Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01667 ATGCGGCGAGGTAGAGCCACGGATCCATTGACGGCGGCAGAAACAGGCCAAGAACCTGTTAAAGAAGTGCGATTCAGAGGCGTTAGGAAGCGTCCATGGGGCCGATACGCCGCCGAGATTAGAGATCCCTGGAAGAAGACCCGAGTTTGGCTCGGCACCTTCGACACGGCGGAGGATGCTGCCAGAGCTTACGATGAGGCCGCTCTCTCTCTCCGGGGACCGAAGGCGAAAACGAACTTCCCGTTGCATCCATCCACTATCTCTGTTCATCAGCAAATTCCATTCTCGCAGGAGTTTCATGATTCCGGTGGATTCTGCAAGATTAGTAACATTCCAGTTAATAGGCCTACATCGAGTAGTCTGAGCTCCACCGTGGAGTCTTTTAGCGGGCCGCGGGTTTCGATTCCGGCTCCATCGGTTCCGAAGCTCCGCCAGAAGTCCCTGCCGCAGGTCTCGCCCGACGATTGCCATAGCGACTGTGATTCGTCGTCCTCGGTTGTTGATGACAGTGAGGAATATGCTCACACGTCGTCAATTCGCAGAGTGTTGCCGTTCGATCTGAATCTACCTCCTCCACTGCCGCCGCCGCCGCATGACGTCGATTTATCCGCTGATGATCTTCATGCCACTGCTCTGTGTTTTTGA 645 55.04 MRRGRATDPLTAAETGQEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDAARAYDEAALSLRGPKAKTNFPLHPSTISVHQQIPFSQEFHDSGGFCKISNIPVNRPTSSSLSSTVESFSGPRVSIPAPSVPKLRQKSLPQVSPDDCHSDCDSSSSVVDDSEEYAHTSSIRRVLPFDLNLPPPLPPPPHDVDLSADDLHATALCF 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24921770 24922414 - Lsi11G016670.1 Lsi11g01667 674834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01667 214 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Lsi11g01667 214 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Lsi11g01667 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 17 186 - -
Lsi11g01667 214 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677
Lsi11g01667 214 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Lsi11g01667 214 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Lsi11g01667 214 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Lsi11g01667 214 MobiDBLite consensus disorder prediction 116 130 - -
Lsi11g01667 214 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 186 - -
Lsi11g01667 214 MobiDBLite consensus disorder prediction 116 173 - -
Lsi11g01667 214 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Lsi11g01667 214 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g01565 Lsi11g01667 CCT
Lsi10g01565 Lsi11g01667 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00571 Lsi-Chr5:7088026 Lsi11g01667 Lsi-Chr11:24921770 6.39E-43 dispersed
Lsi11g01667 Lsi-Chr11:24921770 Lsi11g01709 Lsi-Chr11:25236694 1.12E-30 dispersed
Lsi02g01460 Lsi-Chr2:20305317 Lsi11g01667 Lsi-Chr11:24921770 3.01E-20 transposed
Lsi10g01565 Lsi-Chr10:20065741 Lsi11g01667 Lsi-Chr11:24921770 1.25E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26234 PF00847 AP2 6.20E-15 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01667 K09286 - csv:101210265 332.798