Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01637 ATGCAAAAAGTGGGGAAGTGTATGAGGGATTTGATTTGGGTAATTTTATTATGTTCCGTGGAGGATTCGGGAAGGAGCATAAGGAGGGATTGTGGGTTTGTGATCCGGAGCAGGGATTTCGTCTTCACTGTTCTCCAACCTGGGTTTGAGACTTTAAGGAAATGCAGACCGATCACCAATTCTGCAGAATTGGACTTTTTCTCTGAATATGGTGATGCCAACAGATTCAAAGTCCGGGAAGTTATTGGAAAGGGGAGTTATGGTGTGGTTTGTTCAGCTGTTGACACTCTCACAAATGAAAAAGTAGCAATAAAGAAGATACATGATATTTTTGAACATGTATCTGATGCTGCCCGGATTCTTCGTGAGATAAAGCTGCTCAGGCTTCTACGTCATCCCGATATTGTTGAAATTAAACACATTATGTTACCACCTTCTCGTAGGGGGTTCAAAGATATTTTTGTTGTGTTTGAGTTGATGGAATCAGATTTGCATCAAGTCATCAAGGCTAATGATGATTTAACAAAAGAGCACTATCAATTTTTCCTCTACCAGCTACTCCGTGCACTGAAATATATTCACACAGCAAATGTCTACCATCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAATCTGTGATTTTGGATTGGCTAGAGTTGCTTTCAGTGACACCCCAACAACAATATTTTGGACGGACTATGTTGCTACTAGATGGTATAGGGCTCCAGAGCTATGTGGTTCTTTCTTCTCTAAGTATACTCCCGCCATTGACATTTGGAGTATTGGCTGCATTTTTGCTGAAGTACTGACTGGGAAACCACTTTTTCCCGGTAAAAATATTGTTCATCAGCTTGATTTGATGACAGATCTACTTGGAACGCCTTCATTAGATACCATTTCTCGGGTAAGAAATGATAAGGCCAGGAGGTACTTAACTAGTATGAGGAAGAAGCAGCCCATACCCTTTTCACAGAAGTTCCCAAATGCTGATCCTCTAGCTCTGCAATTACTACAACGATTGCTTGCCTTTGATCCAAAGGATCGACCTACTGCTGGAGAGATCAAATCTATAAATTGTTGTTCTTCTAATGCTCTTCGAACTTTAAAATTAATTGCATGTGCCAACATGTTGAAAACCACTTGCCTTCAGGCTTTGGCAGATCCTTACTTTAAGGGGCTGTCAAAAGTTGAGAGGGAACCTTCTTGCCAGCCAATCTCAAAGGTGGAGTTTGAATTTGAGAGGAGAAAGGTCACGAAGGATGACATTCGCGAGCTGATATTCCTCGAGATACTTGAATACCATCCTCAACTGCTGAAAGACTATTTAAATGGAACTGAGAGATCAAATTTTCTTTATCCAAGTGCACTAGATCAGTTCAAAAAGCAATTTGCTCATCTTGAAGATAATGGAGGGAAAAGTGGACCAGTTTATCCTCTAGAAAGGAAACATACATCTCTTCCTAGGTCTTCAGTACAGTCAAATACCATTCCTCCTAAAGCAACATCAAATATTGTTTCCTTGAAAGACCGATATGCGCCAGCAGGTTCATTCAGCAGTCAGCATTACAGAGATCCAGCAGCACAGAGGATTGCTGCAGCTCAAGCCAAGCCTGGAAGAATCTCGGGCCCGGTCATGCCATATGACAGTGGAAGTATTGTTAAAGATGCCTACGATCCAAGAATGTTAATTAGAAGTGCCCTCCCTTCTCATGCTATCCATCCAAAATATTATTATCAGCAATCTTGCGGCCAAAATGAAGAAAGATCAGCAACAGGGGCTGAGCAGGACACATCCTTGCAATGTAAACAATCCCCTCAATGTGGAATGGCTGCCAAATTAGCAGGAGATACAGCTGCTACTGGTGCTTTCTCAAATCCTTTCTTTATGGCGCGTGTAGGCATGCCCAAGATTGGAAACAATGACCGTGCTGCACGTATGCAGGTAAGCACTCAATATGATGCTGGAGCTGTTGCTGCTGCAACTACCACCACCCATCGAAACACTGGCACAGTCGAGTATGGCATGACAAGAATGTGTTAG 2061 41.97 MQKVGKCMRDLIWVILLCSVEDSGRSIRRDCGFVIRSRDFVFTVLQPGFETLRKCRPITNSAELDFFSEYGDANRFKVREVIGKGSYGVVCSAVDTLTNEKVAIKKIHDIFEHVSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRGFKDIFVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNIVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPIPFSQKFPNADPLALQLLQRLLAFDPKDRPTAGEIKSINCCSSNALRTLKLIACANMLKTTCLQALADPYFKGLSKVEREPSCQPISKVEFEFERRKVTKDDIRELIFLEILEYHPQLLKDYLNGTERSNFLYPSALDQFKKQFAHLEDNGGKSGPVYPLERKHTSLPRSSVQSNTIPPKATSNIVSLKDRYAPAGSFSSQHYRDPAAQRIAAAQAKPGRISGPVMPYDSGSIVKDAYDPRMLIRSALPSHAIHPKYYYQQSCGQNEERSATGAEQDTSLQCKQSPQCGMAAKLAGDTAATGAFSNPFFMARVGMPKIGNNDRAARMQVSTQYDAGAVAAATTTTHRNTGTVEYGMTRMC 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24708069 24712622 + Lsi11G016370.1 Lsi11g01637 674804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01637 686 ProSitePatterns Protein kinases ATP-binding region signature. 82 106 IPR017441 GO:0005524
Lsi11g01637 686 Gene3D Phosphorylase Kinase; domain 1 91 161 - -
Lsi11g01637 686 Gene3D Phosphorylase Kinase; domain 1 421 443 - -
Lsi11g01637 686 SUPERFAMILY Protein kinase-like (PK-like) 73 363 IPR011009 -
Lsi11g01637 686 Gene3D Transferase(Phosphotransferase) domain 1 370 420 - -
Lsi11g01637 686 Gene3D Transferase(Phosphotransferase) domain 1 162 360 - -
Lsi11g01637 686 ProSiteProfiles Protein kinase domain profile. 76 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01637 686 SMART serkin_6 76 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01637 686 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 60 360 - -
Lsi11g01637 686 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 377 560 - -
Lsi11g01637 686 ProSitePatterns MAP kinase signature. 111 214 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lsi11g01637 686 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 60 360 - -
Lsi11g01637 686 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 377 560 - -
Lsi11g01637 686 Pfam Protein kinase domain 77 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01637 686 CDD STKc_TDY_MAPK 75 442 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g01555 Lsi11g01637 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00868 Lsi-Chr7:9830816 Lsi11g01637 Lsi-Chr11:24708069 0 dispersed
Lsi09g01365 Lsi-Chr9:21696552 Lsi11g01637 Lsi-Chr11:24708069 0 dispersed
Lsi11g01637 Lsi-Chr11:24708069 Lsi09g00226 Lsi-Chr9:2368024 1.90E-109 dispersed
Lsi10g01541 Lsi-Chr10:19818071 Lsi11g01637 Lsi-Chr11:24708069 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84059 PF00069 Pkinase 4.50E-64 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01637 - K04371 csv:101214068 1098.57