Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01698 ATGTTTGCAGTCAAGCACATTCTTAATATTGAATATAGTTATCTCTCACGTGCATTTTTTAGTCATGATTCTGTGAGAATTGTGGTTAGAGATTTGCTTTTGAATTTCTTATTCTTGACTGCCAAACACGACGGTGTCACCACTCACAACAACCACCACCACCATGTCCGATCACCGGGACTGAACCCGAACCCGAGACTCCATCAAGCATTTCTTGCTCTTCAAGCATGGAAAAAAGTCATTTACTCTGACCCAAGAAACCTCACCACCAATTGGGTGGGGCCATCAGTTTGCAACTACTTTGGAGTGTACTGTGCCCCATCTCTTGATGACCCAAAAATCCAAGTGGTCGCCGGAATTGACTTAAACCACGGCGACATCGCCGGATTCCTCCCTAACGAATTGGGCCTTTTAACAGACCTTGCTCTGCTTCATCTCAACAGCAACCGATTCTGTGGCATTTTGCCACAATCTTTAGCCAATTTATCTCTTCTATTCGAATTGGATTTAAGCAACAACAGATTCGTAGGCCCTTTTCCTTCTGTTGTTCTTCTCCTTCCGAAATTAACATATCTTGATCTTCGATTCAACGAATTTGAAGGCCCAATTCCCTCTGAACTCTTCAACAAAACCCTCGACGCCATTTTTATCAACAGCAATCGTTTCACCAACATTATCCCACGAAACATCGGTGGAAAATCAGCCTCTGTGATTGTCTTTGCTAACAACAATTTAAAGGGTTGTCTTCCACCCACAATTGCAAGTTTTGCAAACAGTTTAGAAGAGCTTTTATTGATCAACACTAGTTTATCAGGCTGTTTGCCACAAGAAATTGGGTTTCTGTATAAATTGAAGGTTTTGGATGTGAGTTTTAACAAATTAAGGGGTCCTTTGCCTTATAGTTTAGCTGGGTTAGCTCAATTGGAGCAATTGAATTTAGCCCATAATTTGTTTGGTGGGAATTTGTATGAAGGTATCTGTAGCCTTCCGAATTTGGAGAATGTGACAGTTTCTTACAATTACTTTTGTGAAGAAGAAGGGATTTGCCGGAATTTGACGGCGGAAGGGATTGCTTTTGATGATCGGCGGAATTGTTTGCCGGAGAAGCCGTTGCAGAGGAGTAAAAAGGAGTGTAGTGCGGTGGTTGAGCGTCCTGTGGACTGTTTTGAGCATCCGTGCGGCGGCGGTGGAGGTTATGGTTCTAGTATTGCGGCGGTTCCGGTTCCGGCTCCGACGCCAATTTCTTCAGCTTCTTCCTTTGTTGCCCCTTCCCACTTGTGA 1281 43.56 MFAVKHILNIEYSYLSRAFFSHDSVRIVVRDLLLNFLFLTAKHDGVTTHNNHHHHVRSPGLNPNPRLHQAFLALQAWKKVIYSDPRNLTTNWVGPSVCNYFGVYCAPSLDDPKIQVVAGIDLNHGDIAGFLPNELGLLTDLALLHLNSNRFCGILPQSLANLSLLFELDLSNNRFVGPFPSVVLLLPKLTYLDLRFNEFEGPIPSELFNKTLDAIFINSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNKLRGPLPYSLAGLAQLEQLNLAHNLFGGNLYEGICSLPNLENVTVSYNYFCEEEGICRNLTAEGIAFDDRRNCLPEKPLQRSKKECSAVVERPVDCFEHPCGGGGGYGSSIAAVPVPAPTPISSASSFVAPSHL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25165472 25167497 - Lsi11G016980.1 Lsi11g01698 674865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01698 426 Gene3D Ribonuclease Inhibitor 69 234 IPR032675 -
Lsi11g01698 426 Gene3D Ribonuclease Inhibitor 235 358 IPR032675 -
Lsi11g01698 426 SUPERFAMILY L domain-like 70 344 - -
Lsi11g01698 426 Pfam Leucine rich repeat 259 317 IPR001611 GO:0005515
Lsi11g01698 426 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 35 424 - -
Lsi11g01698 426 PANTHER EXTENSIN-LIKE PROTEIN 35 424 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01698 - - - cmos:111437069 677.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00270 Lsi-Chr11:2740543 Lsi11g01698 Lsi-Chr11:25165472 6.98E-122 dispersed
Lsi11g01698 Lsi-Chr11:25165472 Lsi04g01529 Lsi-Chr4:22899335 4.46E-75 dispersed
Lsi11g01698 Lsi-Chr11:25165472 Lsi06g00231 Lsi-Chr6:2653715 7.86E-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g277 . . . . . . . . . . . . . . Sed05g1943 . . Bhi05g01965 Tan02g0208 Cmetu01g0388 Lac12g0736 Hepe02g0129 . . . . . . . . . . . . Cone12ag1471 . . . Cme01g00299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01698 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01631 . 33 364 Leucine-rich Repeat extension Gene Families AT1G62440 59.2 8.6e-48 189.1
Lsi04g01602 . 45 291 Leucine-rich Repeat extension Gene Families AT1G62440 59.9 3.0e-45 180.6
Lsi11g01698 . 64 393 Leucine-rich Repeat extension Gene Families AT1G62440 58.8 3.4e-44 177.2
Lsi11g00270 CCT 40 391 Leucine-rich Repeat extension Gene Families AT1G62440 61.3 4.1e-42 170.2
Lsi06g00890 CCT 53 225 Leucine-rich Repeat extension Gene Families AT1G62440 69.4 3.5e-41 167.2
Lsi11g00270 CCT 5 391 Leucine-rich Repeat extension Gene Families AT4G13340 74.0 3.6e-67 253.4
Lsi06g00890 CCT 4 397 Leucine-rich Repeat extension Gene Families AT4G13340 73.2 4.0e-66 250.0
Lsi05g01631 . 33 366 Leucine-rich Repeat extension Gene Families AT4G13340 66.6 3.8e-53 206.8
Lsi04g01602 . 24 232 Leucine-rich Repeat extension Gene Families AT4G13340 70.3 3.1e-47 187.2
Lsi11g01698 . 59 394 Leucine-rich Repeat extension Gene Families AT4G13340 62.7 5.6e-44 176.4
Lsi09g01583 . 19 223 Leucine-rich Repeat extension Gene Families AT4G13340 56.1 8.9e-42 169.1
Lsi09g01584 . 19 223 Leucine-rich Repeat extension Gene Families AT4G13340 56.1 8.9e-42 169.1
Lsi11g00270 CCT 5 387 Leucine-rich Repeat extension Gene Families AT3G24480 73.0 3.1e-72 269.6
Lsi06g00890 CCT 16 392 Leucine-rich Repeat extension Gene Families AT3G24480 73.8 4.1e-72 269.2
Lsi05g01631 . 33 366 Leucine-rich Repeat extension Gene Families AT3G24480 63.3 1.9e-53 207.2
Lsi04g01602 . 24 232 Leucine-rich Repeat extension Gene Families AT3G24480 66.2 2.0e-47 187.2
Lsi11g01698 . 64 394 Leucine-rich Repeat extension Gene Families AT3G24480 60.5 1.5e-45 181.0
Lsi05g01631 . 15 365 Leucine-rich Repeat extension Gene Families AT3G22800 73.8 2.6e-76 283.1
Lsi11g01698 . 64 393 Leucine-rich Repeat extension Gene Families AT3G22800 64.7 1.4e-50 197.6
Lsi06g00890 CCT 65 393 Leucine-rich Repeat extension Gene Families AT3G22800 62.2 1.4e-37 154.5
Lsi04g01602 . 61 290 Leucine-rich Repeat extension Gene Families AT3G22800 61.0 4.1e-37 152.9
Lsi05g01631 . 32 365 Leucine-rich Repeat extension Gene Families AT5G25550 56.3 1.8e-39 160.6
Lsi11g00270 CCT 26 385 Leucine-rich Repeat extension Gene Families AT5G25550 62.2 2.0e-38 157.1
Lsi06g00890 CCT 39 219 Leucine-rich Repeat extension Gene Families AT5G25550 72.4 4.4e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi11g01698 Lsi_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0