Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01667 | ATGCGGCGAGGTAGAGCCACGGATCCATTGACGGCGGCAGAAACAGGCCAAGAACCTGTTAAAGAAGTGCGATTCAGAGGCGTTAGGAAGCGTCCATGGGGCCGATACGCCGCCGAGATTAGAGATCCCTGGAAGAAGACCCGAGTTTGGCTCGGCACCTTCGACACGGCGGAGGATGCTGCCAGAGCTTACGATGAGGCCGCTCTCTCTCTCCGGGGACCGAAGGCGAAAACGAACTTCCCGTTGCATCCATCCACTATCTCTGTTCATCAGCAAATTCCATTCTCGCAGGAGTTTCATGATTCCGGTGGATTCTGCAAGATTAGTAACATTCCAGTTAATAGGCCTACATCGAGTAGTCTGAGCTCCACCGTGGAGTCTTTTAGCGGGCCGCGGGTTTCGATTCCGGCTCCATCGGTTCCGAAGCTCCGCCAGAAGTCCCTGCCGCAGGTCTCGCCCGACGATTGCCATAGCGACTGTGATTCGTCGTCCTCGGTTGTTGATGACAGTGAGGAATATGCTCACACGTCGTCAATTCGCAGAGTGTTGCCGTTCGATCTGAATCTACCTCCTCCACTGCCGCCGCCGCCGCATGACGTCGATTTATCCGCTGATGATCTTCATGCCACTGCTCTGTGTTTTTGA | 645 | 55.04 | MRRGRATDPLTAAETGQEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDAARAYDEAALSLRGPKAKTNFPLHPSTISVHQQIPFSQEFHDSGGFCKISNIPVNRPTSSSLSSTVESFSGPRVSIPAPSVPKLRQKSLPQVSPDDCHSDCDSSSSVVDDSEEYAHTSSIRRVLPFDLNLPPPLPPPPHDVDLSADDLHATALCF | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 24921770 | 24922414 | - | Lsi11G016670.1 | Lsi11g01667 | 674834 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01667 | 214 | CDD | AP2 | 24 | 81 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g01667 | 214 | Gene3D | AP2/ERF domain | 23 | 83 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi11g01667 | 214 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 | 17 | 186 | - | - | |
Lsi11g01667 | 214 | SUPERFAMILY | DNA-binding domain | 25 | 82 | IPR016177 | GO:0003677 | |
Lsi11g01667 | 214 | PRINTS | Ethylene responsive element binding protein signature | 25 | 36 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g01667 | 214 | PRINTS | Ethylene responsive element binding protein signature | 47 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g01667 | 214 | SMART | rav1_2 | 24 | 87 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g01667 | 214 | MobiDBLite | consensus disorder prediction | 116 | 130 | - | - | |
Lsi11g01667 | 214 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 17 | 186 | - | - | |
Lsi11g01667 | 214 | MobiDBLite | consensus disorder prediction | 116 | 173 | - | - | |
Lsi11g01667 | 214 | Pfam | AP2 domain | 24 | 73 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi11g01667 | 214 | ProSiteProfiles | AP2/ERF domain profile. | 24 | 81 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi10g01565 | Lsi11g01667 | CCT | |
Lsi10g01565 | Lsi11g01667 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g00571 | Lsi-Chr5:7088026 | Lsi11g01667 | Lsi-Chr11:24921770 | 6.39E-43 | dispersed | |
Lsi11g01667 | Lsi-Chr11:24921770 | Lsi11g01709 | Lsi-Chr11:25236694 | 1.12E-30 | dispersed | |
Lsi02g01460 | Lsi-Chr2:20305317 | Lsi11g01667 | Lsi-Chr11:24921770 | 3.01E-20 | transposed | |
Lsi10g01565 | Lsi-Chr10:20065741 | Lsi11g01667 | Lsi-Chr11:24921770 | 1.25E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26234 | PF00847 | AP2 | 6.20E-15 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01667 | K09286 | - | csv:101210265 | 332.798 |