Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01543 ATGCAGCTCCGCCGTGGGTACTTGTGGAATGTGATAATGTTGGTGAATTTGGTAGTGGTGGGGAAGTTTCTTCTCGTTGAATCAGCTCAGCTTCCAAACCGCACGTTAGCTTCCCATTGGCTCCCCGCCACCGCCACCTGGTACGGCAGCCCTGAAGGCGACGGCAGCGACGACGTGAAGCCATTTAAAGCAAGAGTAGGGGCAGTGAGTCCAATCCTATTCAAAGACGGTGAAGGGTGTGGTGCATGTTACAAAGTTCGGTGCTTAGATCGAGCCATATGCACCAAACGAGCTGTTACCATAATAGTAACCGACGAATGTCCTGGTGGGTACTGTACAAGTGGCCGCACCCACTTCGACCTAAGTGGTGCCGCCTTCGGACGCATGGCGGTGGCAGGTGCCGGTAGCCGTCTCCGGGACAGAGGTGAATTGACGGTTGTGTACAGACGGACACCGTGTAAATATCGAGGAAAGAATATAGCGTTCCATGTGAATGAAGGTTCTACGGATCATTGGCTTTCGCTTTTGGTGGAGTTCGAGGATGGAGATGGAGATATTGGTTCTATGCAAATCAAACAAGAGTGGATGGAAATGGCACATGTGTGGGGTGCAACATGGTGTATAAATGGAGGGCCTTTAGAGGGTCCATTTTCAGTGAAGTTAACAACATTATCCACAGCCAAAACTCTCTCAGCCAGAGATGTTATCCCAAGGAATTGGTCTCCAAAGGCAACTTACACTTCTCGCTTGAACTTCTCCTAA 762 50.13 MQLRRGYLWNVIMLVNLVVVGKFLLVESAQLPNRTLASHWLPATATWYGSPEGDGSDDVKPFKARVGAVSPILFKDGEGCGACYKVRCLDRAICTKRAVTIIVTDECPGGYCTSGRTHFDLSGAAFGRMAVAGAGSRLRDRGELTVVYRRTPCKYRGKNIAFHVNEGSTDHWLSLLVEFEDGDGDIGSMQIKQEWMEMAHVWGATWCINGGPLEGPFSVKLTTLSTAKTLSARDVIPRNWSPKATYTSRLNFS 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23762422 23765702 - Lsi11G015430.1 Lsi11g01543 674710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01543 253 Pfam Lytic transglycolase 68 135 IPR009009 -
Lsi11g01543 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 248 IPR007117 -
Lsi11g01543 253 SMART dpbb_1 66 148 IPR007112 -
Lsi11g01543 253 PANTHER EXPANSIN-B17 33 252 - -
Lsi11g01543 253 Gene3D - 155 253 IPR036749 -
Lsi11g01543 253 SUPERFAMILY PHL pollen allergen 158 248 IPR036749 -
Lsi11g01543 253 PRINTS Major pollen allergen Lol pI signature 162 177 IPR005795 GO:0005576|GO:0019953
Lsi11g01543 253 PRINTS Major pollen allergen Lol pI signature 178 193 IPR005795 GO:0005576|GO:0019953
Lsi11g01543 253 PRINTS Major pollen allergen Lol pI signature 68 79 IPR005795 GO:0005576|GO:0019953
Lsi11g01543 253 PRINTS Major pollen allergen Lol pI signature 108 123 IPR005795 GO:0005576|GO:0019953
Lsi11g01543 253 PRINTS Major pollen allergen Lol pI signature 130 145 IPR005795 GO:0005576|GO:0019953
Lsi11g01543 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 158 IPR007112 -
Lsi11g01543 253 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Lsi11g01543 253 PANTHER EXPANSIN-B3 33 252 - -
Lsi11g01543 253 Gene3D - 25 154 IPR036908 -
Lsi11g01543 253 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Lsi11g01543 253 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Lsi11g01543 253 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Lsi11g01543 253 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Lsi11g01543 253 SUPERFAMILY Barwin-like endoglucanases 32 157 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02205 Lsi-Chr5:28622324 Lsi11g01543 Lsi-Chr11:23762422 7.48E-70 dispersed
Lsi11g01543 Lsi-Chr11:23762422 Lsi11g01258 Lsi-Chr11:21208382 6.42E-27 dispersed
Lsi10g00889 Lsi-Chr10:13169875 Lsi11g01543 Lsi-Chr11:23762422 1.73E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01543 K20628 - csv:101205324 468.388