Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01535 ATGGCTCCCAACAGGATCTTCATGAATGGAAAAAGTCGTTCTTCTTGTATTTTCACGCAACAAGGTCGCAAGGGCATAAACCAGGATGCCATGGTTGTGTGGGAAGATTTCATGTCGGAGGACACAATCTTTTGTGGTGTATTTGATGGACATGGACCTTACGGTCATCTCGTTGCTCGAAAAGTGAGGGATACATTGCCTATAAAGTTGCTGTCGTTCTTCCAGTCTCCTCAGTTGAAGCAAAATGACTCTGGTAAAACCTGTTTCCGGAGGAATTTGAAGACACCTCCAGATTGTGAAGATTCTGAGAAATATGGTTTTGTAGAGGACTCGCAGAATTCGGTATGGAGAGATGCGTTTTTGAACTCGTATAAAGCTATGGATAAGGAGTTGAGATCACATCCTAATCTGGACTGCTTTTGTAGTGGTAGTACTGCAGTCACCATGATTAAACAGGGGTCAAATCTCTTCATGGGGTACATAGGGGACTCGAGAGCAATCCTCGCTTCGAAGGACGCCAATGATTCCACAGTGACCGTCCAATTGACCGTGGATCTTAAGCCAGATTTGCCAAGAGAAGCTGAAAGAATAAAACGATGTAAAGGCAGAGTCTTTGCATTGCAGGATGAACCTGAAGTGCCAAGGGTGTGGTTACCTTTCGATGATGCGCCCGGTTTAGCCATGGCTCGAGCATTTGGCGACTTCTGTTTGAAAGAATATGGAGTTATCTCTATACCTGAATTCTCTCACCGAACCCTCACCGATGCTGATCAGTTCATTGTTCTTGCATCAGATGGGGTATGGGATGTGTTGAGCAATGAAGAGGTGGTTGACATAGTGTCCTCAGCCCCAACCCGAGCATCAGCTGCGAGGTCCGTGGTGGACTCTGCTGCTCGTGAATGGAAACTCAAATACCCTACCTCAAAAATGGATGACTGTGCTGTCGTCTGCTTATTTTTGGACGGGAGGATGGACTCCGAATCCGACTGTGATGAACAAGGCTTCTCATCTGCAACATTGCGTAGTAATCATTCGGGTACTGCTGTCGAATCTGATGATGGTCAGAGGTCTGAGCCATGTTTGCAAAGGAATAACACAGTCAGATCATCCGAAGAAAGCAAGGGATTACCTGTCGACGATGGGGAGATTGGTGATGCTGTACCTGCAGAAGATCAAAACTGGTTGGGGTTGGAAGGAGTCACTCGAGTGAACTCACTTGTTCAACTCCCTAGATTTTCCGAGGAAAGGCCAGTGCCATAG 1260 46.51 MAPNRIFMNGKSRSSCIFTQQGRKGINQDAMVVWEDFMSEDTIFCGVFDGHGPYGHLVARKVRDTLPIKLLSFFQSPQLKQNDSGKTCFRRNLKTPPDCEDSEKYGFVEDSQNSVWRDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTMIKQGSNLFMGYIGDSRAILASKDANDSTVTVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRTLTDADQFIVLASDGVWDVLSNEEVVDIVSSAPTRASAARSVVDSAAREWKLKYPTSKMDDCAVVCLFLDGRMDSESDCDEQGFSSATLRSNHSGTAVESDDGQRSEPCLQRNNTVRSSEESKGLPVDDGEIGDAVPAEDQNWLGLEGVTRVNSLVQLPRFSEERPVP 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23687834 23689749 - Lsi11G015350.1 Lsi11g01535 674702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01535 419 SMART PP2C_4 3 318 IPR001932 -
Lsi11g01535 419 MobiDBLite consensus disorder prediction 331 390 - -
Lsi11g01535 419 CDD PP2Cc 13 320 IPR001932 -
Lsi11g01535 419 PANTHER ALPHABET, ISOFORM E-RELATED 7 407 - -
Lsi11g01535 419 SUPERFAMILY PP2C-like 7 322 IPR036457 -
Lsi11g01535 419 MobiDBLite consensus disorder prediction 331 372 - -
Lsi11g01535 419 ProSiteProfiles PPM-type phosphatase domain profile. 14 320 IPR001932 -
Lsi11g01535 419 Gene3D - 7 322 IPR036457 -
Lsi11g01535 419 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 7 407 - -
Lsi11g01535 419 Pfam Protein phosphatase 2C 115 297 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00963 Lsi-Chr11:15029915 Lsi11g01535 Lsi-Chr11:23687834 3.63E-147 dispersed
Lsi06g00689 Lsi-Chr6:10884609 Lsi11g01535 Lsi-Chr11:23687834 7.45E-137 transposed
Lsi07g01391 Lsi-Chr7:20240767 Lsi11g01535 Lsi-Chr11:23687834 6.13E-140 transposed
Lsi08g00355 Lsi-Chr8:9742854 Lsi11g01535 Lsi-Chr11:23687834 1.21E-139 transposed
Lsi10g00876 Lsi-Chr10:12985503 Lsi11g01535 Lsi-Chr11:23687834 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01535 - - csv:101204594 819.69