Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01627 ATGTCATCTGGAAGTAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTTTTGATTCTCGGTATCTTATCTGTATGGGTGATGTTTCGAAGAAAAACAAGGAGATCCCCAGAAAACTTCTCTATTTCCCAAATACCAAATGTCTCGAAGGATATTAAGGTGGACAGAATCGCGACTCAATCTGCCCACCACAATCATCTCGAGAACCTTTATCTTTCCATTCACGATAAATCAAGTGAGAAGAACTCGGAGAAGATGATTGGTCATTTAGGTATGAGTAAGTCTAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCATGAAAGGGTTTTCAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAACAGTCTTCCATATCATATGGAGGGTATGGAGGCCTTGTGACTGCCTCTCCTCTTGTTGGCTTACCTGAAATTTCACATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACAAATCGTTTCGCTGCAGACAATGTGCTTGGTGAAGGGGGTTATGGGGTTGTCTATAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGTCATGTAAGACACAAGAACCTTGTACGGCTCCTCGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGAAACCTAGAGCAATGGTTACATGGGGCCATGCGGCAACATGGCACCCTTACTTGGGAGGCCCGAATGAAGGTGCTTCTTGGCACTGCAAAGGCGCTAGCATATTTACATGAAGCAATTGAACCGAAGGTTGTGCACAGAGACATAAAATCGAGCAACATCTTAATTGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAACTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGGTATGTGGCGCCAGAATATGCCAACACTGGCTTGTTAAATGAGAAGAGTGACATTTATAGCTTTGGTGTTCTCCTTCTTGAAGCAATTACAGGAAGGGACCCGGTGGACTATGGCCGTCCTACTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTTGGCACAAGGAGAGCTGAGGAAGTTATTGACCCAAGTCTTGAAACTAAACCCGCTACACGAGCTTTGAAACGTGCCCTTCTGATTGCGCTCAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACCCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGGCGGAGCCAGAAGAGCAGCACAGCAAACTCAGAGATCGATTCCAGTCAAGGCGAGATAGGAAGTAAACCAGGGGAATCACAAAGCAGAGTGGTAAACGCATGA 1527 43.88 MSSGSSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSISQIPNVSKDIKVDRIATQSAHHNHLENLYLSIHDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSISYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFAADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPTNEVNLVEWLKVMVGTRRAEEVIDPSLETKPATRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSTANSEIDSSQGEIGSKPGESQSRVVNA 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24618672 24623620 + Lsi11G016270.1 Lsi11g01627 674794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01627 508 PANTHER OS10G0497600 PROTEIN 4 501 - -
Lsi11g01627 508 ProSitePatterns Protein kinases ATP-binding region signature. 199 222 IPR017441 GO:0005524
Lsi11g01627 508 MobiDBLite consensus disorder prediction 463 508 - -
Lsi11g01627 508 Gene3D Transferase(Phosphotransferase) domain 1 269 483 - -
Lsi11g01627 508 MobiDBLite consensus disorder prediction 482 508 - -
Lsi11g01627 508 MobiDBLite consensus disorder prediction 463 481 - -
Lsi11g01627 508 Gene3D Phosphorylase Kinase; domain 1 175 268 - -
Lsi11g01627 508 CDD STKc_IRAK 199 465 - -
Lsi11g01627 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
Lsi11g01627 508 SMART serkin_6 193 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01627 508 SUPERFAMILY Protein kinase-like (PK-like) 177 471 IPR011009 -
Lsi11g01627 508 ProSiteProfiles Protein kinase domain profile. 193 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01627 508 Pfam Protein kinase domain 196 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01627 508 Coils Coil 213 233 - -
Lsi11g01627 508 PANTHER OS01G0323000 PROTEIN 4 501 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00119 Lsi-Chr11:1318546 Lsi11g01627 Lsi-Chr11:24618672 3.96E-70 dispersed
Lsi11g00661 Lsi-Chr11:6964869 Lsi11g01627 Lsi-Chr11:24618672 3.11E-163 dispersed
Lsi11g01100 Lsi-Chr11:19137663 Lsi11g01627 Lsi-Chr11:24618672 2.49E-154 dispersed
Lsi11g01627 Lsi-Chr11:24618672 Lsi06g00871 Lsi-Chr6:18218127 1.06E-91 dispersed
Lsi02g02327 Lsi-Chr2:29889142 Lsi11g01627 Lsi-Chr11:24618672 3.80E-76 transposed
Lsi11g01242 Lsi-Chr11:21059456 Lsi11g01627 Lsi-Chr11:24618672 5.64E-59 transposed
Lsi10g01538 Lsi-Chr10:19777590 Lsi11g01627 Lsi-Chr11:24618672 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84058 PF00069 Pkinase 4.20E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01627 - - csv:101212378 982.63