Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01627 | ATGTCATCTGGAAGTAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTTTTGATTCTCGGTATCTTATCTGTATGGGTGATGTTTCGAAGAAAAACAAGGAGATCCCCAGAAAACTTCTCTATTTCCCAAATACCAAATGTCTCGAAGGATATTAAGGTGGACAGAATCGCGACTCAATCTGCCCACCACAATCATCTCGAGAACCTTTATCTTTCCATTCACGATAAATCAAGTGAGAAGAACTCGGAGAAGATGATTGGTCATTTAGGTATGAGTAAGTCTAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCATGAAAGGGTTTTCAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAACAGTCTTCCATATCATATGGAGGGTATGGAGGCCTTGTGACTGCCTCTCCTCTTGTTGGCTTACCTGAAATTTCACATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACAAATCGTTTCGCTGCAGACAATGTGCTTGGTGAAGGGGGTTATGGGGTTGTCTATAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGTCATGTAAGACACAAGAACCTTGTACGGCTCCTCGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGAAACCTAGAGCAATGGTTACATGGGGCCATGCGGCAACATGGCACCCTTACTTGGGAGGCCCGAATGAAGGTGCTTCTTGGCACTGCAAAGGCGCTAGCATATTTACATGAAGCAATTGAACCGAAGGTTGTGCACAGAGACATAAAATCGAGCAACATCTTAATTGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAACTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGGTATGTGGCGCCAGAATATGCCAACACTGGCTTGTTAAATGAGAAGAGTGACATTTATAGCTTTGGTGTTCTCCTTCTTGAAGCAATTACAGGAAGGGACCCGGTGGACTATGGCCGTCCTACTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTTGGCACAAGGAGAGCTGAGGAAGTTATTGACCCAAGTCTTGAAACTAAACCCGCTACACGAGCTTTGAAACGTGCCCTTCTGATTGCGCTCAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACCCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGGCGGAGCCAGAAGAGCAGCACAGCAAACTCAGAGATCGATTCCAGTCAAGGCGAGATAGGAAGTAAACCAGGGGAATCACAAAGCAGAGTGGTAAACGCATGA | 1527 | 43.88 | MSSGSSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSISQIPNVSKDIKVDRIATQSAHHNHLENLYLSIHDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSISYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFAADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPTNEVNLVEWLKVMVGTRRAEEVIDPSLETKPATRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSTANSEIDSSQGEIGSKPGESQSRVVNA | 508 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 24618672 | 24623620 | + | Lsi11G016270.1 | Lsi11g01627 | 674794 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01627 | 508 | PANTHER | OS10G0497600 PROTEIN | 4 | 501 | - | - | |
Lsi11g01627 | 508 | ProSitePatterns | Protein kinases ATP-binding region signature. | 199 | 222 | IPR017441 | GO:0005524 | |
Lsi11g01627 | 508 | MobiDBLite | consensus disorder prediction | 463 | 508 | - | - | |
Lsi11g01627 | 508 | Gene3D | Transferase(Phosphotransferase) domain 1 | 269 | 483 | - | - | |
Lsi11g01627 | 508 | MobiDBLite | consensus disorder prediction | 482 | 508 | - | - | |
Lsi11g01627 | 508 | MobiDBLite | consensus disorder prediction | 463 | 481 | - | - | |
Lsi11g01627 | 508 | Gene3D | Phosphorylase Kinase; domain 1 | 175 | 268 | - | - | |
Lsi11g01627 | 508 | CDD | STKc_IRAK | 199 | 465 | - | - | |
Lsi11g01627 | 508 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 315 | 327 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi11g01627 | 508 | SMART | serkin_6 | 193 | 464 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01627 | 508 | SUPERFAMILY | Protein kinase-like (PK-like) | 177 | 471 | IPR011009 | - | |
Lsi11g01627 | 508 | ProSiteProfiles | Protein kinase domain profile. | 193 | 451 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01627 | 508 | Pfam | Protein kinase domain | 196 | 462 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01627 | 508 | Coils | Coil | 213 | 233 | - | - | |
Lsi11g01627 | 508 | PANTHER | OS01G0323000 PROTEIN | 4 | 501 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi11g00119 | Lsi-Chr11:1318546 | Lsi11g01627 | Lsi-Chr11:24618672 | 3.96E-70 | dispersed | |
Lsi11g00661 | Lsi-Chr11:6964869 | Lsi11g01627 | Lsi-Chr11:24618672 | 3.11E-163 | dispersed | |
Lsi11g01100 | Lsi-Chr11:19137663 | Lsi11g01627 | Lsi-Chr11:24618672 | 2.49E-154 | dispersed | |
Lsi11g01627 | Lsi-Chr11:24618672 | Lsi06g00871 | Lsi-Chr6:18218127 | 1.06E-91 | dispersed | |
Lsi02g02327 | Lsi-Chr2:29889142 | Lsi11g01627 | Lsi-Chr11:24618672 | 3.80E-76 | transposed | |
Lsi11g01242 | Lsi-Chr11:21059456 | Lsi11g01627 | Lsi-Chr11:24618672 | 5.64E-59 | transposed | |
Lsi10g01538 | Lsi-Chr10:19777590 | Lsi11g01627 | Lsi-Chr11:24618672 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84058 | PF00069 | Pkinase | 4.20E-48 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01627 | - | - | csv:101212378 | 982.63 |