Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01705 ATGAGCAGTGACATTAACGTTCCGCCGAGGAAGCTTCTTGCTGCGGTCAGACGAGATAACGGTGAAATGTGTTCTGATTCGCCGCGGTTTTCCTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCGTTCAATGGCGAGGATGAAGCAGAGGAGGATGGAGATCCGTATTCGTCAGATCATTTTCGGATGTATGAGTTTAAGGTGAGGCGTTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCACGGCGGCGAGATCCTCGTCGGTTTCATTACTCTGGTACCATGTGTCCGGAGTTTCGTCGCGGCGGTTGTGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAATGTTGGCTTCATCCGGCGAGGTACCGGACTGAGGCTTGTAAAGATGGAAAAAATTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCTCCTGTGAGTAATTTTCAAGGCGGTTCTTGTTCTTCGCCGAATAAGAGAAGTTCTGCTCTTAGATCGGCCACTGCCGGTTCTAATCACTGCTGTATGTTTTGTCATTGCGGTGGAGCCGCCACTTCCTCACCGACTTCGACGCTTTTTGGAATGTCTCATCTGTCTCCGCCGCACTCTCCGCCGCTCTCGCCAGGAAAACGTCGGTCATCTATGAATGGATTTTCGCCGATTTCGAGGTACAATCCTGATCAGTCTAAGTTAAATGGAGTTTTGAGCTATAAAGATGCACTGACAGAGCTCATGAGCTCAATTGAATCCATGAATATCGATGACGCCAATGCCACTTTAGCCGCCGCCGCCGCCACCGCCGCCGCTCCAAGACAGACGATTCCTTGGATTGATGTTTCATCTCTCAACAATGAAGATCAACTGCAGTTTGTTCTCTCACCTTCTACTCCAAATGTCTCCGTCGAGAACAAAGGTAACGGCGACAATAACGGATGGGCCTCCGCCTCCGATCCGGATCTCGGATGGGTTAATGATCTGCTGATGTAA 1053 49.48 MSSDINVPPRKLLAAVRRDNGEMCSDSPRFSFAVESLLQKFLPFNGEDEAEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRSSALRSATAGSNHCCMFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGKRRSSMNGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAAAAATAAAPRQTIPWIDVSSLNNEDQLQFVLSPSTPNVSVENKGNGDNNGWASASDPDLGWVNDLLM 350
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 25202477 25203607 + Lsi11G017050.1 Lsi11g01705 674872
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01705 350 MobiDBLite consensus disorder prediction 231 246 - -
Lsi11g01705 350 MobiDBLite consensus disorder prediction 318 338 - -
Lsi11g01705 350 Gene3D - 101 164 - -
Lsi11g01705 350 ProSiteProfiles Zinc finger C3H1-type profile. 102 128 IPR000571 GO:0046872
Lsi11g01705 350 PANTHER UNKEMPT FAMILY MEMBER 5 349 IPR045234 -
Lsi11g01705 350 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 5 349 - -
Lsi11g01705 350 MobiDBLite consensus disorder prediction 220 246 - -
Lsi11g01705 350 MobiDBLite consensus disorder prediction 318 335 - -
Lsi11g01705 350 SMART c3hfinal6 101 127 IPR000571 GO:0046872
Lsi11g01705 350 SMART c3hfinal6 136 159 IPR000571 GO:0046872
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g00204 Lsi-Chr11:2077559 Lsi11g01705 Lsi-Chr11:25202477 3.90E-58 dispersed
Lsi11g01705 Lsi-Chr11:25202477 Lsi03g01696 Lsi-Chr3:28284647 7.27E-58 dispersed
Lsi11g01705 Lsi-Chr11:25202477 Lsi06g00248 Lsi-Chr6:2788692 6.21E-68 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26237 None None None None Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01705 K23047 - csv:101211149 585.874