Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01715 ATGGCTAGACAGTCGCAAAATGAAGAGTGGAAGATCTGCGGCCAAAGTTTTGATTTTGGATGGATGCAGATTGCCGAACCTGTTATGAAACTGTATACCGAGGCTACAGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTCTGGCAGTATCGAGATGCAGATCCTGGTTTTGGATCGTCCCAGGCAAAGGAGATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTTGCAGTCAAAAGCGGCCAATTTATTGTAGAAGTGAAACCACAGGGGGTTACCAAAGGCCTAGTGGCTGAAAAGATCTTCTCATCAATGGCGGAGGATGGAAAGCTTGCTGACTTTGTGTTGTGTATCGGTGACGACAGATCTGATGAGGACATGTTTGAAATAATTGGTAATGTGTTGTCCAGTAACATTATTTCTCCAACAACATCGGTTTTTGCCTGCACTGTTGGACAAAAGCCAAGTAAAGCCAAATATTATTTAGATGACACAACTGAAGTAATAAGCATGCTTGAATACCTGGCTGAAGCTTCTAGCCCATTGCCATCCTCTGACGATGAAGAAGGTGAAAATGCTTCTTGA 597 42.88 MARQSQNEEWKICGQSFDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGKLADFVLCIGDDRSDEDMFEIIGNVLSSNIISPTTSVFACTVGQKPSKAKYYLDDTTEVISMLEYLAEASSPLPSSDDEEGENAS 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25256976 25258474 - Lsi11G017150.1 Lsi11g01715 674882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01715 198 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 2 192 - -
Lsi11g01715 198 SUPERFAMILY HAD-like 6 180 IPR036412 -
Lsi11g01715 198 Pfam Trehalose-phosphatase 3 169 IPR003337 GO:0003824|GO:0005992
Lsi11g01715 198 TIGRFAM T6PP: trehalose-phosphatase 18 180 IPR003337 GO:0003824|GO:0005992
Lsi11g01715 198 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 2 192 IPR001830 GO:0003824|GO:0005992
Lsi11g01715 198 Gene3D - 59 192 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01540 Lsi-Chr6:25744451 Lsi11g01715 Lsi-Chr11:25256976 3.73E-74 dispersed
Lsi11g01715 Lsi-Chr11:25256976 Lsi04g00531 Lsi-Chr4:4900865 2.99E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01715 K16055 - csv:101209914 382.104