Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi11g01705 | ATGAGCAGTGACATTAACGTTCCGCCGAGGAAGCTTCTTGCTGCGGTCAGACGAGATAACGGTGAAATGTGTTCTGATTCGCCGCGGTTTTCCTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCGTTCAATGGCGAGGATGAAGCAGAGGAGGATGGAGATCCGTATTCGTCAGATCATTTTCGGATGTATGAGTTTAAGGTGAGGCGTTGTACTCGTAGTCGGAGTCATGATTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCACGGCGGCGAGATCCTCGTCGGTTTCATTACTCTGGTACCATGTGTCCGGAGTTTCGTCGCGGCGGTTGTGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAATGTTGGCTTCATCCGGCGAGGTACCGGACTGAGGCTTGTAAAGATGGAAAAAATTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCTCCTGTGAGTAATTTTCAAGGCGGTTCTTGTTCTTCGCCGAATAAGAGAAGTTCTGCTCTTAGATCGGCCACTGCCGGTTCTAATCACTGCTGTATGTTTTGTCATTGCGGTGGAGCCGCCACTTCCTCACCGACTTCGACGCTTTTTGGAATGTCTCATCTGTCTCCGCCGCACTCTCCGCCGCTCTCGCCAGGAAAACGTCGGTCATCTATGAATGGATTTTCGCCGATTTCGAGGTACAATCCTGATCAGTCTAAGTTAAATGGAGTTTTGAGCTATAAAGATGCACTGACAGAGCTCATGAGCTCAATTGAATCCATGAATATCGATGACGCCAATGCCACTTTAGCCGCCGCCGCCGCCACCGCCGCCGCTCCAAGACAGACGATTCCTTGGATTGATGTTTCATCTCTCAACAATGAAGATCAACTGCAGTTTGTTCTCTCACCTTCTACTCCAAATGTCTCCGTCGAGAACAAAGGTAACGGCGACAATAACGGATGGGCCTCCGCCTCCGATCCGGATCTCGGATGGGTTAATGATCTGCTGATGTAA | 1053 | 49.48 | MSSDINVPPRKLLAAVRRDNGEMCSDSPRFSFAVESLLQKFLPFNGEDEAEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVSNFQGGSCSSPNKRSSALRSATAGSNHCCMFCHCGGAATSSPTSTLFGMSHLSPPHSPPLSPGKRRSSMNGFSPISRYNPDQSKLNGVLSYKDALTELMSSIESMNIDDANATLAAAAATAAAPRQTIPWIDVSSLNNEDQLQFVLSPSTPNVSVENKGNGDNNGWASASDPDLGWVNDLLM | 350 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 25202477 | 25203607 | + | Lsi11G017050.1 | Lsi11g01705 | 674872 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi11g01705 | 350 | MobiDBLite | consensus disorder prediction | 231 | 246 | - | - | |
| Lsi11g01705 | 350 | MobiDBLite | consensus disorder prediction | 318 | 338 | - | - | |
| Lsi11g01705 | 350 | Gene3D | - | 101 | 164 | - | - | |
| Lsi11g01705 | 350 | ProSiteProfiles | Zinc finger C3H1-type profile. | 102 | 128 | IPR000571 | GO:0046872 | |
| Lsi11g01705 | 350 | PANTHER | UNKEMPT FAMILY MEMBER | 5 | 349 | IPR045234 | - | |
| Lsi11g01705 | 350 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 | 5 | 349 | - | - | |
| Lsi11g01705 | 350 | MobiDBLite | consensus disorder prediction | 220 | 246 | - | - | |
| Lsi11g01705 | 350 | MobiDBLite | consensus disorder prediction | 318 | 335 | - | - | |
| Lsi11g01705 | 350 | SMART | c3hfinal6 | 101 | 127 | IPR000571 | GO:0046872 | |
| Lsi11g01705 | 350 | SMART | c3hfinal6 | 136 | 159 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi11g00204 | Lsi-Chr11:2077559 | Lsi11g01705 | Lsi-Chr11:25202477 | 3.90E-58 | dispersed | |
| Lsi11g01705 | Lsi-Chr11:25202477 | Lsi03g01696 | Lsi-Chr3:28284647 | 7.27E-58 | dispersed | |
| Lsi11g01705 | Lsi-Chr11:25202477 | Lsi06g00248 | Lsi-Chr6:2788692 | 6.21E-68 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 26237 | None | None | None | None | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi11g01705 | K23047 | - | csv:101211149 | 585.874 |