Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01706 ATGAAGCGTTATGTTTACATCAACGACGATGAACCATCAACTGATCTTTATTGCGATAACCGCATTTCAAACCGGAAATACACATTATTGAACTTTCTCCCCAAAAATTTATGGGAACAGTTCAGCCGCTTCATGAACCAATACTTTTTGTTAATTGCATGCCTACAGTTGTGGCCGCTTATAACTCCAGTAAATCCTGCCAGTACATGGGGTCCACTTATCTTCATTTTTGCCGTGTCGGCAACAAAAGAGGCATGGGATGATTACAATAGATATTTGTCAGATAAAAAGGCAAATGAGAAAGAAGTTTGGGTTGTGAAGCAGGGTACCAGAAAAATTATTCAAGCACAAGATATTCATGTTGGTAATTTGGTATGGCTCAGGGAGAATGATGAAGTGCCTTCTGATCTTGTTTTGATTGGTACCTCTGATCCTCAAGGAATTTGCTATATAGAGGGAGTTATAGAGTGTCCTAAACCAGATAAGGATATTAGAAGATTTGATGCAAACATTCGGTTGTTTCCTCCTTTTATCGACAATGATGTGTGCCCTTTAACAATAAAAAACACAATTCTTCAGTCATGTTACTTGCGGAACACAGAGTGGGCCTGTGGCAATGAAACCAAGCTTGGAATGAGCAGGGGTGTCCCAGAACCAAAACTTACAGCTATGGATGCAATGATTGACAAGTTAACTGGTGCTATATTTGTTTTTCAGCTTGTGGTGGTTGTTGTTCTCGGTATAGCTGGTAATGTGTGGAAGGATTCTGAAGCTAGAAAGCTATGGTATGTGCAACATCAAGAGGAAGGGCCATGGTATGAGCTTTTGGTTATCCCTCTTCGGTTTGAGCTTCTTTGTTCAATCATGATACCTATTTCAATTAAGGTGTCTCTGGATCTTGTAAAGAGCTTATATGCAAAATTTATTGATTGGGACTATGATATGATTGACTGTGAGACCGGTATTCCTTCCCATGCTACGAATACAGCAATAAGTGAGGACCTGGGACAAGTCGAATACATTTTGACAGATAAAACCGGTACGCTCACTGAAAATAAGATGATCTTCAGGAGATGTTGTATCAGTGGCACATTTTATGGAAATGAAAATGGAGATGCCTTGAAAGATAAAAAGTTGCTCAATGCTATTGCAAGCAGCTCTCCGGATGTTATAAGATTTCTCACAATTATGGCAATATGTAATACGGTGGTGCCTACAAAAAGCAAAAGTGGAAATATCTTGTACAAGGCACAGTCACAGGATGAGGATGCTCTCGTGAATGCTGCTGCTTATTTGCATATGGTATTTGTCAATAAGAATGCTAGTATTCTTGAAATTCAGTTTAATGGAATGCTAAATAGATATGAGCTTCTAGATACTCTGGAGTTCACATCTGAACGAAAAAGAATGTCTGTGGTCGTTAAAGATTGTCAGAATGGGAAGATTGTCCTCCTGTCGAAAGGAGCAGATGAAGCTATACTTCCTTATGCTTATGCTGGCCAGCAAACAAGAACATTTATTGAAGCCGTGGATCAATATGCACAACTGGGTCTCCGCACATTATGTCTGGCTTGGCGTGAACTAGAGGAAGATGAGTATCGAGAATGGGCTCTTATGTTTAAGGAGGCTAATAGCACACTGGTTGACAGGGAGTGGAGGTTAGCTGAAGTTTGTCAAAGATTAGAGCGCAATTTTGAAGTCCTTGGAGTTACGGCCATAGAAGATAGGCTACAGGACGTTGCTTTTGTTGTTGATGGCTGGGCTCTTGAAATTGCTCTCAAGAATTATCGTAGGGCTTTCACTGAATTAGCAATACTATCAAGAACCGCAATATGTTGTCGTGTGACTCCATCACAGAAGGCTCAGCTTGTGGAACTCCTAAAATCGTGTGATTATAGAACACTGGCAATTGGAGATGGTGGGAATGATGTGAGGATGATACAGCAAGCTGACATTGGAGTTGGCATTAGTGGAAGAGAAGGACTGCAGGCAGCTAGGGCAGCTGATTATAGTATTGGAAGTGTCTCTGGGACCAGTCTCTTTAATTCTGTTAGCTTGATGGCTTACAATGTTTTCTACACCAGTATTCCTGTATTAGTTAGCGTCCTTGACAAAGATCTCAGTGAAGAAACGGTGATGCAACATCCTCAGATTTTATTTTACTGCCAAGCTGGGAGGATTTTAAATCCCAGCACATTTGCTGGATGGTTTGGTCGATCTCTATTTCATGCTGTTGTCGTGTTTGTAATTAGCATACATGCCTACGCTAATGAAAAGAGTGAAATGGTGGAGGTCTCAATGGTGGCACTATCTGGGTGCATTTGGTTACAAGCTTTTGTAGTGACTTTGGAAACCAATTCATTCACAATGTTGCAGCATCTTGCCATATGGGGGAACCTAGCTGCTTTCTACGTAATCAATTGGATCTTCAGCGCCATTCCTTCATCTGGGATGTATACAATAATGTACCGCTTATGCGGACAACCTTCTTATTGGATAACCATATTTACTCTCCAAGTGCCACTCGAAGATCTCTTGCATCAGCTTCCTCCTTTGATTTCTTTCAGACACCGCCAAGTTATTCAAGAAATAAGGACAACTGAACTCTTTAAGATATCACAGACTCAGAAT 2631 40.74 MKRYVYINDDEPSTDLYCDNRISNRKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSATKEAWDDYNRYLSDKKANEKEVWVVKQGTRKIIQAQDIHVGNLVWLRENDEVPSDLVLIGTSDPQGICYIEGVIECPKPDKDIRRFDANIRLFPPFIDNDVCPLTIKNTILQSCYLRNTEWACGNETKLGMSRGVPEPKLTAMDAMIDKLTGAIFVFQLVVVVVLGIAGNVWKDSEARKLWYVQHQEEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDYDMIDCETGIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCISGTFYGNENGDALKDKKLLNAIASSSPDVIRFLTIMAICNTVVPTKSKSGNILYKAQSQDEDALVNAAAYLHMVFVNKNASILEIQFNGMLNRYELLDTLEFTSERKRMSVVVKDCQNGKIVLLSKGADEAILPYAYAGQQTRTFIEAVDQYAQLGLRTLCLAWRELEEDEYREWALMFKEANSTLVDREWRLAEVCQRLERNFEVLGVTAIEDRLQDVAFVVDGWALEIALKNYRRAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGSVSGTSLFNSVSLMAYNVFYTSIPVLVSVLDKDLSEETVMQHPQILFYCQAGRILNPSTFAGWFGRSLFHAVVVFVISIHAYANEKSEMVEVSMVALSGCIWLQAFVVTLETNSFTMLQHLAIWGNLAAFYVINWIFSAIPSSGMYTIMYRLCGQPSYWITIFTLQVPLEDLLHQLPPLISFRHRQVIQEIRTTELFKISQTQN 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25213447 25225290 - Lsi11G017060.1 Lsi11g01706 674873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01706 877 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 579 674 - -
Lsi11g01706 877 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 13 152 - -
Lsi11g01706 877 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 675 836 - -
Lsi11g01706 877 PRINTS P-type cation-transporting ATPase superfamily signature 342 356 - -
Lsi11g01706 877 PRINTS P-type cation-transporting ATPase superfamily signature 637 656 - -
Lsi11g01706 877 Gene3D - 583 673 IPR023214 -
Lsi11g01706 877 Gene3D - 338 575 IPR023299 GO:0000166
Lsi11g01706 877 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 834 IPR023298 -
Lsi11g01706 877 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 348 579 - -
Lsi11g01706 877 ProSitePatterns E1-E2 ATPases phosphorylation site. 344 350 IPR018303 -
Lsi11g01706 877 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 604 668 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g01706 877 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 153 293 - -
Lsi11g01706 877 Gene3D - 79 157 - -
Lsi11g01706 877 SUPERFAMILY Calcium ATPase, transduction domain A 100 152 IPR008250 -
Lsi11g01706 877 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 349 534 IPR023299 GO:0000166
Lsi11g01706 877 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Lsi11g01706 877 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 13 152 - -
Lsi11g01706 877 Pfam Cation transport ATPase (P-type) 399 495 - -
Lsi11g01706 877 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 579 674 - -
Lsi11g01706 877 Pfam Phospholipid-translocating P-type ATPase C-terminal 674 838 IPR032630 -
Lsi11g01706 877 SUPERFAMILY HAD-like 337 677 IPR036412 -
Lsi11g01706 877 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 675 836 - -
Lsi11g01706 877 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 348 579 - -
Lsi11g01706 877 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 153 293 - -
Lsi11g01706 877 PRINTS H+-transporting ATPase (proton pump) signature 506 524 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi11g01706 877 PRINTS H+-transporting ATPase (proton pump) signature 637 653 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01091 Lsi-Chr9:17328856 Lsi11g01706 Lsi-Chr11:25213447 2.79E-90 dispersed
Lsi11g01706 Lsi-Chr11:25213447 Lsi03g01551 Lsi-Chr3:26477706 1.33E-18 dispersed
Lsi11g01706 Lsi-Chr11:25213447 Lsi02g00155 Lsi-Chr2:1273764 1.27E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01706 K01530 - cpap:110811952 1435.62