Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01653 ATGGCGGCCAAATCTGTATTTCAAAATCGAATCAGAGCCAAACTTCATATCTTCTATGCAATTCTTCTGCTGCAGTTTGCTACCTACGGATTGGCAGCCACAGCCAAGCTTCATCGAGAAGAAGTGAAAGCGTTGAAAGAGATCGAGAAGAAAATAGGGAAGAACGATTGGAATTTTAGCGTAGATCCTTGCAGTGGAGAAGGAAAATGGCGAGTCGTTGATGGAAGAAAAGGATTCGAAAGCTCCGTCACCTGTGATTGCTCTTTCAACCACAACTCCACTTGCCATGTCGTCGCCATGTCAAATTGTTTAGGAGATTTATCCACGCTCCGCATGGAGCGTTGCAATGACGGAGCTTCGCGGCTGCCTCTGTTGATATTGATATCGTCGGAGTTGGATTTTGATGTTGATACTGTTGTTTTCCTGTTGGAGTTTCTGAATCTCTGGTTAGCTCTGAAGTCCCAGAATCTATCAGGCATTGTGCCACCAGAGTTTTCCAAGCTTCGCTTCCTCAAACAGCTAGACCTCAGTCGAAACTGTCTCACTGGTTCTATTCCTTCACAATGGGCTACCATGCGATTGGTAGAACTCTCTTTCATGGGAAACAAATTGTCCGGCCCATTCCCGAAAGTTCTTACTAACATCACCACCCTCAGAAATCTGAGCATCGAAGGAAATCAATTTTCTGGTCGAATTCCACCAGAGGTTGGAAAACTAGTTAATTTGGAAAAATTAGTTCTGTCATCAAATGGCCTCACCGGAGAATTGCCTAAAGCACTAGCGAAATTGTCGAACTTAACTGATATGAGGATAAGTGACAACAACTTCTCTGGAAAGATACCTGAGTTCATTAGTAATTGGGCACAGATTGAAAAACTGCATATACAAGGCTGCTCCCTCGAGGGGCCCATACCCTTAAGTATCTCCGCCATGACAAGTTTAACTGATCTGAGAATATCTGACTTAAAAGGTGGAAGGTCTTCTTTTCCGTCGTTGAGCAAAATGAAATCCCTGAAGACTCTGATACTGAGGAAGTGCTTGATTTTTGGAGAAATCCCGAAATACATTGGGGACATGAAAAAATTGAAAAACTTAGACCTCAGTTACAATGAGTTGACTGGCGAAGTTCCTGCATCTTTAGAACGACTGGAAAAAATAGATTACATGGATCTTTCTAACAACAACTTCACTTGGGAAAACTCAAGCCCAGCTGAGTGTCCTCGTGATCACTACTCCTTGCACATTAACTGTGGCGGTAAAGAAGCATTTGTTAGGGGTGAAAGGTATGAAGCGGATAGAGAAGGTGCTTCAATGTTTTATACTGGTCAGAATTGGGCTTTTAGCAGCACAGGAAGCTTTATGGACAATGATGTTGATGCTGATAACTACATCATAACAAATACATCTGCTCTTTCAAATGTCTCTGTGACTGACTCAGAACTGTACACAAAAGCGAGAAACTCTCCTCAATCTCTTACATACTATGGGCTATGTCTCATAAATGGGAATTATACTGTTAAACTCCACTTTGCAGAGATTGTATTTATAAATGACAGTTCATTCAACAGCCTGGGGAGGCGAGTTTTTGATGTGTACATTCAGGAAAAGCTAGTCCTGAAAGATTTTGATATAGAACATGAAGCAGGAGGTACAGGGAAGCCCATTATAAAAACATTTACTGCAGTTGTCACAAGTCATACATTGAAGATCCATTTCTACTGGGCTGGAAGAGGAACAACAGGAATTCCACTTAGAGGAAATTATGGTCCTCTGATATCTGCTATTTCTGTAGATCCCACAGCAGCAGCAGCAGCTTTTGTTCTCCTTCTTCTGGTGCTATGTATTATGAGGAGGAACGGATGCCTGGGAGGCAAGGCATCCGTATATAAAGAGCTTAGAGGTATAGATCTGCAAACAGGATTATTTACAATAAGACAGATTAAAGCAGCCACTAAAAATTTTGATGCTGCAAACAAAGTTGGGGAAGGTGGTTTTGGTGCAGTTTACAAGGGTCTTTTGTCAGATGGTACTATAATTGCAGTCAAGCAGCTCTCATCAAAATCAAAGCAAGGAAATCGAGAATTTGTTAATGAAATAGGCATGATATCCGCACTGCAACATCCAAATCTTGTCAAGCTTTATGGATGCTGTGTTGATGGGAACCAACTAATGTTGATTTATGAATACATGGAAAATAATTGCTTATCACGTGCCCTTTTCAGAAATGACCCAGCTTCTAAATTGAGATTGGACTGGCCCACCAGGCAGAAAATTTGTCTGGGAATAGCTAGAGGTTTGGCCTATCTGCATGAGGAGTCAAGACTAAAAATCGTACATAGGGATATCAAGACAAGTAATGTGTTGCTTGATAAGGATTTCAATGCTAAAATTTCTGATTTTGGCTTGGCTAAGCTTCATGAAGATGACAATACCCATATCAGCACTAGAGTTGCCGGAACCATAGGTTATATGGCTCCTGAATATGCAATGCGTGGATGCTTGACCTGCAAAGCTGATGTTTATAGCTTTGGAGTTGTTGCTCTGGAAATTGTCAGTGGCAAAAGCAATACCAACTACAGGCCTAAAGAGGATTTTGTTTACCTTCTTGATTGGGCATCTGTTCTGCAAGAAAAAGGAAGCCTATTGGAGTTGGTGGATCCAGCCTTGGGCTCAGATTATTCATCAGAAGAAGCAATGGTGATGCTGAATGTGGCTCTCCTCTGCACCAACGCATCCCCAACTCTGCGGCCTCTAATGTCCCAAGTCGTCAGCATGCTCGAAGGTCGAACTCCAGTCCAAGCACTTCTTTCTGACCCAGGATTTTCAGCCATCAATTCCAAATTGAAGGCTCTCAGAAATCACTTTTGGCAACAATTGAGCCCGACTCGCAGTTTATCATTGGACGATTTCCCTAGTGATTCCTTGAGTTCGAATGTGGACCTGGAGGCAGAAGAGAATTACAATCTTGTAAGACCCCATTCTGTTAACATGACTGGAACAAATTAG 3006 42.15 MAAKSVFQNRIRAKLHIFYAILLLQFATYGLAATAKLHREEVKALKEIEKKIGKNDWNFSVDPCSGEGKWRVVDGRKGFESSVTCDCSFNHNSTCHVVAMSNCLGDLSTLRMERCNDGASRLPLLILISSELDFDVDTVVFLLEFLNLWLALKSQNLSGIVPPEFSKLRFLKQLDLSRNCLTGSIPSQWATMRLVELSFMGNKLSGPFPKVLTNITTLRNLSIEGNQFSGRIPPEVGKLVNLEKLVLSSNGLTGELPKALAKLSNLTDMRISDNNFSGKIPEFISNWAQIEKLHIQGCSLEGPIPLSISAMTSLTDLRISDLKGGRSSFPSLSKMKSLKTLILRKCLIFGEIPKYIGDMKKLKNLDLSYNELTGEVPASLERLEKIDYMDLSNNNFTWENSSPAECPRDHYSLHINCGGKEAFVRGERYEADREGASMFYTGQNWAFSSTGSFMDNDVDADNYIITNTSALSNVSVTDSELYTKARNSPQSLTYYGLCLINGNYTVKLHFAEIVFINDSSFNSLGRRVFDVYIQEKLVLKDFDIEHEAGGTGKPIIKTFTAVVTSHTLKIHFYWAGRGTTGIPLRGNYGPLISAISVDPTAAAAAFVLLLLVLCIMRRNGCLGGKASVYKELRGIDLQTGLFTIRQIKAATKNFDAANKVGEGGFGAVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCVDGNQLMLIYEYMENNCLSRALFRNDPASKLRLDWPTRQKICLGIARGLAYLHEESRLKIVHRDIKTSNVLLDKDFNAKISDFGLAKLHEDDNTHISTRVAGTIGYMAPEYAMRGCLTCKADVYSFGVVALEIVSGKSNTNYRPKEDFVYLLDWASVLQEKGSLLELVDPALGSDYSSEEAMVMLNVALLCTNASPTLRPLMSQVVSMLEGRTPVQALLSDPGFSAINSKLKALRNHFWQQLSPTRSLSLDDFPSDSLSSNVDLEAEENYNLVRPHSVNMTGTN 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24830084 24841433 - Lsi11G016530.1 Lsi11g01653 674820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01653 1001 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE-RELATED 124 349 - -
Lsi11g01653 1001 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE-RELATED 409 974 - -
Lsi11g01653 1001 SUPERFAMILY L domain-like 149 397 - -
Lsi11g01653 1001 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE-RELATED 350 397 - -
Lsi11g01653 1001 Pfam Malectin domain 412 595 IPR021720 -
Lsi11g01653 1001 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 350 397 - -
Lsi11g01653 1001 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 409 974 - -
Lsi11g01653 1001 ProSitePatterns Protein kinases ATP-binding region signature. 660 682 IPR017441 GO:0005524
Lsi11g01653 1001 Gene3D - 408 599 - -
Lsi11g01653 1001 CDD STKc_IRAK 660 928 - -
Lsi11g01653 1001 Pfam Protein tyrosine and serine/threonine kinase 657 869 IPR001245 GO:0004672|GO:0006468
Lsi11g01653 1001 Pfam Leucine rich repeat 337 396 IPR001611 GO:0005515
Lsi11g01653 1001 Gene3D Phosphorylase Kinase; domain 1 625 729 - -
Lsi11g01653 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Lsi11g01653 1001 ProSiteProfiles Protein kinase domain profile. 654 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01653 1001 Gene3D Ribonuclease Inhibitor 72 405 IPR032675 -
Lsi11g01653 1001 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 124 349 - -
Lsi11g01653 1001 SMART serkin_6 654 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi11g01653 1001 Gene3D Transferase(Phosphotransferase) domain 1 730 935 - -
Lsi11g01653 1001 SUPERFAMILY Protein kinase-like (PK-like) 639 927 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00542 Lsi-Chr2:4701911 Lsi11g01653 Lsi-Chr11:24830084 3.50E-61 dispersed
Lsi04g01985 Lsi-Chr4:26916892 Lsi11g01653 Lsi-Chr11:24830084 0 dispersed
Lsi04g01986 Lsi-Chr4:26937585 Lsi11g01653 Lsi-Chr11:24830084 2.71E-46 dispersed
Lsi07g00293 Lsi-Chr7:3155917 Lsi11g01653 Lsi-Chr11:24830084 0 dispersed
Lsi11g01613 Lsi-Chr11:24461212 Lsi11g01653 Lsi-Chr11:24830084 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84060 PF07714 PK_Tyr_Ser-Thr 3.00E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01653 - - csv:101219400 1706.42