Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01704 | ATGACCACCGGAAGGGAAATTCTCCACAAGATGAAGGTGAAGGCAGGGTTTTGTTCATCAGCAGCGGATACAGGAGGTGGGAAAGGCAAAGGCAAAGTGACGATCACAAAGAATAATAATATAAGTCATGGGAGTTATTTAGTGAAAGGAAAAGCCAACCATCCAATGGAAGATTATTTAGTCACAGATTTCAAGCGAGTCAAAGATCATGATTTGGGTTTGTTTGCCATTTTCGATGGCCATTTGGGCCATGACGTTGCTAATTTCTTGCAAAATAATCTCTTTGATAACATCCTTAAACAGGCCGATTTCTGGAGCGAAACAAGAAAAGCCATAAAAAGAGCTTACAAGAAAACAGACGAAGAAATATTGGATAAAGTGAAGCAACTTGGAAAAGGAGGATCAACGGCTGTAACTGCGATCTTGATCGACGGTCACAAACTTGTAGTTGCCAACGTTGGAGATTCTAGAGCTGTTTTGTGCAAAAACGGCGTCGCTGAGCAACTTTCTGTTGACCACGAACCCACTAAAGAGAAAAGAGAAATTGAAAGCCGTGGTGGCTTTGTATCAAATCTTCCAGGCGATGTTCCACGTGTCGACGGGCAATTGGCGGTAGCCAGAGCATTTGGAGATAAGAGCTTAAAAGTCCACCTCAGCTCAGAACCTGACGTGGAAGTCAAAATGGTTGACGAAACTACAGACTTCATGATTTTGGCTAGCGACGGCATATGGAAGGTAATGACAAACCGAGAGGCAGTAGAATCAATTAGACATATAAAGGACGCTAACTTAGCAGCCAAACGACTTATCGACGAAGCAGTATCTAGAAAAAGCAAGGACGACATATCGTGCATTGTTGTTAGGTTTCGATGA | 873 | 42.73 | MTTGREILHKMKVKAGFCSSAADTGGGKGKGKVTITKNNNISHGSYLVKGKANHPMEDYLVTDFKRVKDHDLGLFAIFDGHLGHDVANFLQNNLFDNILKQADFWSETRKAIKRAYKKTDEEILDKVKQLGKGGSTAVTAILIDGHKLVVANVGDSRAVLCKNGVAEQLSVDHEPTKEKREIESRGGFVSNLPGDVPRVDGQLAVARAFGDKSLKVHLSSEPDVEVKMVDETTDFMILASDGIWKVMTNREAVESIRHIKDANLAAKRLIDEAVSRKSKDDISCIVVRFR | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 25194324 | 25199978 | + | Lsi11G017040.1 | Lsi11g01704 | 674871 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01704 | 290 | ProSiteProfiles | PPM-type phosphatase domain profile. | 42 | 289 | IPR001932 | - | |
Lsi11g01704 | 290 | Gene3D | - | 36 | 290 | IPR036457 | - | |
Lsi11g01704 | 290 | SMART | PP2C_SIG_2 | 47 | 289 | IPR001932 | - | |
Lsi11g01704 | 290 | CDD | PP2Cc | 41 | 289 | IPR001932 | - | |
Lsi11g01704 | 290 | SUPERFAMILY | PP2C-like | 35 | 289 | IPR036457 | - | |
Lsi11g01704 | 290 | Pfam | Protein phosphatase 2C | 52 | 282 | IPR001932 | - | |
Lsi11g01704 | 290 | PANTHER | PROTEIN PHOSPHATASE 2C 39-RELATED | 3 | 289 | - | - | |
Lsi11g01704 | 290 | PANTHER | PROTEIN PHOSPHATASE 2C | 3 | 289 | IPR015655 | GO:0004722|GO:0006470 | |
Lsi11g01704 | 290 | SMART | PP2C_4 | 37 | 287 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00073 | Lsi-Chr1:737296 | Lsi11g01704 | Lsi-Chr11:25194324 | 1.23E-90 | dispersed | |
Lsi04g02061 | Lsi-Chr4:27731720 | Lsi11g01704 | Lsi-Chr11:25194324 | 1.48E-130 | dispersed | |
Lsi04g02233 | Lsi-Chr4:29379074 | Lsi11g01704 | Lsi-Chr11:25194324 | 3.96E-88 | dispersed | |
Lsi09g01223 | Lsi-Chr9:19652763 | Lsi11g01704 | Lsi-Chr11:25194324 | 6.42E-17 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01704 | K17506 | - | csv:101211399 | 514.227 |