Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01644 ATGGGATCTCCAACAGTGGTTGTAAATGGAGCTGAAGCCAATAGATTTTTCTTGTCAAATGAGTTTAAGTTAGTGGTAAGTTCATGGCCATCGGGCTCTGTTCAGTTGATGGGTGAAGAATGCATTATGCAAAAGCAAGGTGAAAGGCACAGATTTGTGCGTGCTCTTATTGCTGCAAGTCTTTCTACTTCGAGTCTTGAAGTTATGATGCCTAAATTGTGCAATACAATTCAGGTTTATTTGGACACTAAATGGGTTGGTTGTGACACAATTGGTCTCTTCCACTCTGCTAAAGTATTGACATTTACCATAGTGTTCGAGTGTTTGATGGGTATTAAAGTCGAGCCACGTGTGTTGACGACATTCGAGAGAGTTTTGGAAGGCGTTTTTGCACCACCATTCAGGTTTCCAGGTACAAGGTTTTCAAGAGCCAAGAAAGCAAGGTTGGAGATAGAGAAAATGCTATGGGAAGTGGTGACAGAGAAGAGGAGGAGAATTGAAGGAAAGTTAGAAGAAGAAGAAGAAGAATGTGGGACATTGCTTTCAAGGATGGTAAGAGCAATGATAAGAGGGGAGATCAGTGAAATGGAAGTCATAGACAATGTGGTTTTGCTTGTTTTTGCAGCTCATGATACAACTTCCTTTGCCATTGCCATGACTTTCAAAATGTTAGCTCAACATTCAAACTGCTACCCACTTCTTCTCCAGGAACACACTGACATAGCGAGAAGCAAGGGACCAAGCCAGAATTTGACGATGGAAGATATAAAGAAGATGAAATATACTTGGCAGATAGCTCGTGAGAGCATTAGACTCTTTCCCCCTATATTTGGTTCGTTCAGAAAAGCCATTTCAGACATTGAATATGAGAGATTTTTCATTCCCAAAGGATGGAAGGTGAAAATTTCAATCAATTCTTCTGCTGCTTCTTTACATCAGTTGATACCCTACAATCAATCTGTTGTGTTCAGAAATGATCATCGTTTTACCTCGAATCATTTTGGTTGCATGCAGGTCTTGTGGACGACGTATGGAACACATTACGAAGAAGAGTACTTCGAAGATCCATTGAGTTTCAAGCCAAGCAGATTTGAGGAACCTGTTTCCCAGTATGTTTATGTTCCATTTGGAGGAGGGCCAAGAGCTTGTGCAGGCTACCAGCTGGCGAAATTGAACATCCTCGTCTTTATACACTTGGTTGTAACTCGTTATGATTGGAGTTTAGTCCACACAGATGAGCCAATCATAATGGATCCTCTCCCTGTCCCTTCTCATGGAATGCCAATTAAGATTTCTCCAAAATCAGAAGTTTGTCCCAATGTTCTCCAAATGTAA 1335 41.05 MGSPTVVVNGAEANRFFLSNEFKLVVSSWPSGSVQLMGEECIMQKQGERHRFVRALIAASLSTSSLEVMMPKLCNTIQVYLDTKWVGCDTIGLFHSAKVLTFTIVFECLMGIKVEPRVLTTFERVLEGVFAPPFRFPGTRFSRAKKARLEIEKMLWEVVTEKRRRIEGKLEEEEEECGTLLSRMVRAMIRGEISEMEVIDNVVLLVFAAHDTTSFAIAMTFKMLAQHSNCYPLLLQEHTDIARSKGPSQNLTMEDIKKMKYTWQIARESIRLFPPIFGSFRKAISDIEYERFFIPKGWKVKISINSSAASLHQLIPYNQSVVFRNDHRFTSNHFGCMQVLWTTYGTHYEEEYFEDPLSFKPSRFEEPVSQYVYVPFGGGPRACAGYQLAKLNILVFIHLVVTRYDWSLVHTDEPIIMDPLPVPSHGMPIKISPKSEVCPNVLQM 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24754154 24756360 - Lsi11G016440.1 Lsi11g01644 674811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01644 444 Pfam Cytochrome P450 2 306 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01644 444 Pfam Cytochrome P450 338 419 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01644 444 PRINTS E-class P450 group I signature 383 406 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01644 444 PRINTS E-class P450 group I signature 197 214 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01644 444 PRINTS E-class P450 group I signature 373 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01644 444 PRINTS E-class P450 group I signature 342 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01644 444 SUPERFAMILY Cytochrome P450 2 305 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01644 444 PRINTS P450 superfamily signature 374 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01644 444 PRINTS P450 superfamily signature 383 394 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01644 444 PRINTS P450 superfamily signature 264 275 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01644 444 PRINTS P450 superfamily signature 208 225 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01644 444 PANTHER TAXADIENE 5-ALPHA HYDROXYLASE 337 433 - -
Lsi11g01644 444 PANTHER TAXADIENE 5-ALPHA HYDROXYLASE 1 305 - -
Lsi11g01644 444 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 376 385 IPR017972 GO:0005506|GO:0016705
Lsi11g01644 444 Coils Coil 156 183 - -
Lsi11g01644 444 SUPERFAMILY Cytochrome P450 338 434 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi11g01644 444 PANTHER CYTOCHROME P450 26 337 433 - -
Lsi11g01644 444 PANTHER CYTOCHROME P450 26 1 305 - -
Lsi11g01644 444 Gene3D Cytochrome P450 1 434 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01257 Lsi-Chr6:23155590 Lsi11g01644 Lsi-Chr11:24754154 3.53E-56 dispersed
Lsi11g01644 Lsi-Chr11:24754154 Lsi07g00205 Lsi-Chr7:2230672 7.32E-50 dispersed
Lsi11g01644 Lsi-Chr11:24754154 Lsi04g01563 Lsi-Chr4:23194296 1.16E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01644 - - csv:101220115 700.664