Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01569 ATGGCTTCCACTAAAGAACGCGAGAACTTCGTTTACATCGCTAAGCTCGCCGAGCAGGCCGAGCGTTATGATGAAATGGTGGATGCAATGAAGAATGTTGCAAAGCTTGATGTCGAATTGACAGTTGAGGAAAGAAACTTACTTTCTGTTGGGTACAAGAATGTGGTTGGTGCACGGCGAGCCTCATGGAGGATCTTATCGTCAATAGAGCAGAAAGAAGAGGCTAAAGGAAATGAAACAAATGCTAAACGCATCAAAGAATACAGACAAAAGGTTGAATCAGAGCTCTCTGGTATTTGTAATGATATCATGACAGTGATTGACGAGCATCTAATTCCCTCGGCTTCAGCTGGGGAATCAACAGTATTCTACTATAAGATGAAAGGAGACTATTATCGTTACCTTGCAGAATTTAAATCTGGTAATGAGAAGAAAGATGCAGCTGATCAATCGATGAAAGCATATGAGGCTGCAACCAGCTCAGCCGAATCTGAGTTACCCCCTACACATCCTATCCGCTTGGGGTTGGCATTAAATTTCTCTGTCTTCTACTATGAAATCTTGAATTCACCTGAAAGGGCCTGCCACCTTGCAAAGCAAGCTTTTGATGAAGCCATTTCCGAACTTGACACCCTGAATGAAGAGTCATACAAAGATAGCACCCTAATCATGCAGCTTCTTAGGGACAACCTTACATTATGGACTTCTGACATCCCAGAAGATGGAGATGATGCCCAAAAGATCAATGGCACTACCAAGGTTTCTGGTGGTGACGATGCCGAGGTGAGTAGCTCAAACCGTTGGTTGCAGTTAGTCAATCACGTTTGA 828 43.48 MASTKERENFVYIAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEEAKGNETNAKRIKEYRQKVESELSGICNDIMTVIDEHLIPSASAGESTVFYYKMKGDYYRYLAEFKSGNEKKDAADQSMKAYEAATSSAESELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGDDAQKINGTTKVSGGDDAEVSSSNRWLQLVNHV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23995462 23998460 - Lsi11G015690.1 Lsi11g01569 674736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01569 275 Coils Coil 13 33 - -
Lsi11g01569 275 SMART 1433_4 7 248 IPR023410 -
Lsi11g01569 275 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Lsi11g01569 275 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Lsi11g01569 275 PANTHER 14-3-3 DOMAIN-CONTAINING PROTEIN-RELATED 4 246 - -
Lsi11g01569 275 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Lsi11g01569 275 PANTHER 14-3-3 PROTEIN 4 246 IPR000308 -
Lsi11g01569 275 Coils Coil 195 215 - -
Lsi11g01569 275 Pfam 14-3-3 protein 14 235 IPR023410 -
Lsi11g01569 275 Gene3D - 1 249 IPR036815 -
Lsi11g01569 275 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Lsi11g01569 275 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Lsi11g01569 275 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Lsi11g01569 275 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Lsi11g01569 275 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Lsi11g01569 275 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Lsi11g01569 275 PIRSF 14-3-3 1 247 IPR000308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02235 Lsi-Chr4:29388901 Lsi11g01569 Lsi-Chr11:23995462 7.29E-133 dispersed
Lsi07g00987 Lsi-Chr7:13570780 Lsi11g01569 Lsi-Chr11:23995462 4.10E-126 dispersed
Lsi08g00896 Lsi-Chr8:17327349 Lsi11g01569 Lsi-Chr11:23995462 5.15E-125 dispersed
Lsi08g00980 Lsi-Chr8:18276685 Lsi11g01569 Lsi-Chr11:23995462 4.79E-126 dispersed
Lsi08g01039 Lsi-Chr8:18981438 Lsi11g01569 Lsi-Chr11:23995462 5.26E-86 dispersed
Lsi11g01569 Lsi-Chr11:23995462 Lsi08g00966 Lsi-Chr8:18146289 2.71E-146 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01569 K06630 - csv:101208446 498.819