Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01558 ATGGTTCGTTGTGAAAGTCTTCAACAAATCTCAAAGGATATGGAGGAATCTCTTCTAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGTAGCAGTAGCTCCAGCTCTCGACGTCAGATTCCGCATGTCAGGTTCAGGCGCCGCTCCGACGCCATCGCTTATGGCTCTGCCTACCAAAGAGCAGCTGCTCTTGTGGATCTGGCTGAAGATGGCATTGGTATACCCGAGAAAATTCTTGATCAGTCAAACTTTCAGAGTGCTGCAAAGCTCTACTTCGTTTTTATTAAATTTGATTTGATTTGGTCCTTAAATTTCTTTGCGCTGATAGTCCTAAATTTCTTTGAGAAACCCTTGTGGTGCTCCAAATACGATACACATTCTTGTAACGACAGGGAGTATTTCTTTCTTGGGCAGTTGCCATACTTAACAGCTGTTGAATCTCTTATATATGAGGCTGTGACTCTCATAATACTCATGATACACACTTTTTTCCCAATTTCATATGAAGGTGCGCAACTTTATTGGACAAATCTCTTGAATCAGTTGAAGGTCATTTGCATAATTATTTTGGTTGCTGATTTTCTCGTTTATACCCTATATTTGTCGCCCGTGGCCATTGATTACCTTCCATTCAGAGTTGCACCATATATCAGAGTTGTCTTTTTCATCATGAATATCAGGCATCTACGGGAGAGCATCATCATCCTGGCTGGAATGCTTGGCACATACTTGAATGTCGTGGCTCTAGGGTTTTTGTTTCTTCTGTTTTCCAGCTGGTTGGCATATGTTATTTTTGAGGATACACAGCAGGGGAAATTAATATTTACTTCTTTTGGAGCCACATTATATCAAATGTTTATTTTGTTCACAACATCCAATAATCCGAATGTTTGGATACCTGCCTACAAGGCGTCTCGTTGGTATTGCCTCTTTTTTGTGCTTTACGTGCTGTTGGGTGTTTACTTCGTTACAAACTTGATTCTTGCTGTTGTCTACGATAGCTTTAAGAGTCAGCTTGCTAAACAAATTTCTGAGATGGATCACTTGAGGAAAAGTATATTGGCCAAAGCATTTAGTCTCATGGATACTAATAATGTTGGGTATATCAATAAAGAGCAGTGCCTCATGCTTCTTGAAGAACTTAATAGATACAGGACATTGCCGAAAATATCAAGGGATGATTATGAGTTAATATTTGATGAGCTGGATGACAGTCGTGATTTTAAGATTAATATGAATGAGTTCGATGATCTTTGCAATGCTATAGCCTTGAAGTTCCAGAAGGAGGACATTCCTTCATGGTTTGAAGGGTATCCTTCGATCTACCATTCAGTTTTTTCAAAAAAGTTGAAAGCATTTGTGCGGAGCCCCAAATTTGGATATGCTGTATCTTTTATCCTCATACTGAATCTGGTTGCTGTTATTATTGAAACAACACTTGATATAGAAAACAATGTGGGTCAGAAAGCATGGCAAGAACTCGAGTTTGTATTTGGTTGGATATATGTAGTTGAAATGGCTCTAAAAATCTACGCATATGGGTTTTTGAATTATTGGAGAGATGGCCAAAATCAATTTGATTTCCTTGTCACGTGGATTATAGTGATTGGAGAAACTATAACTTTTGTGGCACCTAGTGGATTGACTTTTCTTTCAAATGGAGAATGGATTCGCTACCTTCTGATAGCAAGAATGTTACGCCTCATAAGGCTCCTAATGCATGTCCGGCAATATCGAGCATTTCTTGCTACCTTCTTAACTCTCATCCCTAGTTTGATGCCGTATCTGGGGACTATTTTCTGTGTCCTCTGTCTTTATTGCATTCTTGGTGTGCAGGTCTTTGGAGGCATTGTCAATGCCGGAAATCCCACTTTGTCTAAGACTGATCTGGACGATGATGAGTATCCTAAGATTATTCTCGTCAATTCAATTCCTCACTGTTATGATGAATCCATGCATGTTGTAGCTTTTGTCCTGGAGGCATTCTTTGCTGAATTGGATATTGAATCTTCAGAAAATGGTGAAGAACAGGATCAGGACGGAGATAGTAGAAAGGATCGTCGGCGTTTCGTTGGCACTAAAACTCGGAGCCGCAAAGTTGACATTCTTCTCCATCATATGTTGAGTGCAGAATTGGACGAAAAGGATTCCGATTAG 2154 39.97 MVRCESLQQISKDMEESLLGGGGGGGGESSSSSSSRRQIPHVRFRRRSDAIAYGSAYQRAAALVDLAEDGIGIPEKILDQSNFQSAAKLYFVFIKFDLIWSLNFFALIVLNFFEKPLWCSKYDTHSCNDREYFFLGQLPYLTAVESLIYEAVTLIILMIHTFFPISYEGAQLYWTNLLNQLKVICIIILVADFLVYTLYLSPVAIDYLPFRVAPYIRVVFFIMNIRHLRESIIILAGMLGTYLNVVALGFLFLLFSSWLAYVIFEDTQQGKLIFTSFGATLYQMFILFTTSNNPNVWIPAYKASRWYCLFFVLYVLLGVYFVTNLILAVVYDSFKSQLAKQISEMDHLRKSILAKAFSLMDTNNVGYINKEQCLMLLEELNRYRTLPKISRDDYELIFDELDDSRDFKINMNEFDDLCNAIALKFQKEDIPSWFEGYPSIYHSVFSKKLKAFVRSPKFGYAVSFILILNLVAVIIETTLDIENNVGQKAWQELEFVFGWIYVVEMALKIYAYGFLNYWRDGQNQFDFLVTWIIVIGETITFVAPSGLTFLSNGEWIRYLLIARMLRLIRLLMHVRQYRAFLATFLTLIPSLMPYLGTIFCVLCLYCILGVQVFGGIVNAGNPTLSKTDLDDDEYPKIILVNSIPHCYDESMHVVAFVLEAFFAELDIESSENGEEQDQDGDSRKDRRRFVGTKTRSRKVDILLHHMLSAELDEKDSD 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23885446 23913177 + Lsi11G015580.1 Lsi11g01558 674725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01558 717 MobiDBLite consensus disorder prediction 676 690 - -
Lsi11g01558 717 Pfam Ion transport protein 458 622 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi11g01558 717 Pfam Ion transport protein 153 337 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi11g01558 717 Gene3D - 227 335 - -
Lsi11g01558 717 Gene3D - 336 419 - -
Lsi11g01558 717 CDD EFh 353 417 IPR002048 GO:0005509
Lsi11g01558 717 Gene3D - 447 580 IPR027359 -
Lsi11g01558 717 SUPERFAMILY Voltage-gated potassium channels 455 614 - -
Lsi11g01558 717 SMART efh_1 352 380 IPR002048 GO:0005509
Lsi11g01558 717 SMART efh_1 393 421 IPR002048 GO:0005509
Lsi11g01558 717 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 653 715 IPR044581 GO:0005245
Lsi11g01558 717 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 30 634 IPR044581 GO:0005245
Lsi11g01558 717 SUPERFAMILY EF-hand 344 435 IPR011992 -
Lsi11g01558 717 MobiDBLite consensus disorder prediction 671 690 - -
Lsi11g01558 717 MobiDBLite consensus disorder prediction 16 41 - -
Lsi11g01558 717 ProSiteProfiles EF-hand calcium-binding domain profile. 348 383 IPR002048 GO:0005509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01558 K16900 - csv:101206980 1233.01