Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01661 ATGAGGAAGAGGGAAAGAGAGAACCCTTGTGGGGTTTGTGGCCATTATCACAAATACGAAGAAGGGGAAGTTTGTGGGATTTGTGGTCATCGGGTTCCCGCTACGTCGGAGAAAACTTCGTTGCAAGTTAGTGCGTTTCCTTCTGAGATCTTGCCGGAGTTTCTTTATTTGGGAAGTTATGATAACGCTTCACGCTCTGAACTTTTGAAGACTCAAGGAATCTCCCGCGTTCTTAACTTGACCATTGATGTTAAAATTATTGTAGGACTTCTGTCTGCAAAGATGGGTTCTGGTTCTCTGTTTCAGCTTCATGGTACAGTGCCTGCTTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATATGATAAGACTTTACCTTTTGATGATGCGGTTGAATTTCTAGAGCTATGCGAAAGAGACAAGGCTCGGGTTCTGGTGCACTGCATGTCAGGAAAAAATAGGTCTCCAGCTATTGTTATAGCGTTCTTGATGAAATGTAAAGGTTGGAGACTTGCTCAGAGTTATCAGTGGGTGAAAGAGCGGAGGCCATCGGTCGACTTAACTGAACCTGTCTATCAGCAACTGCAAGAGTATGAGCGGAAGGTTTTTGGATTAGCAGAAAACTCCCTCCCAACCCTGCCAATCTTCCCTCCTGTTGGTCCGCCTTCTTTTAGCTTCGGCTTCCCAAAGACTGGTGACCCAGTTCCTACAACTCCATTCAACAGCCTCGGTGCAGCATCGATCTTCTCCCGCCCGACCATAGATGTACCTTCCCACGAATTTACATTTGGTGCTGGCCAAACTCAAAACAGTTTCTCTGCTAGCCCCTTCGGTGCTAATCCACGGAACTCAACCAGCAGCAACATCCAAATGGACAGTGCTTAA 897 46.15 MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPATSEKTSLQVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNLTIDVKIIVGLLSAKMGSGSLFQLHGTVPACQNLYKNSFTYHCLQYDKTLPFDDAVEFLELCERDKARVLVHCMSGKNRSPAIVIAFLMKCKGWRLAQSYQWVKERRPSVDLTEPVYQQLQEYERKVFGLAENSLPTLPIFPPVGPPSFSFGFPKTGDPVPTTPFNSLGAASIFSRPTIDVPSHEFTFGAGQTQNSFSASPFGANPRNSTSSNIQMDSA 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24894389 24897635 + Lsi11G016610.1 Lsi11g01661 674828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01661 298 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 103 297 - -
Lsi11g01661 298 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 80 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Lsi11g01661 298 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 208 IPR020422 GO:0006470|GO:0008138
Lsi11g01661 298 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 207 IPR029021 -
Lsi11g01661 298 SMART dsp_5 46 205 IPR020422 GO:0006470|GO:0008138
Lsi11g01661 298 MobiDBLite consensus disorder prediction 276 298 - -
Lsi11g01661 298 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 197 IPR000387 GO:0016311|GO:0016791
Lsi11g01661 298 Gene3D Protein tyrosine phosphatase superfamily 30 208 IPR029021 -
Lsi11g01661 298 Pfam Dual specificity phosphatase, catalytic domain 55 204 IPR000340 GO:0008138|GO:0016311
Lsi11g01661 298 ProSitePatterns Tyrosine specific protein phosphatases active site. 150 160 IPR016130 GO:0016311|GO:0016791
Lsi11g01661 298 CDD DSP_plant_IBR5-like 47 202 - -
Lsi11g01661 298 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 80 - -
Lsi11g01661 298 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 103 297 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01355 Lsi-Chr9:21512137 Lsi11g01661 Lsi-Chr11:24894389 4.68E-11 dispersed
Lsi11g00210 Lsi-Chr11:2164830 Lsi11g01661 Lsi-Chr11:24894389 2.05E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01661 K04459 - csv:101211000 502.286