Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01637 | ATGCAAAAAGTGGGGAAGTGTATGAGGGATTTGATTTGGGTAATTTTATTATGTTCCGTGGAGGATTCGGGAAGGAGCATAAGGAGGGATTGTGGGTTTGTGATCCGGAGCAGGGATTTCGTCTTCACTGTTCTCCAACCTGGGTTTGAGACTTTAAGGAAATGCAGACCGATCACCAATTCTGCAGAATTGGACTTTTTCTCTGAATATGGTGATGCCAACAGATTCAAAGTCCGGGAAGTTATTGGAAAGGGGAGTTATGGTGTGGTTTGTTCAGCTGTTGACACTCTCACAAATGAAAAAGTAGCAATAAAGAAGATACATGATATTTTTGAACATGTATCTGATGCTGCCCGGATTCTTCGTGAGATAAAGCTGCTCAGGCTTCTACGTCATCCCGATATTGTTGAAATTAAACACATTATGTTACCACCTTCTCGTAGGGGGTTCAAAGATATTTTTGTTGTGTTTGAGTTGATGGAATCAGATTTGCATCAAGTCATCAAGGCTAATGATGATTTAACAAAAGAGCACTATCAATTTTTCCTCTACCAGCTACTCCGTGCACTGAAATATATTCACACAGCAAATGTCTACCATCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAATCTGTGATTTTGGATTGGCTAGAGTTGCTTTCAGTGACACCCCAACAACAATATTTTGGACGGACTATGTTGCTACTAGATGGTATAGGGCTCCAGAGCTATGTGGTTCTTTCTTCTCTAAGTATACTCCCGCCATTGACATTTGGAGTATTGGCTGCATTTTTGCTGAAGTACTGACTGGGAAACCACTTTTTCCCGGTAAAAATATTGTTCATCAGCTTGATTTGATGACAGATCTACTTGGAACGCCTTCATTAGATACCATTTCTCGGGTAAGAAATGATAAGGCCAGGAGGTACTTAACTAGTATGAGGAAGAAGCAGCCCATACCCTTTTCACAGAAGTTCCCAAATGCTGATCCTCTAGCTCTGCAATTACTACAACGATTGCTTGCCTTTGATCCAAAGGATCGACCTACTGCTGGAGAGATCAAATCTATAAATTGTTGTTCTTCTAATGCTCTTCGAACTTTAAAATTAATTGCATGTGCCAACATGTTGAAAACCACTTGCCTTCAGGCTTTGGCAGATCCTTACTTTAAGGGGCTGTCAAAAGTTGAGAGGGAACCTTCTTGCCAGCCAATCTCAAAGGTGGAGTTTGAATTTGAGAGGAGAAAGGTCACGAAGGATGACATTCGCGAGCTGATATTCCTCGAGATACTTGAATACCATCCTCAACTGCTGAAAGACTATTTAAATGGAACTGAGAGATCAAATTTTCTTTATCCAAGTGCACTAGATCAGTTCAAAAAGCAATTTGCTCATCTTGAAGATAATGGAGGGAAAAGTGGACCAGTTTATCCTCTAGAAAGGAAACATACATCTCTTCCTAGGTCTTCAGTACAGTCAAATACCATTCCTCCTAAAGCAACATCAAATATTGTTTCCTTGAAAGACCGATATGCGCCAGCAGGTTCATTCAGCAGTCAGCATTACAGAGATCCAGCAGCACAGAGGATTGCTGCAGCTCAAGCCAAGCCTGGAAGAATCTCGGGCCCGGTCATGCCATATGACAGTGGAAGTATTGTTAAAGATGCCTACGATCCAAGAATGTTAATTAGAAGTGCCCTCCCTTCTCATGCTATCCATCCAAAATATTATTATCAGCAATCTTGCGGCCAAAATGAAGAAAGATCAGCAACAGGGGCTGAGCAGGACACATCCTTGCAATGTAAACAATCCCCTCAATGTGGAATGGCTGCCAAATTAGCAGGAGATACAGCTGCTACTGGTGCTTTCTCAAATCCTTTCTTTATGGCGCGTGTAGGCATGCCCAAGATTGGAAACAATGACCGTGCTGCACGTATGCAGGTAAGCACTCAATATGATGCTGGAGCTGTTGCTGCTGCAACTACCACCACCCATCGAAACACTGGCACAGTCGAGTATGGCATGACAAGAATGTGTTAG | 2061 | 41.97 | MQKVGKCMRDLIWVILLCSVEDSGRSIRRDCGFVIRSRDFVFTVLQPGFETLRKCRPITNSAELDFFSEYGDANRFKVREVIGKGSYGVVCSAVDTLTNEKVAIKKIHDIFEHVSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRGFKDIFVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNIVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPIPFSQKFPNADPLALQLLQRLLAFDPKDRPTAGEIKSINCCSSNALRTLKLIACANMLKTTCLQALADPYFKGLSKVEREPSCQPISKVEFEFERRKVTKDDIRELIFLEILEYHPQLLKDYLNGTERSNFLYPSALDQFKKQFAHLEDNGGKSGPVYPLERKHTSLPRSSVQSNTIPPKATSNIVSLKDRYAPAGSFSSQHYRDPAAQRIAAAQAKPGRISGPVMPYDSGSIVKDAYDPRMLIRSALPSHAIHPKYYYQQSCGQNEERSATGAEQDTSLQCKQSPQCGMAAKLAGDTAATGAFSNPFFMARVGMPKIGNNDRAARMQVSTQYDAGAVAAATTTTHRNTGTVEYGMTRMC | 686 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 24708069 | 24712622 | + | Lsi11G016370.1 | Lsi11g01637 | 674804 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01637 | 686 | ProSitePatterns | Protein kinases ATP-binding region signature. | 82 | 106 | IPR017441 | GO:0005524 | |
Lsi11g01637 | 686 | Gene3D | Phosphorylase Kinase; domain 1 | 91 | 161 | - | - | |
Lsi11g01637 | 686 | Gene3D | Phosphorylase Kinase; domain 1 | 421 | 443 | - | - | |
Lsi11g01637 | 686 | SUPERFAMILY | Protein kinase-like (PK-like) | 73 | 363 | IPR011009 | - | |
Lsi11g01637 | 686 | Gene3D | Transferase(Phosphotransferase) domain 1 | 370 | 420 | - | - | |
Lsi11g01637 | 686 | Gene3D | Transferase(Phosphotransferase) domain 1 | 162 | 360 | - | - | |
Lsi11g01637 | 686 | ProSiteProfiles | Protein kinase domain profile. | 76 | 372 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01637 | 686 | SMART | serkin_6 | 76 | 364 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01637 | 686 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 60 | 360 | - | - | |
Lsi11g01637 | 686 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 377 | 560 | - | - | |
Lsi11g01637 | 686 | ProSitePatterns | MAP kinase signature. | 111 | 214 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Lsi11g01637 | 686 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 60 | 360 | - | - | |
Lsi11g01637 | 686 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 377 | 560 | - | - | |
Lsi11g01637 | 686 | Pfam | Protein kinase domain | 77 | 362 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi11g01637 | 686 | CDD | STKc_TDY_MAPK | 75 | 442 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi10g01555 | Lsi11g01637 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g00868 | Lsi-Chr7:9830816 | Lsi11g01637 | Lsi-Chr11:24708069 | 0 | dispersed | |
Lsi09g01365 | Lsi-Chr9:21696552 | Lsi11g01637 | Lsi-Chr11:24708069 | 0 | dispersed | |
Lsi11g01637 | Lsi-Chr11:24708069 | Lsi09g00226 | Lsi-Chr9:2368024 | 1.90E-109 | dispersed | |
Lsi10g01541 | Lsi-Chr10:19818071 | Lsi11g01637 | Lsi-Chr11:24708069 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84059 | PF00069 | Pkinase | 4.50E-64 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01637 | - | K04371 | csv:101214068 | 1098.57 |