Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi11g01706 | ATGAAGCGTTATGTTTACATCAACGACGATGAACCATCAACTGATCTTTATTGCGATAACCGCATTTCAAACCGGAAATACACATTATTGAACTTTCTCCCCAAAAATTTATGGGAACAGTTCAGCCGCTTCATGAACCAATACTTTTTGTTAATTGCATGCCTACAGTTGTGGCCGCTTATAACTCCAGTAAATCCTGCCAGTACATGGGGTCCACTTATCTTCATTTTTGCCGTGTCGGCAACAAAAGAGGCATGGGATGATTACAATAGATATTTGTCAGATAAAAAGGCAAATGAGAAAGAAGTTTGGGTTGTGAAGCAGGGTACCAGAAAAATTATTCAAGCACAAGATATTCATGTTGGTAATTTGGTATGGCTCAGGGAGAATGATGAAGTGCCTTCTGATCTTGTTTTGATTGGTACCTCTGATCCTCAAGGAATTTGCTATATAGAGGGAGTTATAGAGTGTCCTAAACCAGATAAGGATATTAGAAGATTTGATGCAAACATTCGGTTGTTTCCTCCTTTTATCGACAATGATGTGTGCCCTTTAACAATAAAAAACACAATTCTTCAGTCATGTTACTTGCGGAACACAGAGTGGGCCTGTGGCAATGAAACCAAGCTTGGAATGAGCAGGGGTGTCCCAGAACCAAAACTTACAGCTATGGATGCAATGATTGACAAGTTAACTGGTGCTATATTTGTTTTTCAGCTTGTGGTGGTTGTTGTTCTCGGTATAGCTGGTAATGTGTGGAAGGATTCTGAAGCTAGAAAGCTATGGTATGTGCAACATCAAGAGGAAGGGCCATGGTATGAGCTTTTGGTTATCCCTCTTCGGTTTGAGCTTCTTTGTTCAATCATGATACCTATTTCAATTAAGGTGTCTCTGGATCTTGTAAAGAGCTTATATGCAAAATTTATTGATTGGGACTATGATATGATTGACTGTGAGACCGGTATTCCTTCCCATGCTACGAATACAGCAATAAGTGAGGACCTGGGACAAGTCGAATACATTTTGACAGATAAAACCGGTACGCTCACTGAAAATAAGATGATCTTCAGGAGATGTTGTATCAGTGGCACATTTTATGGAAATGAAAATGGAGATGCCTTGAAAGATAAAAAGTTGCTCAATGCTATTGCAAGCAGCTCTCCGGATGTTATAAGATTTCTCACAATTATGGCAATATGTAATACGGTGGTGCCTACAAAAAGCAAAAGTGGAAATATCTTGTACAAGGCACAGTCACAGGATGAGGATGCTCTCGTGAATGCTGCTGCTTATTTGCATATGGTATTTGTCAATAAGAATGCTAGTATTCTTGAAATTCAGTTTAATGGAATGCTAAATAGATATGAGCTTCTAGATACTCTGGAGTTCACATCTGAACGAAAAAGAATGTCTGTGGTCGTTAAAGATTGTCAGAATGGGAAGATTGTCCTCCTGTCGAAAGGAGCAGATGAAGCTATACTTCCTTATGCTTATGCTGGCCAGCAAACAAGAACATTTATTGAAGCCGTGGATCAATATGCACAACTGGGTCTCCGCACATTATGTCTGGCTTGGCGTGAACTAGAGGAAGATGAGTATCGAGAATGGGCTCTTATGTTTAAGGAGGCTAATAGCACACTGGTTGACAGGGAGTGGAGGTTAGCTGAAGTTTGTCAAAGATTAGAGCGCAATTTTGAAGTCCTTGGAGTTACGGCCATAGAAGATAGGCTACAGGACGTTGCTTTTGTTGTTGATGGCTGGGCTCTTGAAATTGCTCTCAAGAATTATCGTAGGGCTTTCACTGAATTAGCAATACTATCAAGAACCGCAATATGTTGTCGTGTGACTCCATCACAGAAGGCTCAGCTTGTGGAACTCCTAAAATCGTGTGATTATAGAACACTGGCAATTGGAGATGGTGGGAATGATGTGAGGATGATACAGCAAGCTGACATTGGAGTTGGCATTAGTGGAAGAGAAGGACTGCAGGCAGCTAGGGCAGCTGATTATAGTATTGGAAGTGTCTCTGGGACCAGTCTCTTTAATTCTGTTAGCTTGATGGCTTACAATGTTTTCTACACCAGTATTCCTGTATTAGTTAGCGTCCTTGACAAAGATCTCAGTGAAGAAACGGTGATGCAACATCCTCAGATTTTATTTTACTGCCAAGCTGGGAGGATTTTAAATCCCAGCACATTTGCTGGATGGTTTGGTCGATCTCTATTTCATGCTGTTGTCGTGTTTGTAATTAGCATACATGCCTACGCTAATGAAAAGAGTGAAATGGTGGAGGTCTCAATGGTGGCACTATCTGGGTGCATTTGGTTACAAGCTTTTGTAGTGACTTTGGAAACCAATTCATTCACAATGTTGCAGCATCTTGCCATATGGGGGAACCTAGCTGCTTTCTACGTAATCAATTGGATCTTCAGCGCCATTCCTTCATCTGGGATGTATACAATAATGTACCGCTTATGCGGACAACCTTCTTATTGGATAACCATATTTACTCTCCAAGTGCCACTCGAAGATCTCTTGCATCAGCTTCCTCCTTTGATTTCTTTCAGACACCGCCAAGTTATTCAAGAAATAAGGACAACTGAACTCTTTAAGATATCACAGACTCAGAAT | 2631 | 40.74 | MKRYVYINDDEPSTDLYCDNRISNRKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSATKEAWDDYNRYLSDKKANEKEVWVVKQGTRKIIQAQDIHVGNLVWLRENDEVPSDLVLIGTSDPQGICYIEGVIECPKPDKDIRRFDANIRLFPPFIDNDVCPLTIKNTILQSCYLRNTEWACGNETKLGMSRGVPEPKLTAMDAMIDKLTGAIFVFQLVVVVVLGIAGNVWKDSEARKLWYVQHQEEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDYDMIDCETGIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCISGTFYGNENGDALKDKKLLNAIASSSPDVIRFLTIMAICNTVVPTKSKSGNILYKAQSQDEDALVNAAAYLHMVFVNKNASILEIQFNGMLNRYELLDTLEFTSERKRMSVVVKDCQNGKIVLLSKGADEAILPYAYAGQQTRTFIEAVDQYAQLGLRTLCLAWRELEEDEYREWALMFKEANSTLVDREWRLAEVCQRLERNFEVLGVTAIEDRLQDVAFVVDGWALEIALKNYRRAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGSVSGTSLFNSVSLMAYNVFYTSIPVLVSVLDKDLSEETVMQHPQILFYCQAGRILNPSTFAGWFGRSLFHAVVVFVISIHAYANEKSEMVEVSMVALSGCIWLQAFVVTLETNSFTMLQHLAIWGNLAAFYVINWIFSAIPSSGMYTIMYRLCGQPSYWITIFTLQVPLEDLLHQLPPLISFRHRQVIQEIRTTELFKISQTQN | 877 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 25213447 | 25225290 | - | Lsi11G017060.1 | Lsi11g01706 | 674873 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi11g01706 | 877 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 579 | 674 | - | - | |
Lsi11g01706 | 877 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 13 | 152 | - | - | |
Lsi11g01706 | 877 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 675 | 836 | - | - | |
Lsi11g01706 | 877 | PRINTS | P-type cation-transporting ATPase superfamily signature | 342 | 356 | - | - | |
Lsi11g01706 | 877 | PRINTS | P-type cation-transporting ATPase superfamily signature | 637 | 656 | - | - | |
Lsi11g01706 | 877 | Gene3D | - | 583 | 673 | IPR023214 | - | |
Lsi11g01706 | 877 | Gene3D | - | 338 | 575 | IPR023299 | GO:0000166 | |
Lsi11g01706 | 877 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 15 | 834 | IPR023298 | - | |
Lsi11g01706 | 877 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 348 | 579 | - | - | |
Lsi11g01706 | 877 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 344 | 350 | IPR018303 | - | |
Lsi11g01706 | 877 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 604 | 668 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi11g01706 | 877 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 153 | 293 | - | - | |
Lsi11g01706 | 877 | Gene3D | - | 79 | 157 | - | - | |
Lsi11g01706 | 877 | SUPERFAMILY | Calcium ATPase, transduction domain A | 100 | 152 | IPR008250 | - | |
Lsi11g01706 | 877 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 349 | 534 | IPR023299 | GO:0000166 | |
Lsi11g01706 | 877 | Pfam | Phospholipid-translocating ATPase N-terminal | 5 | 70 | IPR032631 | - | |
Lsi11g01706 | 877 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 13 | 152 | - | - | |
Lsi11g01706 | 877 | Pfam | Cation transport ATPase (P-type) | 399 | 495 | - | - | |
Lsi11g01706 | 877 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 579 | 674 | - | - | |
Lsi11g01706 | 877 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 674 | 838 | IPR032630 | - | |
Lsi11g01706 | 877 | SUPERFAMILY | HAD-like | 337 | 677 | IPR036412 | - | |
Lsi11g01706 | 877 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 675 | 836 | - | - | |
Lsi11g01706 | 877 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 348 | 579 | - | - | |
Lsi11g01706 | 877 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 153 | 293 | - | - | |
Lsi11g01706 | 877 | PRINTS | H+-transporting ATPase (proton pump) signature | 506 | 524 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi11g01706 | 877 | PRINTS | H+-transporting ATPase (proton pump) signature | 637 | 653 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi09g01091 | Lsi-Chr9:17328856 | Lsi11g01706 | Lsi-Chr11:25213447 | 2.79E-90 | dispersed | |
Lsi11g01706 | Lsi-Chr11:25213447 | Lsi03g01551 | Lsi-Chr3:26477706 | 1.33E-18 | dispersed | |
Lsi11g01706 | Lsi-Chr11:25213447 | Lsi02g00155 | Lsi-Chr2:1273764 | 1.27E-19 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi11g01706 | K01530 | - | cpap:110811952 | 1435.62 |