Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01586 ATGTTCCATCCCAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCCGTCACTCAGCTCGGAGGCCCTGATAAGGCCACCCCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTCGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATCAAGGATGCTTCAGGTTTAGAACTTCATCGTAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAGGTGCAAAGACACCTGCAGTTGCGAATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGTAGCTTCCGGCGGCTACAAGGCCATGGGTGGCATGCCAAATGATAATAATAATAATAATCAGCAAGGCATTGGCAACATGACCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCACTCGGCTTCCCTTCTTTTCAAGACCTGAACCTTTATGGAGGCGACCACAGCCTTGATCTTCAGCAAAACGTGGATGGATACATGCCTCACAATGACAGCTTACTATGCTTGGGAAAGAAGAAGCCGAGGCCGGCACCATCTACGCCAAACTATGGCGCCAGCCCCGGAAAAGGTGCGTTGGACTGGCCGGATGATCTCCGACTGCAGGATATAGGAATGGCGCCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTTAAAGGCATTGGTGGGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGCAGTGTCGGATGAAGGAATTGGGGATCACAAGAAGTATGACATCAATAATAATAATAATAATAATAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCCGAAGGGTACCCCTTTCCGTGGATAGGGCTAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1164 49.05 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMVASGGYKAMGGMPNDNNNNNQQGIGNMTGAGGIKDFGSPLGFPSFQDLNLYGGDHSLDLQQNVDGYMPHNDSLLCLGKKKPRPAPSTPNYGASPGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGGTLVERDHLEEMYEAKPAVSDEGIGDHKKYDINNNNNNNNNNASIKLQRPSPRRVPLSVDRANHPLTTAPQSTHSPFG 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24259033 24261452 - Lsi11G015860.1 Lsi11g01586 674753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01586 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Lsi11g01586 387 MobiDBLite consensus disorder prediction 324 338 - -
Lsi11g01586 387 MobiDBLite consensus disorder prediction 373 387 - -
Lsi11g01586 387 Pfam MYB-CC type transfactor, LHEQLE motif 129 174 IPR025756 -
Lsi11g01586 387 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 290 - -
Lsi11g01586 387 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Lsi11g01586 387 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Lsi11g01586 387 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Lsi11g01586 387 MobiDBLite consensus disorder prediction 324 387 - -
Lsi11g01586 387 Gene3D - 31 89 - -
Lsi11g01586 387 MobiDBLite consensus disorder prediction 339 357 - -
Lsi11g01586 387 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 290 IPR044848 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00520 Lsi-Chr1:4247675 Lsi11g01586 Lsi-Chr11:24259033 1.18E-43 dispersed
Lsi03g01675 Lsi-Chr3:27944519 Lsi11g01586 Lsi-Chr11:24259033 1.35E-09 dispersed
Lsi06g00775 Lsi-Chr6:15079402 Lsi11g01586 Lsi-Chr11:24259033 6.02E-29 dispersed
Lsi03g01231 Lsi-Chr3:22888679 Lsi11g01586 Lsi-Chr11:24259033 8.91E-18 transposed
Lsi03g01290 Lsi-Chr3:23709912 Lsi11g01586 Lsi-Chr11:24259033 3.00E-50 transposed
Lsi03g01674 Lsi-Chr3:27938426 Lsi11g01586 Lsi-Chr11:24259033 1.11E-14 transposed
Lsi05g01838 Lsi-Chr5:25663614 Lsi11g01586 Lsi-Chr11:24259033 1.74E-64 transposed
Lsi11g00973 Lsi-Chr11:15600557 Lsi11g01586 Lsi-Chr11:24259033 1.37E-16 transposed
Lsi10g01509 Lsi-Chr10:19348345 Lsi11g01586 Lsi-Chr11:24259033 6.45E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26229 PF00249 Myb_DNA-binding 2.20E-06 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01586 - - csv:101217821 699.123