Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01590 ATGGGAAATAAAAACTCCATCCATCGCTCAAAATCCCACTACCCAAAAGCTGATCTCTTCAGCACCATCCACTCCACTATTAATTCCTCTTCTCCTCCACTCCAGTTTTACTATCTACGCAAAAACAAGAGGATGTTAAAATTCTTCTTTGTTTTTGTTACCTTGTTCCTCCCTGCTCTAGTCTCCGGCGGGCGGGAATCATGTACCTGTGATTCCGATGCCGCTGACGCTGATCAGCACAACGCCGCAAAAGAAGCAATCAAATACAAGGTGGGGTCAATTGCGTCGGTGCTGGTGGCCGGCGCTGCAGGGGTGAGCCTTCCTTTGTTGGGCAAGAAGATTCGCTCTCTGAGACCAGAAAACGACATATTTTTCATGATCAAGGCTTTTGCTGCAGGGGTCATTTTGGGCACTGGGTTCATTCACATACTGCCCGATGCCTTTCAAGACTTGACCTCCTCTTGCCTCGGCCAAAATCCTTGGGGCGATTTCCCATTTGCGGGCTTCATTGCAATGGCTGCCTCTATCGCCACCTTGATGCTGGACACATTTGCAACCAGTTTTTACCAGAGACGCCACTTCAGTAGAACCAAGCAGGTAATTGCAGACCAGGAAAGAGGCGACGACCATGCCGGTCACGTGCATGTTCACACGCACGCCACTCATGGCCATGCTCATGGATCTGCCGCCGCTCCCACCGGAGAATTGAGTCTCGCTGACTTGATCCGCTACCGGATTATATCTCAGGTGTTGGAATTGGGAATTGTGGTTCATTCGGTAATAATTGGTATATCTCTTGGTGCCTCGCAGAGCCCTGCCACCATTAAACCACTGCTGGTAGCTCTGTCTTTCCACCAATTTTTTGAGGGCATGGGTCTTGGTGGCTGCATTTCCCAGGCACAATTTAGGTGGCGATCGGCGGCAGCAATGGCGACATTTTTCTCACTGACAGCGCCTGTGGGAATTGCAGTGGGAATCGGAATCTCGGGAGTTTACAGAGACAACAGCCGGACGGCTCTGATCGTGGAAGGAAGCATGAACTCAGCATCGGCAGGGATATTGATTTACATGGCGCTTGTGGACCTTCTTGCTGCGGATTTCATGAACCCAAGGATGCAAAACAATTTGGGGCTTCAATTAGGAGCTAACATCTCTTTACTTCTAGGGGCTGCTTGCATGTCTGTATTGGCCAAATGGGCTTGA 1203 50.04 MGNKNSIHRSKSHYPKADLFSTIHSTINSSSPPLQFYYLRKNKRMLKFFFVFVTLFLPALVSGGRESCTCDSDAADADQHNAAKEAIKYKVGSIASVLVAGAAGVSLPLLGKKIRSLRPENDIFFMIKAFAAGVILGTGFIHILPDAFQDLTSSCLGQNPWGDFPFAGFIAMAASIATLMLDTFATSFYQRRHFSRTKQVIADQERGDDHAGHVHVHTHATHGHAHGSAAAPTGELSLADLIRYRIISQVLELGIVVHSVIIGISLGASQSPATIKPLLVALSFHQFFEGMGLGGCISQAQFRWRSAAAMATFFSLTAPVGIAVGIGISGVYRDNSRTALIVEGSMNSASAGILIYMALVDLLAADFMNPRMQNNLGLQLGANISLLLGAACMSVLAKWA 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24288182 24296206 - Lsi11G015900.1 Lsi11g01590 674757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01590 400 PANTHER ZINC/IRON TRANSPORTER 50 400 - -
Lsi11g01590 400 PANTHER METAL TRANSPORT PROTEIN 50 400 - -
Lsi11g01590 400 Pfam ZIP Zinc transporter 89 397 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Lsi11g01590 400 TIGRFAM zip: ZIP zinc/iron transport family 75 400 IPR004698 GO:0005385|GO:0016021|GO:0071577
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01027 Lsi-Chr2:10757018 Lsi11g01590 Lsi-Chr11:24288182 2.04E-111 dispersed
Lsi04g01927 Lsi-Chr4:26474606 Lsi11g01590 Lsi-Chr11:24288182 9.53E-104 dispersed
Lsi08g01583 Lsi-Chr8:23857805 Lsi11g01590 Lsi-Chr11:24288182 2.41E-91 dispersed
Lsi10g01445 Lsi-Chr10:18536607 Lsi11g01590 Lsi-Chr11:24288182 7.74E-62 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01590 K14709 - csv:101216720 547.354