Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01669 ATGACAATCGACCACCACTCCCAACACTCCGATCAAACGACCGATGATGATTCCGACCATCTCCATCCTACTCTCCCCACGCCAGTTGTCGCCAATGGCGCCGACTGCGAGAATGCCGGAGATGACTTCTTCGTTCCTCCCCTGAACTTCGCCGTCGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTCTTTTTTGCAGACATTAGGCCTTCGTTCGATTATATGTCTTTGTCCCGAGCCATATCCTGAGGCCAACATGGATTTTCTCAAGTCCAATGGGATCCGATTGTTTCAATTTGGGATTGAAGGTTCTAAGGCTGGTTCAGACAAGGTTGATGCGTATGTAAACTTGATTCTCGAGTGTATGAGGAATTTGGATGTGAGCGCTGATCAAATGTACTATTTGGAGCCTTTTGTGAACATTCCAGACTATACGATTCGTGAACACCGAACTGGTTGTGTTGTGGGATGCTTTAGAAAGTTGCAGAAATGGTGCCTATCGTCAGTGTTTGATGAGTACCAGCGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGGTTCATTGAACTATTCGACATTTCTGGCTTGAAGCATTTGCCATCATCATTTCCATGTTCCGAAAGTGGTCTAGTTACTTGTCATTCTTTAAGCCTCACATTTCGTTCAAGTGATTAA 696 46.12 MTIDHHSQHSDQTTDDDSDHLHPTLPTPVVANGADCENAGDDFFVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEANMDFLKSNGIRLFQFGIEGSKAGSDKVDAYVNLILECMRNLDVSADQMYYLEPFVNIPDYTIREHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGLKHLPSSFPCSESGLVTCHSLSLTFRSSD 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24952220 24955165 + Lsi11G016690.1 Lsi11g01669 674836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01669 231 PANTHER - 154 215 - -
Lsi11g01669 231 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 44 200 IPR029021 -
Lsi11g01669 231 Gene3D Protein tyrosine phosphatase superfamily 43 152 IPR029021 -
Lsi11g01669 231 Gene3D Protein tyrosine phosphatase superfamily 153 202 IPR029021 -
Lsi11g01669 231 PANTHER - 14 154 - -
Lsi11g01669 231 MobiDBLite consensus disorder prediction 1 27 - -
Lsi11g01669 231 Pfam Tyrosine phosphatase family 45 204 IPR004861 -
Lsi11g01669 231 PRINTS Plant and fungal dual specificity phosphatase signature 100 114 IPR020428 GO:0016791
Lsi11g01669 231 PRINTS Plant and fungal dual specificity phosphatase signature 81 94 IPR020428 GO:0016791
Lsi11g01669 231 PRINTS Plant and fungal dual specificity phosphatase signature 44 61 IPR020428 GO:0016791
Lsi11g01669 231 MobiDBLite consensus disorder prediction 1 22 - -
Lsi11g01669 231 PANTHER TYROSINE-PROTEIN PHOSPHATASE 14 154 - -
Lsi11g01669 231 PANTHER TYROSINE-PROTEIN PHOSPHATASE 154 215 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g01569 Lsi11g01669 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00702 Lsi-Chr6:11192637 Lsi11g01669 Lsi-Chr11:24952220 4.80E-52 dispersed
Lsi10g01569 Lsi-Chr10:20151968 Lsi11g01669 Lsi-Chr11:24952220 1.68E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01669 K18045 - csv:101209768 297.36