Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01564 ATGTCTTCTTCTTCACCCACTCTCTTCTGCGCCGTAATTTCGATTCTAATCTCCATTTCCATCTCAATCTCAGCTACAGAGTTTGTCTTCAACACCAATTTCACTTCCTCCAATACTTTGCTCTTCGGCAACGCCACCATTGATTCTTCTGTTCTTATTCTCACTAGAGATTCCCCTTTCACCATCGGTCGTGCCCTTTACCCTTTCAAAATTCCCATTCATTTCTCCAATTCTTCATTTTCCTTTGCAACTTCCTTCATTTTCTCTGTTGCCCCTCAACCAAATCTTCTCCCTGGCCATGGATTTGTTTTTCTCTTCACACCCTTTACTGGAATCAACGGCACCAGCTCGGCTCAGAATTTGGGGCTTTTCAATTTCACCAATAATGGTAGCCCCAATAACCATGTTTTCGCTGTTGAGTTCGATTCGTTCCAAAATCTGGAGTTCAATGACACCAATGATAACCATGTCGGCGTGGATTTGAATTCTCTTGAATCTACTGCTTCCTCTGCAGCAGGGTTTTGGAGTGGACCAGATGATAGAGAATTCAAGGAATTGAAGATCAATAATGGAGAAACTTATCAGGTTTGGATTGAATGTCTTGATTCTTTAGTTAATATTACAATGGCTGAAGTGGGAATGAAAAGGCCTAGAAAACCATTGATATCTCTGTCTGTTGATTTCTCTGGATTGCTTTTGGATGAGATGTATGTAGGATTTACAGCAGCCACAGGGCAATTAGTTCAAAGCCATAAGATATTATCTTGGAGTTTTAGTACCTCTAACTTGTCTATTGGTGATGCTTTACTGATAACAGATTTACCATCTTTTGTTCCTCAAAAGGAGGGCTCCATTTTTGACTCATTAGCTTTCATATTGGGGATAACTCTGGGGGGTGTTGGACTTGTGTTTATCTGTAGTTTTGTAATCTATGTTGTTGTAATTATCAGAAGGAGGGGAAGAAAGAAACCAAACGATGATGAAATTGAAGATTGGGAGTTAGAATATTGGCCACATCGGTTTGCTTATGAAGATGTTTATGAAGCAACTGATGGGTTCTCAGAAGCCAATGTAATTGGGTTTGGGCGAAATGGGAAGGTCTATAAAGGGACATTAGGGAGATCAAAAGTTGCTGTGAAGAGAATTTCTGTTGTAGCTGAGAGTGGAATGAGGGAGTTTGTAGCTGAAATTTCAAGCTTAGGAAGATTAAAGCATAGAAATCTAGTTAAGCTTATAGGATGGTGTAAGAAGGAGAAAGGAAGCTTAATCTTAATGTATGATTACATGGAAAATGGAAGCTTAGACAAGAAACTATTTGAGTGTGATGAGAATGAAATGCTGAGTTGGGAGAAAAGGATGAAAGTTTTGAGAGATGTAGCCACAGGGTTGCTATATCTTCACCAAGGTTGGGATTCCAAGGTTCTGCATAGAGATATAAAAGCAAACAACGTGCTACTCGACAAGGACATGAACGCAAGGTTAGGAGACTTCGGGTTGGCTCGCATGCAACCCCATGAACGAACAACAGACACAACTCGAGTAATGGGAACTGTCGGGTATATGGCACCGGAGGTAGTTCGAACAGGGCGAGTATCGGCACAAGCGGATGTTTTCGGGTTCGGAGTGTTGGTTTTGGAGATGGTTTGTGGGAGGAGAGCAGTAGAAGAAGGGAAGCCATGGTTGATAGATTGGATTAGAGGATTAATGGAGAGGAATGAGATTGGATTAGCAGTTGATGAGAGATTGAAAGTTGAGGATATAAGTGGGAATGAGATTGATGAAATGGAGAGAATGGTTTGTTTGGGGTTATTATGTGCACATACCGAAGCTGGTGCAAGGCCAACAATGCAACAAGTTGTGAATATTTTGTGTGAGAGAAATGGAAATGGTTCAAATGATGGATTGTTAAATAGATTAAGATCAACAAGAATACTGTCTGAGATTAACCAAGGCAACAATTTTCAGCAAAATCATCCAACGTTTGAAGAAATCAAAACATCTTCATCTTCAACATCACTCATTGAATCAGATCTTTTAAGCATTGGCCGCTAG 2052 40.4 MSSSSPTLFCAVISILISISISISATEFVFNTNFTSSNTLLFGNATIDSSVLILTRDSPFTIGRALYPFKIPIHFSNSSFSFATSFIFSVAPQPNLLPGHGFVFLFTPFTGINGTSSAQNLGLFNFTNNGSPNNHVFAVEFDSFQNLEFNDTNDNHVGVDLNSLESTASSAAGFWSGPDDREFKELKINNGETYQVWIECLDSLVNITMAEVGMKRPRKPLISLSVDFSGLLLDEMYVGFTAATGQLVQSHKILSWSFSTSNLSIGDALLITDLPSFVPQKEGSIFDSLAFILGITLGGVGLVFICSFVIYVVVIIRRRGRKKPNDDEIEDWELEYWPHRFAYEDVYEATDGFSEANVIGFGRNGKVYKGTLGRSKVAVKRISVVAESGMREFVAEISSLGRLKHRNLVKLIGWCKKEKGSLILMYDYMENGSLDKKLFECDENEMLSWEKRMKVLRDVATGLLYLHQGWDSKVLHRDIKANNVLLDKDMNARLGDFGLARMQPHERTTDTTRVMGTVGYMAPEVVRTGRVSAQADVFGFGVLVLEMVCGRRAVEEGKPWLIDWIRGLMERNEIGLAVDERLKVEDISGNEIDEMERMVCLGLLCAHTEAGARPTMQQVVNILCERNGNGSNDGLLNRLRSTRILSEINQGNNFQQNHPTFEEIKTSSSSTSLIESDLLSIGR 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23925398 23927449 + Lsi11G015640.1 Lsi11g01564 674731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01564 683 SMART serkin_6 353 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01564 683 PANTHER - 15 674 - -
Lsi11g01564 683 Gene3D Transferase(Phosphotransferase) domain 1 429 635 - -
Lsi11g01564 683 Pfam Protein kinase domain 354 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01564 683 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 15 674 - -
Lsi11g01564 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 263 IPR013320 -
Lsi11g01564 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Lsi11g01564 683 ProSiteProfiles Protein kinase domain profile. 353 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01564 683 Gene3D - 24 268 - -
Lsi11g01564 683 Gene3D Phosphorylase Kinase; domain 1 338 428 - -
Lsi11g01564 683 ProSitePatterns Protein kinases ATP-binding region signature. 359 380 IPR017441 GO:0005524
Lsi11g01564 683 SUPERFAMILY Protein kinase-like (PK-like) 328 623 IPR011009 -
Lsi11g01564 683 CDD lectin_legume_LecRK_Arcelin_ConA 26 261 IPR001220 GO:0030246
Lsi11g01564 683 Pfam Legume lectin domain 26 262 IPR001220 GO:0030246
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00756 Lsi-Chr2:6947359 Lsi11g01564 Lsi-Chr11:23925398 0 dispersed
Lsi08g00117 Lsi-Chr8:2544376 Lsi11g01564 Lsi-Chr11:23925398 5.74E-146 dispersed
Lsi11g01564 Lsi-Chr11:23925398 Lsi03g02130 Lsi-Chr3:32463610 1.96E-153 dispersed
Lsi11g01564 Lsi-Chr11:23925398 Lsi03g02126 Lsi-Chr3:32450062 4.47E-155 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84056 PF00069 Pkinase 5.10E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01564 - - csv:101216388 1216.45