Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01704 ATGACCACCGGAAGGGAAATTCTCCACAAGATGAAGGTGAAGGCAGGGTTTTGTTCATCAGCAGCGGATACAGGAGGTGGGAAAGGCAAAGGCAAAGTGACGATCACAAAGAATAATAATATAAGTCATGGGAGTTATTTAGTGAAAGGAAAAGCCAACCATCCAATGGAAGATTATTTAGTCACAGATTTCAAGCGAGTCAAAGATCATGATTTGGGTTTGTTTGCCATTTTCGATGGCCATTTGGGCCATGACGTTGCTAATTTCTTGCAAAATAATCTCTTTGATAACATCCTTAAACAGGCCGATTTCTGGAGCGAAACAAGAAAAGCCATAAAAAGAGCTTACAAGAAAACAGACGAAGAAATATTGGATAAAGTGAAGCAACTTGGAAAAGGAGGATCAACGGCTGTAACTGCGATCTTGATCGACGGTCACAAACTTGTAGTTGCCAACGTTGGAGATTCTAGAGCTGTTTTGTGCAAAAACGGCGTCGCTGAGCAACTTTCTGTTGACCACGAACCCACTAAAGAGAAAAGAGAAATTGAAAGCCGTGGTGGCTTTGTATCAAATCTTCCAGGCGATGTTCCACGTGTCGACGGGCAATTGGCGGTAGCCAGAGCATTTGGAGATAAGAGCTTAAAAGTCCACCTCAGCTCAGAACCTGACGTGGAAGTCAAAATGGTTGACGAAACTACAGACTTCATGATTTTGGCTAGCGACGGCATATGGAAGGTAATGACAAACCGAGAGGCAGTAGAATCAATTAGACATATAAAGGACGCTAACTTAGCAGCCAAACGACTTATCGACGAAGCAGTATCTAGAAAAAGCAAGGACGACATATCGTGCATTGTTGTTAGGTTTCGATGA 873 42.73 MTTGREILHKMKVKAGFCSSAADTGGGKGKGKVTITKNNNISHGSYLVKGKANHPMEDYLVTDFKRVKDHDLGLFAIFDGHLGHDVANFLQNNLFDNILKQADFWSETRKAIKRAYKKTDEEILDKVKQLGKGGSTAVTAILIDGHKLVVANVGDSRAVLCKNGVAEQLSVDHEPTKEKREIESRGGFVSNLPGDVPRVDGQLAVARAFGDKSLKVHLSSEPDVEVKMVDETTDFMILASDGIWKVMTNREAVESIRHIKDANLAAKRLIDEAVSRKSKDDISCIVVRFR 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25194324 25199978 + Lsi11G017040.1 Lsi11g01704 674871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01704 290 ProSiteProfiles PPM-type phosphatase domain profile. 42 289 IPR001932 -
Lsi11g01704 290 Gene3D - 36 290 IPR036457 -
Lsi11g01704 290 SMART PP2C_SIG_2 47 289 IPR001932 -
Lsi11g01704 290 CDD PP2Cc 41 289 IPR001932 -
Lsi11g01704 290 SUPERFAMILY PP2C-like 35 289 IPR036457 -
Lsi11g01704 290 Pfam Protein phosphatase 2C 52 282 IPR001932 -
Lsi11g01704 290 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 3 289 - -
Lsi11g01704 290 PANTHER PROTEIN PHOSPHATASE 2C 3 289 IPR015655 GO:0004722|GO:0006470
Lsi11g01704 290 SMART PP2C_4 37 287 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00073 Lsi-Chr1:737296 Lsi11g01704 Lsi-Chr11:25194324 1.23E-90 dispersed
Lsi04g02061 Lsi-Chr4:27731720 Lsi11g01704 Lsi-Chr11:25194324 1.48E-130 dispersed
Lsi04g02233 Lsi-Chr4:29379074 Lsi11g01704 Lsi-Chr11:25194324 3.96E-88 dispersed
Lsi09g01223 Lsi-Chr9:19652763 Lsi11g01704 Lsi-Chr11:25194324 6.42E-17 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01704 K17506 - csv:101211399 514.227