Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01628 | ATGTCAAATGATGAAGGCAAAAATGTGTACCAGCAGTACGATCCATTTCAATACAACCAGTTGGATATGAACCGTTCGATCTTCCATCAACAATCGGCGGCGTTGGATCCTGCTTTGATGAGCTTCACTAACTTCTTCGATACCTCGTTGGATTACAACAGCCTGTCGAGGGCGTTCGACGTGTCGTGCTGTTCATCTGAAGTCATTTCTCCAGTGGACGACATGTCGAAATCAAAGAAGGCTTCGACCACTCCAAATTCTTCAGTTTCGTCTTCGTCTAATGAAGCTGTGGTTGAAGAAGATTCAGTCAAGAGCAACAAAGAGGACATAAAAGGGTCCGAGAATAAAGATGAAGAAAAGTCTAAGAAACAGAACAGCATAACAAAAAAGAAAGAGAAACGGCAGAGGGAGCCCCGTTTTGCTTTCTTGACTAAGAGTGAGATTGATCACCTTGAAGATGGTTATAGATGGAGAAAATATGGTCAGAAAGCAGTTAAAAATAGTCCTTACCCCAGAAGCTACTACAGATGCACCAGCCAAAAATGTGTAGTGAAAAAACGAGTTGAAAGATCATATCAAGATCCATCTGTGGTGATTACTACATATGAAGGCCAACACAACCACCATTGCCCAGCTACACTCCGAGGCCATTCTGCAGGAATCATGTCATCTCCATTCTACGCACCAGCATCGACATCGGTAACGGCAGCCTCGTCGGGGCCTACGCTTCCTCAAGAACTCTTCTCGCATTTGTTACCGACGAATAACTGCCAAACCGACTCGACGTCGATGATGTACCAAAATCTAAGCCTTCAACAACACCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCAATCAAAAATAG | 876 | 43.49 | MSNDEGKNVYQQYDPFQYNQLDMNRSIFHQQSAALDPALMSFTNFFDTSLDYNSLSRAFDVSCCSSEVISPVDDMSKSKKASTTPNSSVSSSSNEAVVEEDSVKSNKEDIKGSENKDEEKSKKQNSITKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYAPASTSVTAASSGPTLPQELFSHLLPTNNCQTDSTSMMYQNLSLQQHLQMPDHYGLLQDLFNQK | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 24630520 | 24632779 | - | Lsi11G016280.1 | Lsi11g01628 | 674795 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01628 | 291 | MobiDBLite | consensus disorder prediction | 74 | 138 | - | - | |
Lsi11g01628 | 291 | MobiDBLite | consensus disorder prediction | 100 | 138 | - | - | |
Lsi11g01628 | 291 | PANTHER | WRKY TRANSCRIPTION FACTOR 71-RELATED | 14 | 289 | - | - | |
Lsi11g01628 | 291 | Gene3D | WRKY domain | 135 | 212 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01628 | 291 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 14 | 289 | IPR044810 | GO:0003700 | |
Lsi11g01628 | 291 | ProSiteProfiles | WRKY domain profile. | 146 | 211 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01628 | 291 | SMART | WRKY_cls | 151 | 210 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01628 | 291 | SUPERFAMILY | WRKY DNA-binding domain | 144 | 211 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi11g01628 | 291 | MobiDBLite | consensus disorder prediction | 74 | 99 | - | - | |
Lsi11g01628 | 291 | Pfam | WRKY DNA -binding domain | 152 | 208 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00176 | Lsi-Chr1:1703437 | Lsi11g01628 | Lsi-Chr11:24630520 | 8.17E-62 | dispersed | |
Lsi11g01628 | Lsi-Chr11:24630520 | Lsi04g00386 | Lsi-Chr4:3802108 | 3.54E-17 | dispersed | |
Lsi01g01080 | Lsi-Chr1:8963004 | Lsi11g01628 | Lsi-Chr11:24630520 | 1.91E-12 | transposed | |
Lsi01g01103 | Lsi-Chr1:9097575 | Lsi11g01628 | Lsi-Chr11:24630520 | 4.81E-13 | transposed | |
Lsi01g01436 | Lsi-Chr1:12531135 | Lsi11g01628 | Lsi-Chr11:24630520 | 4.25E-22 | transposed | |
Lsi03g00408 | Lsi-Chr3:4656714 | Lsi11g01628 | Lsi-Chr11:24630520 | 6.39E-31 | transposed | |
Lsi03g02255 | Lsi-Chr3:33499183 | Lsi11g01628 | Lsi-Chr11:24630520 | 3.49E-15 | transposed | |
Lsi05g01411 | Lsi-Chr5:22051870 | Lsi11g01628 | Lsi-Chr11:24630520 | 5.84E-46 | transposed | |
Lsi05g02073 | Lsi-Chr5:27631218 | Lsi11g01628 | Lsi-Chr11:24630520 | 3.70E-11 | transposed | |
Lsi05g02233 | Lsi-Chr5:28881769 | Lsi11g01628 | Lsi-Chr11:24630520 | 2.30E-32 | transposed | |
Lsi07g01483 | Lsi-Chr7:21620276 | Lsi11g01628 | Lsi-Chr11:24630520 | 8.58E-35 | transposed | |
Lsi08g00852 | Lsi-Chr8:16950503 | Lsi11g01628 | Lsi-Chr11:24630520 | 9.48E-30 | transposed | |
Lsi08g00885 | Lsi-Chr8:17234479 | Lsi11g01628 | Lsi-Chr11:24630520 | 1.82E-47 | transposed | |
Lsi10g00672 | Lsi-Chr10:9336487 | Lsi11g01628 | Lsi-Chr11:24630520 | 3.14E-11 | transposed | |
Lsi07g00019 | Lsi-Chr7:255094 | Lsi11g01628 | Lsi-Chr11:24630520 | 1.43E-24 | transposed | |
Lsi10g01539 | Lsi-Chr10:19786197 | Lsi11g01628 | Lsi-Chr11:24630520 | 1.01E-24 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26233 | PF03106 | WRKY | 5.40E-25 | CL0274 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01628 | - | - | csv:101211248 | 510.375 |