Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01541 ATGGCGGAGGAGGTTAAGAAAACAGGGAAATTGAAGATGGTTATCGATGACAAAACACAGAAATTTCCAGAGAAGAAGATTGAAAAAGGCAAAGATGTTGCAGCAGTTAGCTTGGAGAGGCAACAATGGAAGCCGGTTTTAGATGATGCTTTCTTGTCTAGAAGACCTCTCAAGAAAATCTGCAGTTCAGATTTCCATAACCCATTTCTTCATTCCCCTGTTTCTCTTTCTCCCCCTTCTTCAAAAATCCAATTTCCTTTCGATTTCGAAGCTTCTCAACAATCAACAATAACAACAACAACAACAACAACAACAACCCAATTCAATTCTCAATACCCAATTTCTTCCTCCTCTTCTTCTTCCTCTCCCTTTACGACGTTTGGGTCACCAGAGCAACAGATGATTTCTTTTAGTTCCAATCAACAACAGGGGTTTGGCTATCCGCCATACTTCCTCGGTGGCGACCCGGTGGCATCGCAGCAGAGACTTTTCAAGTACTGGAGCGATGCTTTTCATTTGAGTCCAAGAGGAAGAGCTATGATGATGAGCAGATTAGGCCCAGATGGAGGCAATTTGTTTCGACCGCCATTGCAGCCCATAAGTGCCACCAAGCTTTACAGAGGAGTTAGACAGCGGCATTGGGGGAAATGGGTGGCTGAAATTCGTCTCCCTCGTAATCGAACTCGTCTTTGGCTCGGAACTTTCGACACCGCCGAAGATGCCGCCATGGCTTACGATCGAGAAGCTTTCAAATTACGAGGTGAAAATGCTCGACTCAATTTCCCTGATCGTTTCCTCAACAAAGATAACACAAAAACAGAGCCCGAAACAGAGCAAGCAGTTCCAATAACAGAGGAGGCTCATCCAGAAAGCGTTGTAGTTCTTCCGCCGCCAGAGGAAGAAAAACCGGATGAACACTTGACGGAGAGCGGCAGCTGCGCGTCGGAACCGCCGGAGATGATTTGGGGAGAAATGGAAGAGGCTTGGTTGAATGCAATTCCGGCCAGTTGGGGTCCGGGAAGCTCTGTTTGGGATCATTTAGACCCAACAAACAATTTCGTTCTTCAATCACAAATCCCATTTGGTTCTTCAAATCAGCAACAGATGAACGATTTCGATGATAATCAGAACAAGATTGAAAATTCTGAGTCGACTTCGTCTTCATCTTCCTCTGCTCCAATGAAGCTTTTCTTATGGAAAGATCAAGATTGA 1212 45.13 MAEEVKKTGKLKMVIDDKTQKFPEKKIEKGKDVAAVSLERQQWKPVLDDAFLSRRPLKKICSSDFHNPFLHSPVSLSPPSSKIQFPFDFEASQQSTITTTTTTTTTQFNSQYPISSSSSSSSPFTTFGSPEQQMISFSSNQQQGFGYPPYFLGGDPVASQQRLFKYWSDAFHLSPRGRAMMMSRLGPDGGNLFRPPLQPISATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPDRFLNKDNTKTEPETEQAVPITEEAHPESVVVLPPPEEEKPDEHLTESGSCASEPPEMIWGEMEEAWLNAIPASWGPGSSVWDHLDPTNNFVLQSQIPFGSSNQQQMNDFDDNQNKIENSESTSSSSSSAPMKLFLWKDQD 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23747887 23749098 + Lsi11G015410.1 Lsi11g01541 674708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01541 403 MobiDBLite consensus disorder prediction 359 403 - -
Lsi11g01541 403 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 6 289 - -
Lsi11g01541 403 Pfam AP2 domain 206 254 IPR001471 GO:0003700|GO:0006355
Lsi11g01541 403 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 301 400 - -
Lsi11g01541 403 MobiDBLite consensus disorder prediction 359 395 - -
Lsi11g01541 403 Gene3D AP2/ERF domain 205 263 IPR036955 GO:0003700|GO:0006355
Lsi11g01541 403 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 6 289 - -
Lsi11g01541 403 MobiDBLite consensus disorder prediction 295 309 - -
Lsi11g01541 403 ProSiteProfiles AP2/ERF domain profile. 205 262 IPR001471 GO:0003700|GO:0006355
Lsi11g01541 403 SUPERFAMILY DNA-binding domain 205 264 IPR016177 GO:0003677
Lsi11g01541 403 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 301 400 - -
Lsi11g01541 403 SMART rav1_2 205 268 IPR001471 GO:0003700|GO:0006355
Lsi11g01541 403 MobiDBLite consensus disorder prediction 284 317 - -
Lsi11g01541 403 PRINTS Ethylene responsive element binding protein signature 228 244 IPR001471 GO:0003700|GO:0006355
Lsi11g01541 403 PRINTS Ethylene responsive element binding protein signature 206 217 IPR001471 GO:0003700|GO:0006355
Lsi11g01541 403 CDD AP2 204 263 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01142 Lsi-Chr9:18328018 Lsi11g01541 Lsi-Chr11:23747887 4.15E-29 dispersed
Lsi11g01541 Lsi-Chr11:23747887 Lsi03g01092 Lsi-Chr3:20857349 1.85E-22 dispersed
Lsi10g00883 Lsi-Chr10:13136227 Lsi11g01541 Lsi-Chr11:23747887 3.35E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26223 PF00847 AP2 2.60E-13 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01541 - - bhj:120078099 696.812