Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01618 ATGGCCGCGTCAGAGATGATGATGAAAAAGGGAAGTGGGCCAGCGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGGTGTGCTCCGGACTGCGTTTTTGCTCCTTATTTCCCTGCCGATCAGCCCCACAAATTCTCCAGTGTCCACAAGGTTTTTGGAGCTAGTAATGTCAGCAAATTGTTGCAGCACAGTCTTCAGTCTTTTAGTAGTGGTGCGCAGTTCTCTTTGCTTTTAGAAAGCAAGAGAAGGCTATCTTTTGCAGATTATTCTTCATCTCACATAGGAATTTTGATATATTTTGTTTTAGCTAAAGAGTTGCCAGAGCATCAACGAAGTGACGCGGTGAGTTCGATGGTATATGAGGCAAATGCGAGAATTCGAGATCCAGTATACGGGTGTGTGGGAACGATATCCTGTCTACAACGACAAGTAGATGTGCTACAACAACAACTAGCAATGACACAAGCCCAATTAGTTCAATTGAAAATGGGCCAATTTACATCAACATCACAATCATCATCTAGTACCGATGACCTCCTTCCTCCTACGCCCAATATCAATGATTCCTTTGCCTTTATTGTTCTTTGTGTTACTGTTTATTGTCTTATTTTCTTGTTTTGTTTTGGTTACATCGATTTCCAAACAGAATATATTGGATGTGTTTGGTGTCAAGAGCGCCTTGAGTTGAGAGATACATAA 699 42.92 MAASEMMMKKGSGPAPCAACKLLRRRCAPDCVFAPYFPADQPHKFSSVHKVFGASNVSKLLQHSLQSFSSGAQFSLLLESKRRLSFADYSSSHIGILIYFVLAKELPEHQRSDAVSSMVYEANARIRDPVYGCVGTISCLQRQVDVLQQQLAMTQAQLVQLKMGQFTSTSQSSSSTDDLLPPTPNINDSFAFIVLCVTVYCLIFLFCFGYIDFQTEYIGCVWCQERLELRDT 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24517061 24520960 - Lsi11G016180.1 Lsi11g01618 674785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01618 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 8 176 - -
Lsi11g01618 232 Pfam Lateral organ boundaries (LOB) domain 103 155 IPR004883 -
Lsi11g01618 232 Pfam Lateral organ boundaries (LOB) domain 16 86 IPR004883 -
Lsi11g01618 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 176 - -
Lsi11g01618 232 ProSiteProfiles LOB domain profile. 15 158 IPR004883 -
Lsi11g01618 232 Coils Coil 137 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01618 Lsi-Chr11:24517061 Lsi10g01458 Lsi-Chr10:18689456 2.12E-44 dispersed
Lsi10g01525 Lsi-Chr10:19619135 Lsi11g01618 Lsi-Chr11:24517061 4.91E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26231 PF03195 LOB 1.70E-22 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01618 - - csv:101213100 206.453