Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01586 | ATGTTCCATCCCAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCCGTCACTCAGCTCGGAGGCCCTGATAAGGCCACCCCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTCGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATCAAGGATGCTTCAGGTTTAGAACTTCATCGTAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAGGTGCAAAGACACCTGCAGTTGCGAATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGTAGCTTCCGGCGGCTACAAGGCCATGGGTGGCATGCCAAATGATAATAATAATAATAATCAGCAAGGCATTGGCAACATGACCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCACTCGGCTTCCCTTCTTTTCAAGACCTGAACCTTTATGGAGGCGACCACAGCCTTGATCTTCAGCAAAACGTGGATGGATACATGCCTCACAATGACAGCTTACTATGCTTGGGAAAGAAGAAGCCGAGGCCGGCACCATCTACGCCAAACTATGGCGCCAGCCCCGGAAAAGGTGCGTTGGACTGGCCGGATGATCTCCGACTGCAGGATATAGGAATGGCGCCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTTAAAGGCATTGGTGGGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGCAGTGTCGGATGAAGGAATTGGGGATCACAAGAAGTATGACATCAATAATAATAATAATAATAATAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCCGAAGGGTACCCCTTTCCGTGGATAGGGCTAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA | 1164 | 49.05 | MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMVASGGYKAMGGMPNDNNNNNQQGIGNMTGAGGIKDFGSPLGFPSFQDLNLYGGDHSLDLQQNVDGYMPHNDSLLCLGKKKPRPAPSTPNYGASPGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGGTLVERDHLEEMYEAKPAVSDEGIGDHKKYDINNNNNNNNNNASIKLQRPSPRRVPLSVDRANHPLTTAPQSTHSPFG | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 24259033 | 24261452 | - | Lsi11G015860.1 | Lsi11g01586 | 674753 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01586 | 387 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 29 | 89 | IPR017930 | - | |
Lsi11g01586 | 387 | MobiDBLite | consensus disorder prediction | 324 | 338 | - | - | |
Lsi11g01586 | 387 | MobiDBLite | consensus disorder prediction | 373 | 387 | - | - | |
Lsi11g01586 | 387 | Pfam | MYB-CC type transfactor, LHEQLE motif | 129 | 174 | IPR025756 | - | |
Lsi11g01586 | 387 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR APL | 1 | 290 | - | - | |
Lsi11g01586 | 387 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 32 | 87 | IPR006447 | GO:0003677 | |
Lsi11g01586 | 387 | Pfam | Myb-like DNA-binding domain | 35 | 83 | IPR001005 | - | |
Lsi11g01586 | 387 | SUPERFAMILY | Homeodomain-like | 31 | 87 | IPR009057 | - | |
Lsi11g01586 | 387 | MobiDBLite | consensus disorder prediction | 324 | 387 | - | - | |
Lsi11g01586 | 387 | Gene3D | - | 31 | 89 | - | - | |
Lsi11g01586 | 387 | MobiDBLite | consensus disorder prediction | 339 | 357 | - | - | |
Lsi11g01586 | 387 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 1 | 290 | IPR044848 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00520 | Lsi-Chr1:4247675 | Lsi11g01586 | Lsi-Chr11:24259033 | 1.18E-43 | dispersed | |
Lsi03g01675 | Lsi-Chr3:27944519 | Lsi11g01586 | Lsi-Chr11:24259033 | 1.35E-09 | dispersed | |
Lsi06g00775 | Lsi-Chr6:15079402 | Lsi11g01586 | Lsi-Chr11:24259033 | 6.02E-29 | dispersed | |
Lsi03g01231 | Lsi-Chr3:22888679 | Lsi11g01586 | Lsi-Chr11:24259033 | 8.91E-18 | transposed | |
Lsi03g01290 | Lsi-Chr3:23709912 | Lsi11g01586 | Lsi-Chr11:24259033 | 3.00E-50 | transposed | |
Lsi03g01674 | Lsi-Chr3:27938426 | Lsi11g01586 | Lsi-Chr11:24259033 | 1.11E-14 | transposed | |
Lsi05g01838 | Lsi-Chr5:25663614 | Lsi11g01586 | Lsi-Chr11:24259033 | 1.74E-64 | transposed | |
Lsi11g00973 | Lsi-Chr11:15600557 | Lsi11g01586 | Lsi-Chr11:24259033 | 1.37E-16 | transposed | |
Lsi10g01509 | Lsi-Chr10:19348345 | Lsi11g01586 | Lsi-Chr11:24259033 | 6.45E-99 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26229 | PF00249 | Myb_DNA-binding | 2.20E-06 | CL0123 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01586 | - | - | csv:101217821 | 699.123 |