Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01574 ATGGCGTCCATTATTTCTCATCTTTTCATTGTTCTTTCCCTTTTAGCTTTCTCAACCAATGCTCAACTCTCATCTAGCTTCTACTCAAAAACCTGTCCCAGACTCGAATCAATTGTTCGTGCTGGTATGACCAAAGCTGTTAATAAAGAAAAACGTATCGGAGCTTCCATCCTTCGTTTGTTCTTCCACGACTGCTTCGTAAATGGTTGTGATGGTTCTATATTACTTGATGATACTCCAACATTTACGGGTGAAAAAAATGCATTTCCAAACCGAAACTCAGCTAGAGGGTTCGAAGTAATTGATGACATTAAAACTCAAGTCGAAGCTGCTTGCAATGTCACTGTTTCCTGTGCTGATATTCTTGCTCTTGCCACTCGTGATGGGGTCTTTCTGCTTGGAGGGCCAAATTGGATTGTACCACTCGGTCGAAGGGATTCGAGAACAGCGAGCGAGAGTGGAGCGAACAACAACCTTCCAGGACCAAGCTCCGACCTCTCGACACTCATCTCATTATTCGCCGCTCAAGGCCTCAACACCCGAGAAATGACAGCCCTCTCCGGTGCTCACACCATAGGCAATGGCCAATGTCAATTCTTCCGAACTCGCATCTACAACGAAACCAACATCGATCCCACCTTTGCGGCCCAGCGGCGAGCCAACTGTCCGTTCAATGGCGGCGACGCCAACTTGGCCCCTCTTGACTCAACCAACACTTTGTTTGACAACAAATATTACGTAGACCTAACTAATAAGCGTGGCCTGTTTCATTCGGACCAACAACTCTTCAACGGCGGTTCACAAGATGCGTTGGTTCGAACCTATAGTACAAATGTCAACACCTTTAAATCGGATTTTGTAAATGCGATGATCAAGATGGGGAATCTCGGTCCTGCGAGTGGAACCATCACCGAGATTAGAAAAAATTGCAGGGTGGTGAATTAA 945 45.93 MASIISHLFIVLSLLAFSTNAQLSSSFYSKTCPRLESIVRAGMTKAVNKEKRIGASILRLFFHDCFVNGCDGSILLDDTPTFTGEKNAFPNRNSARGFEVIDDIKTQVEAACNVTVSCADILALATRDGVFLLGGPNWIVPLGRRDSRTASESGANNNLPGPSSDLSTLISLFAAQGLNTREMTALSGAHTIGNGQCQFFRTRIYNETNIDPTFAAQRRANCPFNGGDANLAPLDSTNTLFDNKYYVDLTNKRGLFHSDQQLFNGGSQDALVRTYSTNVNTFKSDFVNAMIKMGNLGPASGTITEIRKNCRVVN 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24075599 24079871 + Lsi11G015740.1 Lsi11g01574 674741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01574 314 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 PRINTS Haem peroxidase superfamily signature 234 249 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 Gene3D - 27 311 - -
Lsi11g01574 314 Pfam Peroxidase 39 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 CDD secretory_peroxidase 22 313 IPR033905 GO:0004601|GO:0042744
Lsi11g01574 314 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 PRINTS Plant peroxidase signature 248 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 PRINTS Plant peroxidase signature 232 247 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 PRINTS Plant peroxidase signature 288 301 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 SUPERFAMILY Heme-dependent peroxidases 22 314 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 PANTHER PEROXIDASE 15 314 - -
Lsi11g01574 314 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Lsi11g01574 314 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601
Lsi11g01574 314 ProSiteProfiles Plant heme peroxidase family profile. 22 314 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 PANTHER PEROXIDASE 72-RELATED 15 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi11g01574 314 Gene3D Peroxidase, domain 2 160 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01471 Lsi-Chr10:18840896 Lsi11g01574 Lsi-Chr11:24075599 4.29E-91 dispersed
Lsi11g00024 Lsi-Chr11:252005 Lsi11g01574 Lsi-Chr11:24075599 2.42E-118 dispersed
Lsi11g01574 Lsi-Chr11:24075599 Lsi01g00641 Lsi-Chr1:5166953 5.28E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01574 K00430 - csv:101208932 569.311