Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01541 | ATGGCGGAGGAGGTTAAGAAAACAGGGAAATTGAAGATGGTTATCGATGACAAAACACAGAAATTTCCAGAGAAGAAGATTGAAAAAGGCAAAGATGTTGCAGCAGTTAGCTTGGAGAGGCAACAATGGAAGCCGGTTTTAGATGATGCTTTCTTGTCTAGAAGACCTCTCAAGAAAATCTGCAGTTCAGATTTCCATAACCCATTTCTTCATTCCCCTGTTTCTCTTTCTCCCCCTTCTTCAAAAATCCAATTTCCTTTCGATTTCGAAGCTTCTCAACAATCAACAATAACAACAACAACAACAACAACAACAACCCAATTCAATTCTCAATACCCAATTTCTTCCTCCTCTTCTTCTTCCTCTCCCTTTACGACGTTTGGGTCACCAGAGCAACAGATGATTTCTTTTAGTTCCAATCAACAACAGGGGTTTGGCTATCCGCCATACTTCCTCGGTGGCGACCCGGTGGCATCGCAGCAGAGACTTTTCAAGTACTGGAGCGATGCTTTTCATTTGAGTCCAAGAGGAAGAGCTATGATGATGAGCAGATTAGGCCCAGATGGAGGCAATTTGTTTCGACCGCCATTGCAGCCCATAAGTGCCACCAAGCTTTACAGAGGAGTTAGACAGCGGCATTGGGGGAAATGGGTGGCTGAAATTCGTCTCCCTCGTAATCGAACTCGTCTTTGGCTCGGAACTTTCGACACCGCCGAAGATGCCGCCATGGCTTACGATCGAGAAGCTTTCAAATTACGAGGTGAAAATGCTCGACTCAATTTCCCTGATCGTTTCCTCAACAAAGATAACACAAAAACAGAGCCCGAAACAGAGCAAGCAGTTCCAATAACAGAGGAGGCTCATCCAGAAAGCGTTGTAGTTCTTCCGCCGCCAGAGGAAGAAAAACCGGATGAACACTTGACGGAGAGCGGCAGCTGCGCGTCGGAACCGCCGGAGATGATTTGGGGAGAAATGGAAGAGGCTTGGTTGAATGCAATTCCGGCCAGTTGGGGTCCGGGAAGCTCTGTTTGGGATCATTTAGACCCAACAAACAATTTCGTTCTTCAATCACAAATCCCATTTGGTTCTTCAAATCAGCAACAGATGAACGATTTCGATGATAATCAGAACAAGATTGAAAATTCTGAGTCGACTTCGTCTTCATCTTCCTCTGCTCCAATGAAGCTTTTCTTATGGAAAGATCAAGATTGA | 1212 | 45.13 | MAEEVKKTGKLKMVIDDKTQKFPEKKIEKGKDVAAVSLERQQWKPVLDDAFLSRRPLKKICSSDFHNPFLHSPVSLSPPSSKIQFPFDFEASQQSTITTTTTTTTTQFNSQYPISSSSSSSSPFTTFGSPEQQMISFSSNQQQGFGYPPYFLGGDPVASQQRLFKYWSDAFHLSPRGRAMMMSRLGPDGGNLFRPPLQPISATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPDRFLNKDNTKTEPETEQAVPITEEAHPESVVVLPPPEEEKPDEHLTESGSCASEPPEMIWGEMEEAWLNAIPASWGPGSSVWDHLDPTNNFVLQSQIPFGSSNQQQMNDFDDNQNKIENSESTSSSSSSAPMKLFLWKDQD | 403 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 23747887 | 23749098 | + | Lsi11G015410.1 | Lsi11g01541 | 674708 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01541 | 403 | MobiDBLite | consensus disorder prediction | 359 | 403 | - | - | |
Lsi11g01541 | 403 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 | 6 | 289 | - | - | |
Lsi11g01541 | 403 | Pfam | AP2 domain | 206 | 254 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g01541 | 403 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 | 301 | 400 | - | - | |
Lsi11g01541 | 403 | MobiDBLite | consensus disorder prediction | 359 | 395 | - | - | |
Lsi11g01541 | 403 | Gene3D | AP2/ERF domain | 205 | 263 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi11g01541 | 403 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 6 | 289 | - | - | |
Lsi11g01541 | 403 | MobiDBLite | consensus disorder prediction | 295 | 309 | - | - | |
Lsi11g01541 | 403 | ProSiteProfiles | AP2/ERF domain profile. | 205 | 262 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g01541 | 403 | SUPERFAMILY | DNA-binding domain | 205 | 264 | IPR016177 | GO:0003677 | |
Lsi11g01541 | 403 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 301 | 400 | - | - | |
Lsi11g01541 | 403 | SMART | rav1_2 | 205 | 268 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g01541 | 403 | MobiDBLite | consensus disorder prediction | 284 | 317 | - | - | |
Lsi11g01541 | 403 | PRINTS | Ethylene responsive element binding protein signature | 228 | 244 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g01541 | 403 | PRINTS | Ethylene responsive element binding protein signature | 206 | 217 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g01541 | 403 | CDD | AP2 | 204 | 263 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi09g01142 | Lsi-Chr9:18328018 | Lsi11g01541 | Lsi-Chr11:23747887 | 4.15E-29 | dispersed | |
Lsi11g01541 | Lsi-Chr11:23747887 | Lsi03g01092 | Lsi-Chr3:20857349 | 1.85E-22 | dispersed | |
Lsi10g00883 | Lsi-Chr10:13136227 | Lsi11g01541 | Lsi-Chr11:23747887 | 3.35E-76 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26223 | PF00847 | AP2 | 2.60E-13 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01541 | - | - | bhj:120078099 | 696.812 |