Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01699 ATGGCAGATTCATCACACCATTCATCAGTGTTTCAGAAGATATGTAGCCATTCTCACCTCACTTCCAGGCTTTCCCCTGGCCTTCACTCCGCACGTTATAGTACAACAGGTGTATATGCTAATGGGGTTTTGGAGAATCCCTTAAAGACAGCTTATCATGGGACTGGCTTGGCTGGAGTTTCACCCACTTCTCCTCTTCTTGTACAAGCTCCTTCTGAGAAAGGTGCAGCTGGCTTTGCTGTGGATTTTCTTATGGGAGGAGTATCTGCTGCTGTTTCTAAAACAGCTGCTGCTCCAATTGAGCGTGTCAAACTGCTGATCCAAAATCAGGATGAGATGCTTAAGACTGGTAGGCTATCTGAGCCATACAAAGGAATTACTGACTGCTTTGCCCGTACAATTAAAGATGAAGGAGTCATTTCTCTATGGAGGGGAAACACTGCAAATGTTATCAGATACTTTCCCACACAAGCTTTGAATTTTGCCTTCAAGGATTACTTCAAGAGGCTGTTCAACTTCAAGAAAGATAGAGATGGTTACTGGAAATGGTTTGCTGGGAATTTGGCCTCTGGTGGTGCTGCTGGTGCTTCATCTCTTTTATTTGTTTATTCCCTTGATTATGCTAGAACTCGTCTGGCTAATGATGCTAAGGCTGCTAAAAAGGGTGGTGAGAGGCAGTTTAATGGTCTTGTTGATGTTTACAAGAAAACCCTTAAATCTGATGGCGTTGCTGGACTGTATCGTGGATTTAACATCTCTTGTGTTGGAATTATTGTGTACCGTGGTCTTTACTTTGGAATGTATGATTCAATGAAGCCCGTGGTTTTGGTTGGCGATTTGCAGGATAGTTTCGTTGCTAGTTTCTTGCTTGGATGGTGTATCACAATAGGAGCAGGTTTGGCTTCTTACCCAATTGACACCGTCCGAAGAAGAATGATGATGACCTCAGGCGAAGCAGTCAAGTATAATAGCTCCTTGGACGCATTCAAACAGATCGTCAAGAATGAGGGTACTAAGTCTCTCTTCAAGGGTGCTGGGGCAAACATTCTGCGTGCCGTTGCCGGTGCTGGTGTGTTGGCTGGGTATGATAAGCTTCAGCTCCTTGTTCTTGGCAAGAAATATGGTTCCGGTGGTGGTGGTTAA 1143 44.44 MADSSHHSSVFQKICSHSHLTSRLSPGLHSARYSTTGVYANGVLENPLKTAYHGTGLAGVSPTSPLLVQAPSEKGAAGFAVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKTGRLSEPYKGITDCFARTIKDEGVISLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYKKTLKSDGVAGLYRGFNISCVGIIVYRGLYFGMYDSMKPVVLVGDLQDSFVASFLLGWCITIGAGLASYPIDTVRRRMMMTSGEAVKYNSSLDAFKQIVKNEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLLVLGKKYGSGGGG 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25167552 25170933 - Lsi11G016990.1 Lsi11g01699 674866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01699 380 PRINTS Adenine nucleotide translocator signature 287 303 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi11g01699 380 PRINTS Adenine nucleotide translocator signature 123 144 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi11g01699 380 PRINTS Adenine nucleotide translocator signature 182 195 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi11g01699 380 PRINTS Adenine nucleotide translocator signature 79 91 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi11g01699 380 PRINTS Adenine nucleotide translocator signature 156 168 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi11g01699 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 286 368 IPR018108 -
Lsi11g01699 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 77 170 IPR018108 -
Lsi11g01699 380 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 22 379 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Lsi11g01699 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 182 274 IPR018108 -
Lsi11g01699 380 Gene3D Mitochondrial carrier domain 80 375 IPR023395 -
Lsi11g01699 380 Pfam Mitochondrial carrier protein 181 274 IPR018108 -
Lsi11g01699 380 Pfam Mitochondrial carrier protein 78 174 IPR018108 -
Lsi11g01699 380 Pfam Mitochondrial carrier protein 283 369 IPR018108 -
Lsi11g01699 380 PRINTS Mitochondrial carrier protein signature 145 165 IPR002067 GO:0055085
Lsi11g01699 380 PRINTS Mitochondrial carrier protein signature 82 95 IPR002067 GO:0055085
Lsi11g01699 380 PRINTS Mitochondrial carrier protein signature 291 313 IPR002067 GO:0055085
Lsi11g01699 380 PRINTS Mitochondrial carrier protein signature 247 265 IPR002067 GO:0055085
Lsi11g01699 380 PRINTS Mitochondrial carrier protein signature 95 109 IPR002067 GO:0055085
Lsi11g01699 380 PRINTS Mitochondrial carrier protein signature 197 215 IPR002067 GO:0055085
Lsi11g01699 380 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-LIKE 22 379 - -
Lsi11g01699 380 SUPERFAMILY Mitochondrial carrier 78 364 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01484 Lsi-Chr8:23002042 Lsi11g01699 Lsi-Chr11:25167552 0 dispersed
Lsi08g01485 Lsi-Chr8:23007388 Lsi11g01699 Lsi-Chr11:25167552 0 dispersed
Lsi08g01587 Lsi-Chr8:23875337 Lsi11g01699 Lsi-Chr11:25167552 2.55E-62 dispersed
Lsi11g01699 Lsi-Chr11:25167552 Lsi08g01591 Lsi-Chr8:23897733 1.00E-32 dispersed
Lsi11g01699 Lsi-Chr11:25167552 Lsi01g01544 Lsi-Chr1:13564225 4.90E-27 transposed
Lsi11g01699 Lsi-Chr11:25167552 Lsi04g00916 Lsi-Chr4:9249857 5.90E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01699 K05863 - csv:101212128 684.485