Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01628 ATGTCAAATGATGAAGGCAAAAATGTGTACCAGCAGTACGATCCATTTCAATACAACCAGTTGGATATGAACCGTTCGATCTTCCATCAACAATCGGCGGCGTTGGATCCTGCTTTGATGAGCTTCACTAACTTCTTCGATACCTCGTTGGATTACAACAGCCTGTCGAGGGCGTTCGACGTGTCGTGCTGTTCATCTGAAGTCATTTCTCCAGTGGACGACATGTCGAAATCAAAGAAGGCTTCGACCACTCCAAATTCTTCAGTTTCGTCTTCGTCTAATGAAGCTGTGGTTGAAGAAGATTCAGTCAAGAGCAACAAAGAGGACATAAAAGGGTCCGAGAATAAAGATGAAGAAAAGTCTAAGAAACAGAACAGCATAACAAAAAAGAAAGAGAAACGGCAGAGGGAGCCCCGTTTTGCTTTCTTGACTAAGAGTGAGATTGATCACCTTGAAGATGGTTATAGATGGAGAAAATATGGTCAGAAAGCAGTTAAAAATAGTCCTTACCCCAGAAGCTACTACAGATGCACCAGCCAAAAATGTGTAGTGAAAAAACGAGTTGAAAGATCATATCAAGATCCATCTGTGGTGATTACTACATATGAAGGCCAACACAACCACCATTGCCCAGCTACACTCCGAGGCCATTCTGCAGGAATCATGTCATCTCCATTCTACGCACCAGCATCGACATCGGTAACGGCAGCCTCGTCGGGGCCTACGCTTCCTCAAGAACTCTTCTCGCATTTGTTACCGACGAATAACTGCCAAACCGACTCGACGTCGATGATGTACCAAAATCTAAGCCTTCAACAACACCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCAATCAAAAATAG 876 43.49 MSNDEGKNVYQQYDPFQYNQLDMNRSIFHQQSAALDPALMSFTNFFDTSLDYNSLSRAFDVSCCSSEVISPVDDMSKSKKASTTPNSSVSSSSNEAVVEEDSVKSNKEDIKGSENKDEEKSKKQNSITKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYAPASTSVTAASSGPTLPQELFSHLLPTNNCQTDSTSMMYQNLSLQQHLQMPDHYGLLQDLFNQK 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24630520 24632779 - Lsi11G016280.1 Lsi11g01628 674795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01628 291 MobiDBLite consensus disorder prediction 74 138 - -
Lsi11g01628 291 MobiDBLite consensus disorder prediction 100 138 - -
Lsi11g01628 291 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 14 289 - -
Lsi11g01628 291 Gene3D WRKY domain 135 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi11g01628 291 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 289 IPR044810 GO:0003700
Lsi11g01628 291 ProSiteProfiles WRKY domain profile. 146 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi11g01628 291 SMART WRKY_cls 151 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi11g01628 291 SUPERFAMILY WRKY DNA-binding domain 144 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi11g01628 291 MobiDBLite consensus disorder prediction 74 99 - -
Lsi11g01628 291 Pfam WRKY DNA -binding domain 152 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00176 Lsi-Chr1:1703437 Lsi11g01628 Lsi-Chr11:24630520 8.17E-62 dispersed
Lsi11g01628 Lsi-Chr11:24630520 Lsi04g00386 Lsi-Chr4:3802108 3.54E-17 dispersed
Lsi01g01080 Lsi-Chr1:8963004 Lsi11g01628 Lsi-Chr11:24630520 1.91E-12 transposed
Lsi01g01103 Lsi-Chr1:9097575 Lsi11g01628 Lsi-Chr11:24630520 4.81E-13 transposed
Lsi01g01436 Lsi-Chr1:12531135 Lsi11g01628 Lsi-Chr11:24630520 4.25E-22 transposed
Lsi03g00408 Lsi-Chr3:4656714 Lsi11g01628 Lsi-Chr11:24630520 6.39E-31 transposed
Lsi03g02255 Lsi-Chr3:33499183 Lsi11g01628 Lsi-Chr11:24630520 3.49E-15 transposed
Lsi05g01411 Lsi-Chr5:22051870 Lsi11g01628 Lsi-Chr11:24630520 5.84E-46 transposed
Lsi05g02073 Lsi-Chr5:27631218 Lsi11g01628 Lsi-Chr11:24630520 3.70E-11 transposed
Lsi05g02233 Lsi-Chr5:28881769 Lsi11g01628 Lsi-Chr11:24630520 2.30E-32 transposed
Lsi07g01483 Lsi-Chr7:21620276 Lsi11g01628 Lsi-Chr11:24630520 8.58E-35 transposed
Lsi08g00852 Lsi-Chr8:16950503 Lsi11g01628 Lsi-Chr11:24630520 9.48E-30 transposed
Lsi08g00885 Lsi-Chr8:17234479 Lsi11g01628 Lsi-Chr11:24630520 1.82E-47 transposed
Lsi10g00672 Lsi-Chr10:9336487 Lsi11g01628 Lsi-Chr11:24630520 3.14E-11 transposed
Lsi07g00019 Lsi-Chr7:255094 Lsi11g01628 Lsi-Chr11:24630520 1.43E-24 transposed
Lsi10g01539 Lsi-Chr10:19786197 Lsi11g01628 Lsi-Chr11:24630520 1.01E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26233 PF03106 WRKY 5.40E-25 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01628 - - csv:101211248 510.375