Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01586 ATGTTCCATCCCAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCCGTCACTCAGCTCGGAGGCCCTGATAAGGCCACCCCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTCGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATCAAGGATGCTTCAGGTTTAGAACTTCATCGTAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAGGTGCAAAGACACCTGCAGTTGCGAATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGTAGCTTCCGGCGGCTACAAGGCCATGGGTGGCATGCCAAATGATAATAATAATAATAATCAGCAAGGCATTGGCAACATGACCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCACTCGGCTTCCCTTCTTTTCAAGACCTGAACCTTTATGGAGGCGACCACAGCCTTGATCTTCAGCAAAACGTGGATGGATACATGCCTCACAATGACAGCTTACTATGCTTGGGAAAGAAGAAGCCGAGGCCGGCACCATCTACGCCAAACTATGGCGCCAGCCCCGGAAAAGGTGCGTTGGACTGGCCGGATGATCTCCGACTGCAGGATATAGGAATGGCGCCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTTAAAGGCATTGGTGGGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGCAGTGTCGGATGAAGGAATTGGGGATCACAAGAAGTATGACATCAATAATAATAATAATAATAATAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCCGAAGGGTACCCCTTTCCGTGGATAGGGCTAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1164 49.05 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMVASGGYKAMGGMPNDNNNNNQQGIGNMTGAGGIKDFGSPLGFPSFQDLNLYGGDHSLDLQQNVDGYMPHNDSLLCLGKKKPRPAPSTPNYGASPGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGGTLVERDHLEEMYEAKPAVSDEGIGDHKKYDINNNNNNNNNNASIKLQRPSPRRVPLSVDRANHPLTTAPQSTHSPFG 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24259033 24261452 - Lsi11G015860.1 Lsi11g01586 674753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01586 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Lsi11g01586 387 MobiDBLite consensus disorder prediction 324 338 - -
Lsi11g01586 387 MobiDBLite consensus disorder prediction 373 387 - -
Lsi11g01586 387 Pfam MYB-CC type transfactor, LHEQLE motif 129 174 IPR025756 -
Lsi11g01586 387 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 290 - -
Lsi11g01586 387 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Lsi11g01586 387 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Lsi11g01586 387 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Lsi11g01586 387 MobiDBLite consensus disorder prediction 324 387 - -
Lsi11g01586 387 Gene3D - 31 89 - -
Lsi11g01586 387 MobiDBLite consensus disorder prediction 339 357 - -
Lsi11g01586 387 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 290 IPR044848 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01586 - - - csv:101217821 699.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00520 Lsi-Chr1:4247675 Lsi11g01586 Lsi-Chr11:24259033 1.18E-43 dispersed
Lsi03g01675 Lsi-Chr3:27944519 Lsi11g01586 Lsi-Chr11:24259033 1.35E-09 dispersed
Lsi06g00775 Lsi-Chr6:15079402 Lsi11g01586 Lsi-Chr11:24259033 6.02E-29 dispersed
Lsi03g01231 Lsi-Chr3:22888679 Lsi11g01586 Lsi-Chr11:24259033 8.91E-18 transposed
Lsi03g01290 Lsi-Chr3:23709912 Lsi11g01586 Lsi-Chr11:24259033 3.00E-50 transposed
Lsi03g01674 Lsi-Chr3:27938426 Lsi11g01586 Lsi-Chr11:24259033 1.11E-14 transposed
Lsi05g01838 Lsi-Chr5:25663614 Lsi11g01586 Lsi-Chr11:24259033 1.74E-64 transposed
Lsi11g00973 Lsi-Chr11:15600557 Lsi11g01586 Lsi-Chr11:24259033 1.37E-16 transposed
Lsi10g01509 Lsi-Chr10:19348345 Lsi11g01586 Lsi-Chr11:24259033 6.45E-99 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi04g00286 . 19 257 G2-like Transcription Factor Family AT1G25550 54.9 6.3e-54 208.0
Lsi08g00393 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 3.8e-51 198.7
Lsi02g01341 . 1 269 G2-like Transcription Factor Family AT3G46640 52.2 1.5e-62 236.9
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT5G05090 55.6 7.9e-70 260.8
Lsi05g01838 . 7 314 G2-like Transcription Factor Family AT4G13640 53.6 6.1e-55 211.5
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi11g01586 . 1 387 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-81 299.7
Lsi10g01509 . 1 166 G2-like Transcription Factor Family AT1G79430 71.0 3.1e-61 232.6
Lsi03g01290 . 70 292 G2-like Transcription Factor Family AT5G18240 53.3 6.4e-50 194.9
Lsi01g00520 . 84 343 G2-like Transcription Factor Family AT2G01060 56.8 2.5e-51 199.1
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT3G10760 56.9 5.6e-81 298.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26229 PF00249 Myb_DNA-binding 2.20E-06 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01586 Lsi_Chr11 FPKM 25.018545 30.467091 22.614347 22.855761 14.224893 14.912439 13.475003 37.747131 40.590034 34.69957