Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01613 ATGGCGTCTTCGTCTTTAGGTTTCATCTTTGTTCTTTGTGCTATTGCTTCCATCCTCACCCACCTGATTGTTTTGTCTCAAGCTCAGAATTCAGCTCAACCCCCCACCGATCCTGATCAAGCAAGAGCTCTGAATTCCATATTTAGACAATGGCGTATATCAGCGCCATCAGGGGCGTGGAATATAAGCGGGAATCTGTGCAGTGGGAGGGCAGTCGACACTACAACTCCCATCGATAGTAATGGAAATCTCAATCCTCTTATCAAATGTGATTGCTCAGCCAACAACGGTGCTACTTGTCTCATTACTCAACTGAAGTTGGATCAAAATTTCTTGACAGGAACACTATCTGCATCTGTTGGTAATCTCACAGAATTGCGAACCTTGAGCCTGGGCATTAATGCATTATCAGGGGAACTTCCGAAGGAACTTGGATCTCTTTCTAAACTGGAACTATTGGCATTTGGGTCCAACAATTTCTCTGGTCCCTTACCATCAGAGCTTGGAAATCTTTCTATGTTAAGAGAACTATACATTGATAGTTCTGGAGTTTCGGGTGGTATTCCTCCATCATTTTCAAGTCTAAGAAACTTGCAGACAGTATGGGCATCGGACAATGAATTCACTGGCAGAATACCTGATTTCATCGGGAATTGGACAAGGCTCACATCTTTGAGGTTTCAAGGAAACTCTTTTACAGGTCCCATACCATCGACATTTTCAAACTTGACATCTTTGACTGAGTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTGGCATTTATCAGTAAAATGACATCTTTAACTATCCTGGTGTTGAGAAATAATAATATGACTGGTTCAATTCCATCCAACATTGGAGAATTTCGTAGACTTACCCAGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCGCTATTCAGTTTGAGCTCACTATCACACTTGATTCTTGGAAATAATAAGTTAAATGGGACCATACCTACACAGAAGAGTGCGTCACTTCTAAATATAGACTTGTCATATAATGATTTATCAGGGAGCTTTCCTGCTTGGATCGACCAGCAAAACTTACAACTAAATTTAGTTGCCAACAATTTCACAGTTGAAAGTGGCAGTATCAGGTATTTCCACGATGGTTTGCCTTCTGGATTGAATTGTCTTCAACGTAACTTTCCTTGTAATCGAGGTCGTCCAATATATTCTGATTTCGGGATCAAGTGTGGAGGTCCACAGATCACAAGTTCATCAGGGATTTTGTTTGAAAGGGAAAATGAGACTCTCGGTCCTGCTACGTACTTTGTTACCGAGTCACAAAGGTGGGCCGTTAGTAATACTGGATACTTTACTGGGTCCAGCAATCCTCGATACACAGCCAATACGTTGTCTCAATTCCCGAACACCCTTGACACAGAACTTTTTCAGTCACAGCGACTATCTGCTTCATCATTGAGATACTATGGACTAGGGCTTGAGAATGGCAACTACACTGTGAAACTTCATTTTGCAGAAATAGCTTTCCCAGATTCAAATACATGGCAAAGCCGTGGGAGGCGTCTCTTTGATATATATATACAGGGAAATCGTGTGTTACAGAATTTTGATATTAGAAAGGAAGCAGGTGGGTCTTTCCTTGCTGTCGGAAAGAATTTTACGGCTGAAGTTACAGAAAACTTCCTGGAAATTCATCTCTTTTGGGCGGGGAAAGGTACTTGCTGCATACCTAATCAGGGTGATTTTGGACCCACTGTTTCAGCCATCAGTGCTACCCCAGTATTCCTTGTTGTTCAGAGAAGGAGAAGGCGTCGTGCCTATGAAGATGAAGAGCTCCTAGGAATAGACACTAGACCATACACTTTTAGTTTTTCTGAACTAAGGAGTGCTACAAATGACTTCAATTCATCCAACAAACTTGGCGAGGGAGGATTTGGACCTGTTTACAAGACTGAATCAATCTTGAAGGTGAGGATTAAACGTGCCATAAGTTTCACCAATATCAATTACCGTTCTTGCTTCGTAGTTCGTACGATAGGAACATTGAATGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATCGCTACAATATCTGCAGTGCAACATCGTAACCTTGTGAAATTATATGGATGTTGCATTGAGGCCGATAAACGTCTCCTTGTTTATGAGTTTCTTGAAAACAAGAGTCTTGACCAAGCACTATTTGGACAAAAACATTTGATTATTGATTGGCCAACACGTTTTGAGATATGCGTGGGTGTAGCAAGGGGTCTCACTTACCTTCATGAGGAATCAAGACTTCGCATAGTGCACAGAGATGTTAAGGCCAGTAACATCCTGCTTGATGGTAATCTGATTCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACAAGAAGACTCATATAAGCACCCGTGTTGCTGGGACAATTGGTTATCTTGCACCTGAGTATGCCATGCGTGGCCACCTTACGGAGAAGGCCGATGTCTTTGGATTTGGCGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCAAATTCAGACCCAAGCTTAGAGCAAGACAAAATTTATCTTCTCGAATGGGCATGGTATCTCCACGAAAACAACTGTGAACTTGAGATGGTGGATTCTGAATTATCAGAGTTCAGCAAGGAAGAAGTAAAAAGAGTCATTGGTGTTGCTCTTCTGTGTACTCAAACATCCCCAGCACTTCGGCCATCGATGTCCCGCGTGGTGGCAATGCTGACTGGAGACATCGGAGTGGCTGCTGTAACTTCCAAACCAGGATACTTGACAGATTGGAAATTTGATGACATTACAAGCTTTATAAATGATACTCCATCAACTGAAGAACCTGATACTGGCCGTTATGCATCGACAAGTTCGAGTATTGTTGATACAAAGCGCTCACCAGCCAATGCTTCTGAACCAATGCTTCGTGGATTATTAGGAGAGGGTAGGTGA 3021 42.44 MASSSLGFIFVLCAIASILTHLIVLSQAQNSAQPPTDPDQARALNSIFRQWRISAPSGAWNISGNLCSGRAVDTTTPIDSNGNLNPLIKCDCSANNGATCLITQLKLDQNFLTGTLSASVGNLTELRTLSLGINALSGELPKELGSLSKLELLAFGSNNFSGPLPSELGNLSMLRELYIDSSGVSGGIPPSFSSLRNLQTVWASDNEFTGRIPDFIGNWTRLTSLRFQGNSFTGPIPSTFSNLTSLTELRIGDLSNGSSSLAFISKMTSLTILVLRNNNMTGSIPSNIGEFRRLTQLDLSFNNLTGEIPSSLFSLSSLSHLILGNNKLNGTIPTQKSASLLNIDLSYNDLSGSFPAWIDQQNLQLNLVANNFTVESGSIRYFHDGLPSGLNCLQRNFPCNRGRPIYSDFGIKCGGPQITSSSGILFERENETLGPATYFVTESQRWAVSNTGYFTGSSNPRYTANTLSQFPNTLDTELFQSQRLSASSLRYYGLGLENGNYTVKLHFAEIAFPDSNTWQSRGRRLFDIYIQGNRVLQNFDIRKEAGGSFLAVGKNFTAEVTENFLEIHLFWAGKGTCCIPNQGDFGPTVSAISATPVFLVVQRRRRRRAYEDEELLGIDTRPYTFSFSELRSATNDFNSSNKLGEGGFGPVYKTESILKVRIKRAISFTNINYRSCFVVRTIGTLNDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFGQKHLIIDWPTRFEICVGVARGLTYLHEESRLRIVHRDVKASNILLDGNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKIYLLEWAWYLHENNCELEMVDSELSEFSKEEVKRVIGVALLCTQTSPALRPSMSRVVAMLTGDIGVAAVTSKPGYLTDWKFDDITSFINDTPSTEEPDTGRYASTSSSIVDTKRSPANASEPMLRGLLGEGR 1006
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24461212 24472031 + Lsi11G016130.1 Lsi11g01613 674780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01613 1006 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 683 975 - -
Lsi11g01613 1006 SMART serkin_6 637 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01613 1006 MobiDBLite consensus disorder prediction 964 1006 - -
Lsi11g01613 1006 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 86 599 - -
Lsi11g01613 1006 Gene3D Phosphorylase Kinase; domain 1 599 741 - -
Lsi11g01613 1006 SUPERFAMILY Protein kinase-like (PK-like) 620 953 IPR011009 -
Lsi11g01613 1006 Gene3D Ribonuclease Inhibitor 258 395 IPR032675 -
Lsi11g01613 1006 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 607 655 - -
Lsi11g01613 1006 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 607 655 - -
Lsi11g01613 1006 Pfam Protein tyrosine and serine/threonine kinase 641 933 IPR001245 GO:0004672|GO:0006468
Lsi11g01613 1006 CDD STKc_IRAK 643 936 - -
Lsi11g01613 1006 Gene3D - 409 595 - -
Lsi11g01613 1006 Gene3D Ribonuclease Inhibitor 60 257 IPR032675 -
Lsi11g01613 1006 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 86 599 - -
Lsi11g01613 1006 Pfam Malectin domain 409 592 IPR021720 -
Lsi11g01613 1006 SUPERFAMILY L domain-like 89 371 - -
Lsi11g01613 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Lsi11g01613 1006 MobiDBLite consensus disorder prediction 964 989 - -
Lsi11g01613 1006 ProSiteProfiles Protein kinase domain profile. 637 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01613 1006 Gene3D Transferase(Phosphotransferase) domain 1 742 941 - -
Lsi11g01613 1006 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 683 975 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01232 Lsi-Chr6:22704046 Lsi11g01613 Lsi-Chr11:24461212 2.83E-92 dispersed
Lsi11g01613 Lsi-Chr11:24461212 Lsi11g01653 Lsi-Chr11:24830084 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84057 PF07714 PK_Tyr_Ser-Thr 4.40E-41 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01613 - - csv:101212465 1721.06