Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01698 ATGTTTGCAGTCAAGCACATTCTTAATATTGAATATAGTTATCTCTCACGTGCATTTTTTAGTCATGATTCTGTGAGAATTGTGGTTAGAGATTTGCTTTTGAATTTCTTATTCTTGACTGCCAAACACGACGGTGTCACCACTCACAACAACCACCACCACCATGTCCGATCACCGGGACTGAACCCGAACCCGAGACTCCATCAAGCATTTCTTGCTCTTCAAGCATGGAAAAAAGTCATTTACTCTGACCCAAGAAACCTCACCACCAATTGGGTGGGGCCATCAGTTTGCAACTACTTTGGAGTGTACTGTGCCCCATCTCTTGATGACCCAAAAATCCAAGTGGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCTAACGAATTGGGCCTTTTAACAGACCTTGCTCTGCTTCATCTCAACAGCAACCGATTCTGTGGCATTTTGCCACAATCTTTAGCCAATTTATCTCTTCTATTCGAATTGGATTTAAGCAACAACAGATTCGTAGGCCCTTTTCCTTCTGTTGTTCTTCTCCTTCCGAAATTAACATATCTTGATCTTCGATTCAACGAATTTGAAGGCCCAATTCCCTCTGAACTCTTCAACAAAACCCTCGACGCCATTTTTATCAACAGCAATCGTTTCACCAACATTATCCCACGAAACATCGGTGGAAAATCAGCCTCTGTGATTGTCTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCCACAATTGCAAGTTTTGCAAACAGTTTAGAAGAGCTTTTATTGATCAACACTAGTTTATCAGGCTGTTTGCCACAAGAAATTGGGTTTCTGTATAAATTGAAGGTTTTGGATGTGAGTTTTAACAAATTAAGGGGTCCTTTGCCTTATAGTTTAGCTGGGTTAGCTCAATTGGAGCAATTGAATTTAGCCCATAATTTGTTTGGTGGGAATTTGTATGAAGGTATCTGTAGCCTTCCGAATTTGGAGAATGTGACAGTTTCTTACAATTACTTTTGTGAAGAAGAAGGGATTTGCCGGAATTTGACGGCGGAAGGGATTGCTTTTGATGATCGGCGGAATTGTTTGCCGGAGAAGCCGTTGCAGAGGAGTAAAAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGACTGTTTTGAGCATCCGTGCGGCGGCGGTGGAGGTTATGGTTCTAGTATTGCGGCGGTTCCGGTTCCGGCTCCGACGCCAATTTCTTCAGCTTCTTCCTTTGTTGCCCCTTCCCACTTGTGA 1281 43.56 MFAVKHILNIEYSYLSRAFFSHDSVRIVVRDLLLNFLFLTAKHDGVTTHNNHHHHVRSPGLNPNPRLHQAFLALQAWKKVIYSDPRNLTTNWVGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLLLPKLTYLDLRFNEFEGPIPSELFNKTLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNKLRGPLPYSLAGLAQLEQLNLAHNLFGGNLYEGICSLPNLENVTVSYNYFCEEEGICRNLTAEGIAFDDRRNCLPEKPLQRSKKECSAVVERPVDCFEHPCGGGGGYGSSIAAVPVPAPTPISSASSFVAPSHL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25165472 25167497 - Lsi11G016980.1 Lsi11g01698 674865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01698 426 Gene3D Ribonuclease Inhibitor 69 234 IPR032675 -
Lsi11g01698 426 Gene3D Ribonuclease Inhibitor 235 358 IPR032675 -
Lsi11g01698 426 SUPERFAMILY L domain-like 70 344 - -
Lsi11g01698 426 Pfam Leucine rich repeat 259 317 IPR001611 GO:0005515
Lsi11g01698 426 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 35 424 - -
Lsi11g01698 426 PANTHER EXTENSIN-LIKE PROTEIN 35 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00270 Lsi-Chr11:2740543 Lsi11g01698 Lsi-Chr11:25165472 6.98E-122 dispersed
Lsi11g01698 Lsi-Chr11:25165472 Lsi04g01529 Lsi-Chr4:22899335 4.46E-75 dispersed
Lsi11g01698 Lsi-Chr11:25165472 Lsi06g00231 Lsi-Chr6:2653715 7.86E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01698 - - cmos:111437069 677.552