAAGTTACTGGCCGTCAAGAAACTGGATAAGAGAGCATTCAGTCAGCAAAAGGATGATGAATTTCTTGAGTTGGTCAATAATATCGATAGAATCCGGCATGCTAATGTGGTTGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGCAGTGGTGGAACATTGCAGGATGCACTGCACTCAGACGAAGAGTTCAGAAAGAAACTTTCGTGGAATGCCCGCATTAGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGCCAGCCACCTGTTATTCATAGGAATTTCAAGTCTGCAAATGTCCTACTTGATGATGATCTTTCAGTGCGTGTTTCAGATTGTGGGCTGGCTCCATTAATATCCAAAGGAGCTGTTAGTCAGCTATCTGGTCAGCTTCTAACAGCATATGGTTACGGAGCACCAGAATTTGAATCAGGAGTTTATACACTTGAGAGTGACGTTTACAGCTTCGGTGTGGTTATGCTGGAACTTCTAACTGGCCGGATGTCTTATGACAGAACAAGGACCCGAGGTGAGCAGTTTCTTGTCAGATGGGCGATTCCGCAGCTTCACGACATAGAGGCATTGACAAGCATGGTTGATCCTTCTCTCAATGGTCGATACCCTGCCAAATCCTTATCGTACTTTGCCGATATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCAATGTCGTCAGTTGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCACATGGCAGTGGTTCAAGTGAAGATTGA 2361 45.07 MGWKRSSRNGNLRICVQVLVGFVICAAQVLFGITNPGDFSAISSLHTALGLPSLPGWGIGQDPCGDAWQGVVCNDSSIIKIIINAANLGGELGDNLGLFSSIQTIDLSNNHIGGSIPSSLPVTMQNLFLSANEFTGSIPSSLSTLIQLTAMSLNDNKLSGQIPDSFQAISQLVNLDLSNNNLSGPLPPSVSNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKVLSIPNFRKDGNPFNSSVSPTSPPVSPSPPSKPAPAPPVSGAPPVSGAPPSSQQKPKKQADGPSAPEESSSGKNKKSTKRVVLITIAVVLSFIILVLACVLFMPRCRRRRVDSVSRRHQIGAYRGERENAGNQGAMPHTNDQIPKVPKEPVVRPRQETQAEAQKVPKDHEERERNMPRMSAIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPPVEEVTAVPTVPVEAPPLKPLTKHRVTSTFAKSFTIASLQQYTNSFSQENLLGEGMLGSVYRAQFPSGKLLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSGGTLQDALHSDEEFRKKLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFADIISKCVQSEPEFRPPMSSVVQDLLNMIRREPHGSGSSED 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23648953 23657756 - Lsi11G015250.1 Lsi11g01525 674692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01525 786 SUPERFAMILY Formin homology 2 domain (FH2 domain) 440 447 - -
Lsi11g01525 786 Gene3D Phosphorylase Kinase; domain 1 467 573 - -
Lsi11g01525 786 MobiDBLite consensus disorder prediction 281 306 - -
Lsi11g01525 786 ProSiteProfiles Protein kinase domain profile. 496 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01525 786 Gene3D Ribonuclease Inhibitor 39 256 IPR032675 -
Lsi11g01525 786 MobiDBLite consensus disorder prediction 255 280 - -
Lsi11g01525 786 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 23 785 - -
Lsi11g01525 786 Gene3D Transferase(Phosphotransferase) domain 1 575 778 - -
Lsi11g01525 786 Pfam Protein tyrosine and serine/threonine kinase 499 770 IPR001245 GO:0004672|GO:0006468
Lsi11g01525 786 Pfam Leucine rich repeat 124 182 IPR001611 GO:0005515
Lsi11g01525 786 SUPERFAMILY Protein kinase-like (PK-like) 472 770 IPR011009 -
Lsi11g01525 786 SUPERFAMILY L domain-like 54 241 - -
Lsi11g01525 786 MobiDBLite consensus disorder prediction 247 312 - -
Lsi11g01525 786 MobiDBLite consensus disorder prediction 359 410 - -
Lsi11g01525 786 MobiDBLite consensus disorder prediction 383 410 - -
Lsi11g01525 786 PANTHER OS01G0253100 PROTEIN 23 785 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01721 Lsi-Chr3:28575599 Lsi11g01525 Lsi-Chr11:23648953 1.12E-34 dispersed
Lsi03g01722 Lsi-Chr3:28585611 Lsi11g01525 Lsi-Chr11:23648953 1.04E-38 dispersed
Lsi07g00634 Lsi-Chr7:6790676 Lsi11g01525 Lsi-Chr11:23648953 3.02E-48 dispersed
Lsi11g01525 Lsi-Chr11:23648953 Lsi06g00150 Lsi-Chr6:1564114 1.38E-75 dispersed
Lsi01g00341 Lsi-Chr1:2992647 Lsi11g01525 Lsi-Chr11:23648953 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84055 PF07714 PK_Tyr_Ser-Thr 3.70E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01525 - - csv:101213734 1271.14